These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9506#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1627 fasta sequence [AAAAAAGAGAGAAAAAGATGGCACACGAGAGCGGCGACACTTTGCTTCGCTTGGGTTTCATCGTCGTCCCCTCCTCCTCCTTCCTTTGACCTCGGCTCGATCGACCATCCCGCGGAGGAGACGACGCCGCGGCGGCGGCGGAGGACTCGCCGGCGGCGGGGATGGACGTGCCGTGGCTGCTGGTGGCGCACGGGTCGGTGACGGCGCTGGTGGTGGTGTCCTTCCTCTGCGGGCAGTGGCCCATCTTCGAGGGCACC-TTCGTGCAGCGCATCAACCACTTCCTCACCTTCGGCGCCTACC-ACCACCTCCTGCGGCTCGTCCACGCGGCGTGCGGCAATGGGGCCAGGGATCTCGTCCTCGGCGTCGAGAGCTACTGCTGCGACCGGCCCAACCCGATCCTGCAGATTTTTTACGTTGCCATAATAGGGGTAACATATTTTATAATCGTCCAGACATCTTTCCAGTACATTCCTGGGTACTATGTGAGTGGACTGCACAGATACCTGAGTATCGTGGCTGTTGCTATTGGTGCTTTACTCTTCGTGCTGACTAGCTTTTCTGATCCTGGAACTGTCACTGCTGAGAATG-TTTCTCAATATCTATCTGCCTATCCATATGATGGCATCATTTTTGAGGAGAAAGAGTGTTCTACCTGCAAGATTGCCAGGCCAGCCAGGGCAAAGCACTGTAGAATATGTGATAAATGTGTTGCACGGTTTGATCACCACTGTGGATGGATGAATAACTGCATTGGGGAGAAAAATACTCGCTATTTTGTGGCCTTTTTAGTTTGGCATTTCCTTATATGTCTGTACGGAGCGGTTATTCTTGGTTTCATTCTTGCTGGTGAATTAAAAGAAAGGAAAGTTGTCTACATATTGACAGTTTATTATGGCATCGACAATTCATTCTCTGGGCTATTTCCACATGTTGCACAGTGGCTGCTTGCTGTGCATAACACACAGATACTCTTAGCGG-TCTTTTTGGCTATAATTGCATTGCTCCTTGGTGGGTTTTGTGCTTACCACACACATCTTTGCTTAACAAATACAACAACGAATGAGACATTCAAATGGCAAGACTATATTATGTGGAGGAAAAAGGTGAACGAGGAAAAGGCTGCTGCAAATGGTGAAGTGCGCAAATCGCCACCAAGCAAATGGAAGGCGTTTTTCTCTAGATCACATACTGAGGCCGATGAAACAATTGTGAAAAATAACATATATGACAGAGGCATGATTAGAAACATGTGCGAGGTGTTTGTCCCTTTGTCAGAACGGCAGTCATTTTCCCGCAAGAAATCTGATTGATCTGAATGCTGTTGCAGC-TTTGCACCTGTTGTATCACTTCTATGCTGTAAATCCTTGTAGAATATTAGAATCATTTTTTCCATACTAGAGAAGAAACAGTCTGAGGATGGTGATCAGGAGTGAGCATCACACAAGGAGACCCCCCACCAAAAAAAATTCAGATCTGCCCAAGTTGCTTTTGGTTTTGCTATCCTGGAATAGTAGGTTTGAACAACAGTATACTACCAAGAGTTGATAACTTACTTGATAGAATCTGTTGACAGCATATGGGAATGAGAATTGTACATTGTCTTGGTTATTTCTTTAAAAAAAAAAAA] [+] EMBL AK066313 [AAAAAAGAGAGAAAAAGATGGCACACGAGAGCGGCGACACTTTGCTTCGCTTGGGTTTCATCGTCGTCCCCTCCTCCTCCTTCCTTTGACCTCGGCTCGATCGACCATCCCGCGGAGGAGACGACGCCGCGGCGGCGGCGGAGGACTCGCCGGCGGCGGGGATGGACGTGCCGTGGCTGCTGGTGGCGCACGGGTCGGTGACGGCGCTGGTGGTGGTGTCCTTCCTCTGCGGGCAGTGGCCCATCTTCGAGGGCACC TTCGTGCAGCGCGTCAACCACTTCCTCACCTTCGGCGCCTACC ACCACCTCCTGCGGCTCGTCCACGCGGCGTGCGGCAATGGGGCCAGGGATCTCGTCCTCGGCGTCGAGAGCTACTGCTGCGACCGGCCCAACCCGATCCTGCAGATTTTTTACGTTGCCATAATAGGGGTAACATATTTTATAATCGTCCAGACATCTTTCCAGTACATTCCTGGGTACTATGTGAGTGGACTGCACAGATACCTGAGTATCGTGGCTGTTGCTATTGGTGCTTTACTCTTCGTGCTGACTAGCTTTTCTGATCCTGGAACTGTCACTGCTGAGAATG