cluster # 9501

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Oryza sativa
cluster # 9501 cluster # 9501 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9501#0 length = 485 sequences # 5

consensus_9501#1 length = 457 sequences # 1

consensusID : consensus_9501#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 485
fasta sequence

                              [TGGACTCGGCAACGCGACGAGCACCAAAAGCGAGGGAAGAAAACCAATCCGAATCCGGAGAGAGAAGCGCAGGAGGCAAAATCCACTCCAATTCAACCCAATCACCCGCGGCGAGCCGAGCGGGCGGCGGAGCACGACGACGACGAGGTTTAGGTAGGGGTTCTTGGCTTGTCGGCGTCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGTCAGCGATGCGGAGGAGGTTCCAGGACTCCGTCAAGGCCCTCGAGGCCGACATCGAGCACGCCAATGAGC-TGGCGTCGGAGTTCTTGCGGGATTACGACGGGGCGGTGATCCAGATGCGGATGGCGTACAGCGCCGTCGCGCACTTCC-TCGTGCAGT-GGATCGACTTGCAAGC-TCGCCGGCGCGCTCGGCCTCCTNAAGATCATGATCTACAAAGGTGTACGCCGATGGACCACGGTTTTCNGAAGTTGGAAANGAAGCCACATAAGCAATTTTA]

[+] EMBL AU174436             [TGGACTCGGCAACGCGACGAGCACCAAAAGCGAGGGAAGAAAACCAATCCGAATCCGGAGAGAGAAGCGCAGGAGGCAAAATCCACTCCAATTCAACCCAATCACCCGCGGCGAGCCGAGCGGGCGGCGGAGCACGACGACGACGAGGTTTAGGTAGGGGTTCTTGGCTTGTCGGCGTCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGTCAGCGATGCGGAGGAGGTTCCAGGACTCCGTCAAGGCCCTCGAGGCCGACATCGAGCACGCCAATGAGC TGGCGTCGGAGTTCTTGCGGGATTACGACGGGGCGGTGATCCAGATGCGGATGGCGTACAGCGCCGTCGCGCACTTCCTTCGTGCAGTNGGATCGACTTGCAAGC TCGCCGGCGCGCTCGGCCTCCTNAAGATCATGATCTAC                                                                ]
[+] EMBL AU077584             [ GGACTCGGCAACGCGACGAGCACCAAAAGCGAGGGAAGAAAACCAATCCGAATCCGGAGAGAGAAGCGCAGGAGGCAAAATCCACTCCAATTCAACCCAATCACCCGCGGCGAGCCGAGCGGGCGGCGGA NACGACGACGACGAGGTTTAGGTAGGGGTTCTTGGCTTGTCGGCGTCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGTCAGCGATGCGGAGGAGGTTCCAGGACTCCGTCAAGGCCCTCGAGGCCGACATCGAGCACGCCAATGAGC TGGCGTCGGAGTTCTTGCGGGATTACGACGGGGCGGTGATCCAGATGCGGATGGCGTACAGCGCCGTCGCGCACTTCC TCGTGCAGT GGATCGAC TGCAAGC TC                                                                                                    ]
[+] EMBL OSC100511            [           ACGCGACGAGCACCAAAAGCGAGGGAAGAAAACCAATCCGAATCCGGAGAGAGAAGCGCAGGAGGCAAAATCCACTCCAATTCAACCCAATCACCCGCGGCGAGCCGAGCGGGCGGCGGAG ACGACGACGACGAGGTTTAGGTAGGGGTTCTTGGCTTGTCGGCGTCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGTNAGCNATGCGGAGGAGGTTCCAGGACTCCGTNAAGGCCCTCGAGGCCGACATCNAGCACGCCAATNAGCTTNGCGTCGGAGTTCTTTCGG                                                                                                                                                                                            ]
[+] EMBL AU077555             [                                    AAGAAAACCAATCCGAATCCGGAGAGAGAAGCGCAGGAGGCAAAATCCACTCCAATTCAACCCAATCACCCGCGGCGAGCCGAGCGGGCGGCGGA NACGACGACGACGAGGTTTAGGTAGGGGTTCTTGGCTTGTCGGCGTCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGTCAGCGATGCGGAGGAGGTTCCAGGACTCCGTCAAGGCCCTCGAGGCCGACATCGAGCACGCCAATTAGC TGGCGTCGGAGTTCTTGCGGGATTACGACGGGGCGGTGATCCAGATGCGGATGGCGTACANCGCCGTCG GCACTTCC TCGTGCAGT TGATC NCTT CAAACTTAGCCGGCGCGTTCGGCCTCCTCAAGATCATGATCTNCAAAGGTGTACGCCGATGGACCACGGTTTTCNGAAGTTGGAAANGAAGCCACATAAGCAATTTTA]
[+] EMBL CF312034             [                                                            AGAGAAGCGCAGGAGGCAAAATCCACTCCAATTCAACCCAATCACCCGCGGCGAGCCGAGCGGGCGGCGGAGCACGACGACGACGAGGTTTA GTAGGGGTTCTTGGCTTGTCGGCGTCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGTCAGCGATGCGGAGGAGGTTCCAGGACTCCGTCAAGGCCCTCGAGGCCGACATCGAGCACGCCAATGAGC TGGCGTCGGAGTTCTTGCGGGATTACGACGGGGCGGTGATCCAGATGCGGATGGCGTACAGCGCCGTCGCGCACTTCC TCGTGCAGT GGATCGACT                                                                                                              ]




