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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9503#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1177 fasta sequence
[AACAACTCCTTTCCATAACATTCCTTTAAAGAGGAGAAATCAACCTCTCCTATAACCTTGAAATATTTAACCCCAAGACTAGCCAACTGGCCATCCAAATCAAAGTAGTTAATCTATGGATGAAGGAAAGAATGAGAAACACAACAACATAATATCTGTTGCTTCCTCCCCTGCTCCAATCCTGCACCTGTAGACACATATCATATCCCCCCTACCAACAAATGCAAACATCTGCATGACATATATGTTCTCCCTATATATATACTAGATGTAGAATTAATTAAGTTATGATCGGTAAGGCACATGCATCATGCATGCATGCCTTTTGATCAGTTGTGTACTATATACTTGGAGTATGATCAGACTTGGAGTTGTGACCAACTGATGAGAGCCCTAGCAAAGCTACAAGGCCGTGGTCTTGTAGTGGTGGTGGTGGTGGTGGTACAGATCCTGCAACTTCTTCCACGACTCCTCCCTCTGCATCTTGAGCTGCTTGTAGAAGTTGCCGATGAACGCCTCCGCCTTGGTGAACAGCTCTTGCTTGCTCATCATCTGCTCGCCGCCGCCCCCGCCGCCGCCCTTCGTCCAGCACCCTTCCTCCTCCTCGTGGACGACGACGTCCTCGCCGTCCCCGCCCCC-GATGAAGAAGAGGCTCGCCCTCGACGGGCACCTCCTCATCTTCTTGGACTTCTTGGCCGCCGCTGCCGCCGGCAT-GGCACCGCCGGCGATGACGACGACGTCCCTGCTGCCGGCTGCAGCCTCTAACGCCGCCGCCTTCGGTGTCAAGGATGGTGAAGCGGCCACAATTACAGCGCTGCTACTGCTACTACCGTTGACATGGTGATGACGACCGTTGGTCGCCGCCGCAGCGACGTCGACTTCACCTGGTCTATTGCTGTGGCTCAGCCTCAGAGCTGCGGCGGCGGCGGCCGGCTTGGGCAGCAGCTTGTCGTCGCGCGGGCCGCTGGAGATGGCGGCGAGGAAGCCGGCCTCGACGCCGAGGGCGACGACGAGGGCGTTGAAGAGGAGGTAGAGGTAGGGCTGCCTGAGGGAGGAAGGCACCAAGGGGAGGAGGAGGTAGAGGAGGAGGAGGGACGCCATCTTGGCCACCTGGGCCAGCGTTGGAAACCTCTTCTTCTCCATGGCCATCACCATTTGTAGCTAGCTAAGAAGACTA]
[+] EMBL CB652199 [AACAACTCCTTTCCATAACATTCCTTTAAAGAGGAGAAATCAACCTCTCCTATAACCTTGAAATATTTAACCCCAAGACTAGCCAACTGGCCATCCAAATCAAAGTAGTTAATCTATGGATGAAGGAAAGAATGAGAAACACAACAACATAATATCTGTTGCTTCCTCCCCTGCTCCAATCCTGCACCTGTAGACACATATCATATCCCCCCTACCAACAAATGCAAACATCTGCATGACATATATGTTCTCCCTATATATATACTAGATGTAGAATTAATTAAGTTATGATCGGTAAGGCACATGCATCATGCATGCATGCCTTTTGATCAGTTGTGTACTATATACTTGGAGTATGATCAGACTTGGAGTTGTGACCAACTGATGAGAGCCCTAGCAAAGCTACAAGGCCGTGGTCTTGTAGTGGTGGTGGTGGTGGTGGTACAGATCCTGCAACTTCTTCCACGACTCCTCCCTCTGCATCTTGAGCTGCTTGTAGAAGTTGCCGATGAACGCCTCCGCCTTGGTGAACAGCTCTTGCTTGCTCATCATCTGCTCGCCGCCGCCCCCGCCGCCGCCCTTCGTCCAGCACCCTTCCTCCTCCTCGTGGACGACGACGTCCTCGCCGTCCCCGCCCCC GATGAAGAAGAGGCTCGCCCTCGACGGGCACCTCCTCATCTTCTTGGACTTCTTGGCCGCCGCTGCCGCCGGCAT GGCACCGCCGGCGATGACGACGACG ]