TTTCTCAATATCTATCTGCCTATCCATATGATGGCATCATTTTTGAGGAGAAAGAGTGTTCTACCTGCAAGATTGCCAGGCCAGCCAGGGCAAAGCACTGTAGAATATGTGATAAATGTGTTGCACGGTTTGATCACCACTGTGGATGGATGAATAACTGCATTGGGGAGAAAAATACTCGCTATTTTGTGGCCTTTTTAGTTTGGCATTTCCTTATATGTCTGTACGGAGCGGTTATTCTTGGTTTCATTCTTGCTGGTGAATTAAAAGAAAGGAAAGTTGTCTACATATTGACAGTTTATTATGGCATCGACAATTCATTCTCTGGGCTATTTCCACATGTTGCACAGTGGCTGCTTGCTGTGCATAACACACAGATACTCTTAGCGG TCTTTTTGGCTATAATTGCATTGCTCCTTGGTGGGTTTTGTGCTTACCACACACATCTTTGCTTAACAAATACAACAACGAATGAGACATTCAAATGGCAAGACTATATTATGTGGAGGAAAAAGGTGAACGAGGAAAAGGCTGCTGCAAATGGTGAAGTGCGCAAATCGCCACCAAGCAAATGGAAGGCGTTTTTCTCTAGATCACATACTGAGGCCGATGAAACAATTGTGAAAAATAACATATATGACAGAGGCATGATTAGAAACATGTGCGAGGTGTTTGTCCCTTTGTCAGAACGGCAGTCATTTTCCCGCAAGAAATCTGATTGATCTGAATGCTGTTGCAGC TTTGCACCTGTTGTATCACTTCTATGCTGTAAATCCTTGTAGAATATTAGAATCATTTTTTCCATACTAGAGAAGAAACAGTCTGAGGATGGTGATCAGGAGTGAGCATCACACAAGGAGACCCCCCACCAAAAAAAATTCAGATCTGCCCAAGTTGCTTTTGGTTTTGCTATCCTGGAATAGTAGGTTTGAACAACAGTATACTACCAAGAGTTGATAACTTACTTGATAGAATCTGTTGACAGCATATGGGAATGAGAATTGTACAT ] [+] EMBL AU078399 [ AAAAAGATGGCACACGAGAGCGGCGACACTTTGCTTCGCTTGGGTTTCATCGTCGTCCCCTCCTCCTCCTTCCTTTGACCTCGGCTCGATCGACCATCCCGCGGAGGAGACGACNCCGCGGCGGC GNGAAGGACTCGCCGGCGGNGGNGATNGACGTNCCGTGGCTGCTGGTGGCGCACGGGTCGGTGACAGCGCTGGTGGTGGTGTCCTTCCTCTGCGGGCAGTGGCCCATCTTCGAGGGCACCTTTCGTGCAGCGCATCAACCACTTCCTCAACTTCGGCGGCTACCAACAACTTCCTGCG ] [+] EMBL AK066352 [ TCGCTTGGGTTTCATCGTCGTCCCCTCCTCCTCCTTCCTTTGACCTCGGCTCGATCGACCATCCCGCGGAGGAGACGACGCCGCGGCGGCGGCGGAGGACTCGCCGGCGGCGGGGATGGACGTGCCGTGGCTGCTGGTGGCGCACGGGTCGGTGACGGCGCTGGTGGTGGTGTCCTTCCTCTGCGGGCAGTGGCCCATCTTCGAGGGCACC TTCGTGCAGCGCATCAACCACTTCCTCACCTTCGGCGCCTACC ACCACCTCCTGCGGCTCGTCCACGCGGCGTGCGGCAATGGGGCCAGGGATCTCGTCCTCGGCGTCGAGAGCTACTGCTGCGACCGGCCCAACCCGATCCTGCAGATTTTTTACGTTGCCATAATAGGGGTAACATATTTTATAATCGTCCAGACATCTTTCCAGTACATTCCTGGGTACTATGTGAGTGGACTGCACAGATACCTGAGTATCGTGGCTGTTGCTATTGGTGCTTTACTCTTCGTGCTGACTAGCTTTTCTGATCCTGGAACTGTCACTGCTGAGAATGTTTTCTCAATATCTATCTGCCTATCCATATGATGGCATCATTTTTGAGGAGAAAGAGTGTTCTACCTGCAAGATTGCCAGGCCAGCCAGGGCAAAGCACTGTAGAATATGTGATAAATGTGTTGCACGGTTTGATCACCACTGTGGATGGATGAATAACTGCATTGGGGAGAAAAATACTCGCTATTTTGTGGCCTTTTTAGTTTGGCATTTCCTTATATGTCTGTACGGAGCGGTTATTCTTGGTTTCATTCTTGCTGGTGAATTAAAAGAAAGGAAAGTTGTCTACATATTGACAGTTTATTATGGCATCGACAATTCATTCTCTGGGCTATTTCCACATGTTGCACAGTGGCTGCTTGCTGTGCATAACACACAGATACTCTTAGCGG