>consensus_9501#0
TGGACTCGGCAACGCGACGAGCACCAAAAGCGAGGGAAGAAAACCAATCCGAATCCGGAG
AGAGAAGCGCAGGAGGCAAAATCCACTCCAATTCAACCCAATCACCCGCGGCGAGCCGAG
CGGGCGGCGGAGCACGACGACGACGAGGTTTAGGTAGGGGTTCTTGGCTTGTCGGCGTCG
GCGGCGGCGGCGGCGGAGGAGGAGGAGGAGTCAGCGATGCGGAGGAGGTTCCAGGACTCC
GTCAAGGCCCTCGAGGCCGACATCGAGCACGCCAATGAGCTGGCGTCGGAGTTCTTGCGG
GATTACGACGGGGCGGTGATCCAGATGCGGATGGCGTACAGCGCCGTCGCGCACTTCCTC
GTGCAGTGGATCGACTTGCAAGCTCGCCGGCGCGCTCGGCCTCCTNAAGATCATGATCTA
CAAAGGTGTACGCCGATGGACCACGGTTTTCNGAAGTTGGAAANGAAGCCACATAAGCAA
TTTTA

consensusID : consensus_9501#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 457
fasta sequence

                              [GGCAACCCGACGAGCACCAAAAGCGAGGGAAGAAAACCAATCCGAATCCGGAGAGAGAAGCGCAGGAGGCAAAATCCACTCCAATTCAACCCAATCACCCGCGGCGAGCCGAGCGGGCGGCGGAGCACGACGACGACGAGGTTTAGGTAGGGGTTCTTGGCTTGTCGGCGTCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGTCAGCGATGCGGAGGAGGTTCCAGGACTCCGTCAAGGCCCTCGAGGCCGACATCGAGCACGCCAATGAGCTGTGAGTTCTTCCTCCCTTCGCCGGTCGCGGCTCGTGGACGGTGGTGGTGGTGGGGGGTTTGCGTGTGGTTCATCTCTCTCTTTTGCAGGGCGTCGGAGTTCTTGCGGGATTACGACGGGGCGGTGATCCAGATGCGGATGGCGTACAGCGCCGTCGCGCACTTCCTCGTGCAGTGGATCGACT]

[+] EMBL CB643585             [GGCAACCCGACGAGCACCAAAAGCGAGGGAAGAAAACCAATCCGAATCCGGAGAGAGAAGCGCAGGAGGCAAAATCCACTCCAATTCAACCCAATCACCCGCGGCGAGCCGAGCGGGCGGCGGAGCACGACGACGACGAGGTTTAGGTAGGGGTTCTTGGCTTGTCGGCGTCGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGTCAGCGATGCGGAGGAGGTTCCAGGACTCCGTCAAGGCCCTCGAGGCCGACATCGAGCACGCCAATGAGCTGTGAGTTCTTCCTCCCTTCGCCGGTCGCGGCTCGTGGACGGTGGTGGTGGTGGGGGGTTTGCGTGTGGTTCATCTCTCTCTTTTGCAGGGCGTCGGAGTTCTTGCGGGATTACGACGGGGCGGTGATCCAGATGCGGATGGCGTACAGCGCCGTCGCGCACTTCCTCGTGCAGTGGATCGACT]