[-] EMBL AU164239 [ CCCCCTACCAACAAATGCAAACATCTGCATGACATATATGTTCTCCCTATATATATACTAGATGTAGAATTAATTAAGTTATGATCGGTAAGGCACATGCATCATGCATGCATGCCTTTTGATCAGTTGTGTACTATATACTTGGAGTATGATCAGACTTGGAGTTGTGACCAACTGATGAGAGCCCTAGCAAAGCTACAAGGCCGTGGTCTTGTAGTGGTGGTGGTGGTGGTGGTACAGATCCTGCAACTTCTTCCACGACTCCTCCCTCTGCATCTTGAGCTGCTTGTAGAAGTTGCCGATGAACGCCTCCGCCTTGGT ]
[-] EMBL AU078053 [ ttttTGACATATATGTTCTCCCTATATATATACTAGATGTAGAATTAATTAAGTTATGATCGGTAAGGCACATGCATCATGCATGCATGCCTTTTGATCAGTTGTGTACTATATACTTGGAGTATGATCAGACTTGGAGTTGTGACCAACTGATGAGAGCCCTAGCAAAGCTACAAGGCCGTGGTCTTGTAGTGGTGGTGGTGGTGGTGGTACAGATCCTGCAACTTCTTCCACGACTCCTCCCTCTGCATCTTGAGCTGCTTGTAGAAGTTGCCGATGAACGCCTCCGCCTTGGTGAACAGCTCTTGCTTGCTCATCATCTGCTCGCCGCCGCCCCCGCCGCCGCCCTTCGTCCAGCACCCTTCCTCCTCCTCGTGGACGACGACGTCCTCGCCGTCCCCGCCCCCGGATGAAGAAGAGGCTCGCCCTCGACGGGCACCTCCTCATCTTCTTGGANTTCTTGGCCGCCGCTGCCGCCGGCATGGGCACCGCCGG ]
[-] EMBL CB652198 [ CTGCTTGTAGAAGTTGCCGATGAACGCCTCCGCCTTGGTGAACAGCTCTTGCTTGCTCATCATGTGCTCGCCGCCGCCCCCGCCGCCGCCCTTCGTCCAGCACCCTTCCTCCTCCTCGTGGACGACGACGTCCTCGCCGTCCCCGCCCCC GATGAAGAAGAGGCTCGCCCTCGACGGGCACCTCCTCATCTTCTTGGACTTCTTGGCCGCCGCTGCCGCCGGCAT GGCACCGCCGGCGATGACGACGACGTCCCTGCTGCCGGCTGCAGCCTCTAACGCCGCCGCCTTCGGTGTCAAGGATGGTGAAGCGGCCACAATTACAGCGCTGCTACTGCTACTACCGTTGACATGGTGATGACGACCGTTGGTCGCCGCCGCAGCGACGTCGACTTCACCTGGTCTATTGCTGTGGCTCAGCCTCAGAGCTGCGGCGGCGGCGGCCGGCTTGGGCAGCAGCTTGTCGTCGCGCGGGCCGCTGGAGATGGCGGCGAGGAAGCCGGCCTCGACGCCGAGGGCGACGACGAGGGCGTTGAAGAGGAGGTAGAGGTAGGGCTGCCTGAGGGAGGAAGGCACCAAGGGGAGGAGGAGGTAGAGGAGGAGGAGGGACGCCATCTTGGCCACCTGGGCCAGCGTTGGAAACCTCTTCTTCTCCATGGCCATCACCATTTGTAGCTAGCTAAGAAGACTA]
consensusID : consensus_9503#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence
[TTCGCCGCCGCCCCCCGCCGCCGCCCNTTCGTCCAAGAACCTTTCTTCCTTCCTCCTTGGAACGACGACCTTCCTCGCCCTTCCCCGCCCCCCCGATGAAAGAAGAAGCTTCGCCTTCGAACGGGCAACTTCCTTCATCTTTCTTGGAACTTTCTTGGCCCGCCCGTTNCCCGCCGNCATGGCACCGCCGGCCGATGACGACGACCTTCCCTTGCTGCCCGGNTGCAGCCTCTAACGCCGCCCGCCTTCGGTGTCAAGGGATGTTGAAAGCGGCCCACAATTAACAGCGCTGCTACTGCTACTACCGTTGACATGGTGATGANACCGTTGGTCGCCGCCGCAGCGACGTCGACTTCACCTGGTCTATTGCTGTGGCTCAGCCTCAGAGCTGCGGCGGCGGCGGCCGGCTTGGGCAGCAGCTTGTCGTCGCGCGGGCCGCTGGAGATGGCGGCGAGGAAGCCGGCCTCGACGCCGAGGGCGACGACGAGGGCGTTGAAGAGGAGGTAGAGGTAGGGCTGCCTGAGGGAGGAAGGCACCAAGGGGAGGAGGAGGNAGAGGAGGAGGAGGGACGCCATCTTGGCCACCTGGGCCAGCGTTGGAAACCTCTTCTTCTCCATGGCCATCACCATTTGTAGCTAGCTAAGGCTACTAGAGTCTAGG]
[-] EMBL AU078052 [TTCGCCGCCGCCCCCCGCCGCCGCCCNTTCGTCCAAGAACCTTTCTTCCTTCCTCCTTGGAACGACGACCTTCCTCGCCCTTCCCCGCCCCCCCGATGAAAGAAGAAGCTTCGCCTTCGAACGGGCAACTTCCTTCATCTTTCTTGGAACTTTCTTGGCCCGCCCGTTNCCCGCCGNCATGGCACCGCCGGCCGATGACGACGACCTTCCCTTGCTGCCCGGNTGCAGCCTCTAACGCCGCCCGCCTTCGGTGTCAAGGGATGTTGAAAGCGGCCCACAATTAACAGCGCTGCTACTGCTACTACCGTTGACATGGTGATGANACCGTTGGTCGCCGCCGCAGCGACGTCGACTTCACCTGGTCTATTGCTGTGGCTCAGCCTCAGAGCTGCGGCGGCGGCGGCCGGCTTGGGCAGCAGCTTGTCGTCGCGCGGGCCGCTGGAGATGGCGGCGAGGAAGCCGGCCTCGACGCCGAGGGCGACGACGAGGGCGTTGAAGAGGAGGTAGAGGTAGGGCTGCCTGAGGGAGGAAGGCACCAAGGGGAGGAGGAGGNAGAGGAGGAGGAGGGACGCCATCTTGGCCACCTGGGCCAGCGTTGGAAACCTCTTCTTCTCCATGGCCATCACCATTTGTAGCTAGCTAAGGCTACTAGAGTCTAGG]
consensusID : consensus_9503#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 396 fasta sequence
[GGGAAGACCAGAAGAACTCCTTTCCATAACATTTCTTACTTTAGGAGAAATCAAACTCTCCTATAACCTTGAAATATTTAACCCCAAGACTAGCCAACGGGCATCAAATCAAAGTAGTTAATCTATGGATGAAGGAAAGAATGAGAAACACAACAAGCATAATATCTGTGGTTCCTCCCCGTGGTCCAATCCGTGACCGTGTAGACACATATCATATCCCCCCTACCAACAAAGTGGCAACATCTGGATGACATATATGTTCTCCCTATATATTATNACTAGCATGTAGACATTAATTAAGTTCATGATCGGNAAGGCGACATGCGATCATGGGATGGATGGCTTTGTGATCCAGTTGTTGTACTATATACTTGGAGTATGATCAGAATTGGAGTT]
[-] EMBL BM038959 [GGGAAGACCAGAAGAACTCCTTTCCATAACATTTCTTACTTTAGGAGAAATCAAACTCTCCTATAACCTTGAAATATTTAACCCCAAGACTAGCCAACGGGCATCAAATCAAAGTAGTTAATCTATGGATGAAGGAAAGAATGAGAAACACAACAAGCATAATATCTGTGGTTCCTCCCCGTGGTCCAATCCGTGACCGTGTAGACACATATCATATCCCCCCTACCAACAAAGTGGCAACATCTGGATGACATATATGTTCTCCCTATATATTATNACTAGCATGTAGACATTAATTAAGTTCATGATCGGNAAGGCGACATGCGATCATGGGATGGATGGCTTTGTGATCCAGTTGTTGTACTATATACTTGGAGTATGATCAGAATTGGAGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9503#0 AACAACTCCTTTCCATAACATTCCTTTAAAGAGGAGAAATCAACCTCTCCTATAACCTTG 60
consensus_9503#1 ------------------------------------------------------------
consensus_9503#2 ------------------------------------------------------------
consensus_9503#0 AAATATTTAACCCCAAGACTAGCCAACTGGCCATCCAAATCAAAGTAGTTAATCTATGGA 120
consensus_9503#1 ------------------------------------------------------------
consensus_9503#2 ------------------------------------------------------------
consensus_9503#0 TGAAGGAAAGAATGAGAAACACAACAACATAATATCTGTTGCTTCCTCCCCTGCTCCAAT 180
consensus_9503#1 ------------------------------------------------------------
consensus_9503#2 ------------------------------------------------------------