>consensus_9501#1
GGCAACCCGACGAGCACCAAAAGCGAGGGAAGAAAACCAATCCGAATCCGGAGAGAGAAG
CGCAGGAGGCAAAATCCACTCCAATTCAACCCAATCACCCGCGGCGAGCCGAGCGGGCGG
CGGAGCACGACGACGACGAGGTTTAGGTAGGGGTTCTTGGCTTGTCGGCGTCGGCGGCGG
CGGCGGCGGAGGAGGAGGAGGAGTCAGCGATGCGGAGGAGGTTCCAGGACTCCGTCAAGG
CCCTCGAGGCCGACATCGAGCACGCCAATGAGCTGTGAGTTCTTCCTCCCTTCGCCGGTC
GCGGCTCGTGGACGGTGGTGGTGGTGGGGGGTTTGCGTGTGGTTCATCTCTCTCTTTTGC
AGGGCGTCGGAGTTCTTGCGGGATTACGACGGGGCGGTGATCCAGATGCGGATGGCGTAC
AGCGCCGTCGCGCACTTCCTCGTGCAGTGGATCGACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9501#0      TGGACTCGGCAACGCGACGAGCACCAAAAGCGAGGGAAGAAAACCAATCCGAATCCGGAG 60
consensus_9501#1      -------GGCAACCCGACGAGCACCAAAAGCGAGGGAAGAAAACCAATCCGAATCCGGAG 53
                             ****** **********************************************

consensus_9501#0      AGAGAAGCGCAGGAGGCAAAATCCACTCCAATTCAACCCAATCACCCGCGGCGAGCCGAG 120
consensus_9501#1      AGAGAAGCGCAGGAGGCAAAATCCACTCCAATTCAACCCAATCACCCGCGGCGAGCCGAG 113
                      ************************************************************

consensus_9501#0      CGGGCGGCGGAGCACGACGACGACGAGGTTTAGGTAGGGGTTCTTGGCTTGTCGGCGTCG 180
consensus_9501#1      CGGGCGGCGGAGCACGACGACGACGAGGTTTAGGTAGGGGTTCTTGGCTTGTCGGCGTCG 173
                      ************************************************************

consensus_9501#0      GCGGCGGCGGCGGCGGAGGAGGAGGAGGAGTCAGCGATGCGGAGGAGGTTCCAGGACTCC 240
consensus_9501#1      GCGGCGGCGGCGGCGGAGGAGGAGGAGGAGTCAGCGATGCGGAGGAGGTTCCAGGACTCC 233
                      ************************************************************

consensus_9501#0      GTCAAGGCCCTCGAGGCCGACATCGAGCACGCCAATGAGCTG-GCGTCGGAGTTCTTGCG 299
consensus_9501#1      GTCAAGGCCCTCGAGGCCGACATCGAGCACGCCAATGAGCTGTGAGTTCTTCCTCCCTTC 293
                      ****************************************** * **      **     

consensus_9501#0      G--GATTACGACGGGGCGGTGATCCAGATGCGGATGGCGTACAGCGCCGTCGCGCACTTC 357
consensus_9501#1      GCCGGTCGCGGCTCGTGGACGGTGGTGGTGGTGGGGGGTTTGCGTGTGGTTCATCTCTCT 353
                      *  * *  ** *  *  *  * *   * **  *  **  *   * *  **    * **  

consensus_9501#0      CTCGTGCAGTGGATCGACTTGCAAGCTCGCCGGCGCGCTCGGCCTCCTNAAGATCATGAT 417
consensus_9501#1      CTTTTGCAGGGCGTCGG------AGTTCTTGCGGGATTACGACGGGGCGGTGATCCAGAT 407
                      **  ***** *  ***       ** **    * *    ** *        ****  ***

consensus_9501#0      CTACAAAGGTGTACGCCGATGGACCACGGTTTTCNGAAGTTGGAAANGAAGCCACATAAG 477
consensus_9501#1      GCG-GATGGCGTACAGCGCCGTCGCGCACTTCCTCGTGCAGTGGATCGACT--------- 457
                           * ** ****  **  *   * *  **    *      * *  **           

consensus_9501#0      CAATTTTA 485
consensus_9501#1      --------