consensus_9503#0 CCTGCACCTGTAGACACATATCATATCCCCCCTACCAACAAATGCAAACATCTGCATGAC 240
consensus_9503#1 ------------------------------------------------------------
consensus_9503#2 ------------------------------------------------------------
consensus_9503#0 ATATATGTTCTCCCTATATATATACTAGATGTAGAATTAATTAAGTTATGATCGGTAAGG 300
consensus_9503#1 ------------------------------------------------------------
consensus_9503#2 ------------------------------------------------------------
consensus_9503#0 CACATGCATCATGCATGCATGCCTTTTGATCAGTTGTGTACTATATACTTGGAGTATGAT 360
consensus_9503#1 ------------------------------------------------------------
consensus_9503#2 ------------------------------------------------------------
consensus_9503#0 CAGACTTGGAGTTGTGACCAACTGATGAGAGCCCTAGCAAAGCTACAAGGCCGTGGTCTT 420
consensus_9503#1 ------------------------------------------------------------
consensus_9503#2 ------------------------------------------------------------
consensus_9503#0 GTAGTGGTGGTGGTGGTGGTGGTACAGATCCTGCAACTTCTTCCACGACTCCTCCCTCTG 480
consensus_9503#1 ------------------------------------------------------------
consensus_9503#2 ------------------------------------------------------------
consensus_9503#0 CATCTTGAGCTGCTTGTAGAAGTTGCCGATGAACGCCTCCGCCTTGGTGAACAGCTCTTG 540
consensus_9503#1 ------------------------------------------------------------
consensus_9503#2 ------------------------------------------------------------
consensus_9503#0 CTTGCTCATCATCTGCTCGCCGCCGCCCCC-GCCGCCGCCCTT-CGTCCAGCACCCTTCC 598
consensus_9503#1 ---------------TTCGCCGCCGCCCCCCGCCGCCGCCCNTTCGTCCAAGAACCTTTC 45
consensus_9503#2 ------------------------------------------------------------
consensus_9503#0 TCC--TCCTCGT--GGACGACGACGT-CCTCGCCGTCCCCG---CCCCCGATGAA-GAAG 649
consensus_9503#1 TTCCTTCCTCCTTGGAACGACGACCTTCCTCGCCCTTCCCCGCCCCCCCGATGAAAGAAG 105
consensus_9503#2 -------------------------------------------------GGGAAGACCAG 11
* * **
consensus_9503#0 AGGCT-CGCCCTCGA-CGGGCACCTCC--TCATCTT-CTTGGA--CTTCTTGGCCG--CC 700
consensus_9503#1 AAGCTTCGCCTTCGAACGGGCAACTTCCTTCATCTTTCTTGGAACTTTCTTGGCCCGCCC 165
consensus_9503#2 AAGAACTCCTTTCCA-----TAACATTTCTTACTTTAGGAGAA----ATCAAACTCTCCT 62
* * * ** * * * * * ** * * * *
consensus_9503#0 GCTGCC-GCCGGCATGGCACCGCCGGC-GATGACGACGACGTCCC--TGCTGCC-GGCTG 755
consensus_9503#1 GTTNCCCGCCGNCATGGCACCGCCGGCCGATGACGACGACCTTCCCTTGCTGCCCGGNTG 225
consensus_9503#2 ATAACCTTGAAATATTTAACCCCAAGACTA-GCCAACGGGCATCA----------AATCA 111
** ** *** * * * * * *** *
consensus_9503#0 CAGCCTCTAACGCCGCC-GCCTTCGGTGTCAAGG-ATGGTGAA-GCGGCC-ACAATTA-C 810
consensus_9503#1 CAGCCTCTAACGCCGCCCGCCTTCGGTGTCAAGGGATGTTGAAAGCGGCCCACAATTAAC 285
consensus_9503#2 AAGTAGTTAAT-CTATGGATGAAGGAAAGAATGAGAAACACAACAAGCATAATATCTGTG 170
** *** * * * * * ** * * * *
consensus_9503#0 AGCGCTGCTACTGCTACTACCGTTGAC-ATGGTGATGACGACCGTTGGTCGCCGCCGCAG 869
consensus_9503#1 AGCGCTGCTACTGCTACTACCGTTGAC-ATGGTGATGAN-ACCGTTGGTCGCCGCCGCAG 343
consensus_9503#2 GTTCCTCCCCGTGGTCCAATCCGTGACCGTGTAGACACATATCAT--ATCCCCCCTACCA 228
** * ** * * * * **** ** ** * * * ** ** * *
consensus_9503#0 CGACGTCGACTTCACCTGGTCTATTGCTGTGGCTCAGCCTCAGAGCTGCGGCGGCGGCGG 929
consensus_9503#1 CGACGTCGACTTCACCTGGTCTATTGCTGTGGCTCAGCCTCAGAGCTGCGGCGGCGGCGG 403
consensus_9503#2 ACAAAGTGGCAACATCTGGATGACATATATG-TTCTCCCTATATATTATNACTAGCATGT 287
* * * ** **** * * ** ** *** * * *
consensus_9503#0 CCGGCTTGGGCAGCAGCTTGTCGTCGCGCGGGCCGCTGGAGATGGCGGCGAGGAAGCCGG 989
consensus_9503#1 CCGGCTTGGGCAGCAGCTTGTCGTCGCGCGGGCCGCTGGAGATGGCGGCGAGGAAGCCGG 463
consensus_9503#2 AGACATTAATTA--AGTTCATGATCGGNAAGGCGACATGCGATCATGGGATGGA---TGG 342
** * ** * * *** *** * * *** ** *** **
consensus_9503#0 CCTCGACGCCGAGGGCGACGACGAGGGCGTTGAAGAGGAGGTAGAGGTAGGGCTGCCTGA 1049
consensus_9503#1 CCTCGACGCCGAGGGCGACGACGAGGGCGTTGAAGAGGAGGTAGAGGTAGGGCTGCCTGA 523
consensus_9503#2 CTTTGTGATCCAGTTGTTGTACTATATACTTGGAGTATGATCAGAATTGGAGTT------ 396
* * * * ** ** * *** ** *** * * * *
consensus_9503#0 GGGAGGAAGGCACCAAGGGGAGGAGGAGGTAGAGGAGGAGGAGGGACGCCATCTTGGCCA 1109
consensus_9503#1 GGGAGGAAGGCACCAAGGGGAGGAGGAGGNAGAGGAGGAGGAGGGACGCCATCTTGGCCA 583
consensus_9503#2 ------------------------------------------------------------
consensus_9503#0 CCTGGGCCAGCGTTGGAAACCTCTTCTTCTCCATGGCCATCACCATTTGTAGCTAGCTAA 1169
consensus_9503#1 CCTGGGCCAGCGTTGGAAACCTCTTCTTCTCCATGGCCATCACCATTTGTAGCTAGCTAA 643
consensus_9503#2 ------------------------------------------------------------
consensus_9503#0 GAAGACTA--------- 1177
consensus_9503#1 GGCTACTAGAGTCTAGG 660
consensus_9503#2 -----------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||