TCTTTTTGGCTATAATTGCATTGCTCCTTGGTGGGTTTTGTGCTTACCACACACATCTTTGCTTAACAAATACAACAACGAATGAGACATTCAAATGGCAAGACTATATTATGTGGAGGAAAAAGGTGAACGAGGAAAAGGCTGCTGCAAATGGTGAAGTGCGCAAATCGCCACCAAGCAAATGGAAGGCGTTTTTCTCTAGATCACATACTGAGGCCGATGAAACAATTGTGAAAAATAACATATATGACAGAGGCATGATTAGAAACATGTGCGAGGTGTTTGTCCCTTTGTCAGAACGGCAGTCATTTTCCCGCAAGAAATCTGATTGATCTGAATGCTGTT ] [+] EMBL AU078400 [ cCACAGTGNCTGCTTGCTGTGCATAACACACAGATACTCTTAGCGGTTCTTTTTGNCTATAATTGCATTGCTCCTTGGTGGGTTTTGTGCTTACCACACACATCTTTGCTTAACAAATACAACAACGAATGAGACATTCAAATGGCAAGACTATATTATGTGGAGGAAAAAGGTGAACGAGGAAAAGGCTGCTGCAAATGGTGAAGTGCGCAAATCGCCACCAAGCAAATGGAAGGCGTTTTTCTCTAGATCACATACTGAGGCCGATGAAACAATTGTGAAAAATAACATATATGACAGAGGCATGATTAGAAACATGTGCGAGGTGTTTGTCCCTTTGTCAGAACGGCAGTCATTTTCCCGCAAGAAATCTGATTGATCTGAATGCTGTTGCAGC TTTGCACCTGTTGTATCACTTCTATGCTGTAAATCCTTGTAGAATATTAGAATCATTTTTTCCATACTAGAGAAGAAACAGTCTGAGGATGGTGATCAGGAGTGAGCATCACACAAGGAGACCCCCCACC AAAAAAATTCAGATCTGCCCAAGTTGCTTTTGGTTTTGCTCTCCTGGAATAGTAGGTTTGAACAACAGTATACTACCAAGAGTTGATAACTTACTTGATAGAATCTGTTGACAGCATATGGGAATGAGAATTGTACATTGTCTTGGTTATTTCTTTAAAAAAAAAAAA] [+] EMBL OSC31282 [ TGTGCTTACCACACACATCTTTGCTTAACAAATACAACAACGAATGAGACATTCAAATGGCAAGACTATATTATGTGGAGGAAAAAGGTGAACGAGGAAAAGGCTGCTGCAAATGGTGAAGTGCGCAAATCGCCACCAAGCAAATGGAAGGCGTTTTTCTCTAGATCACATACTGAGGCCGATGAAACAATTGTGAAAAATAACATATATGACAGAGGCATGATTAGAAACATGTGCGAGGTGTTTGTCCCTTTGTCAGAACGGCAGTCATTTTCCCGCAAGGAATCTGATTGATCTGAAT CTGTTGCAGCTTTTGCACCT ] consensusID : consensus_9506#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 675 fasta sequence [TCCCGCGGACGAGACGACCCCCGCGCGCGGCTTGTGGAGGACTCCCCCGCGGTGGGGATGGACGTGCCCCGGCTGCTGGTGGCGCACGGGTCTGTGACGGCACCTTCCTGCAGCGCATCAACCACTTCCTCACCTTCGGCGCCTACCACCGCCTCCTGCGGCTCGTCCACGCGGCGTGCGGCAATGGGGCCAGGGATCTCGTCCTCGGCGTCGAGAGCTACTGCTGCGACCGGCCCAACCCGATCCTGCAGATTTTTTACGTTGCCATAATAGGGGTAACATATTTTATAATCGTCCCGACATCTTTCCAGTACATTCCTGGGTACTATGTGAGTGGACTGCACAGATACCTGAGTATCGTGGCTGTTGCTATTGGTGCTTTACTCTTCGTGCTGACTAGCTTTTCTGATCCTGGAACTGTCACTGCTGAGAATGTTTCTCAATATCTATCTGCCTATCCATATGATGGCATCATTTTTGAGGAGAAAGAGTGTTCTACCTGCAAGATTGCCAGGCCAGCCAGGGCAAAGCACTGTAGAATATGTGATAAATGTGTTGCACGGTTTGATCACCACTGTGGATGGATGAATAACTGCATTGGGGAGAAAAATACTCGCTATTTTGTGGCCTTTTTAGTTTGGCATTTCCTTATATGTCTGTACGGAGCGGTTATTC] [+] EMBL CB642661 [TCCCGCGGACGAGACGACCCCCGCGCGCGGCTTGTGGAGGACTCCCCCGCGGTGGGGATGGACGTGCCCCGGCTGCTGGTGGCGCACGGGTCTGTGACGGCACCTTCCTGCAGCGCATCAACCACTTCCTCACCTTCGGCGCCTACCACCGCCTCCTGCGGCTCGTCCACGCGGCGTGCGGCAATGGGGCCAGGGATCTCGTCCTCGGCGTCGAGAGCTACTGCTGCGACCGGCCCAACCCGATCCTGCAGATTTTTTACGTTGCCATAATAGGGGTAACATATTTTATAATCGTCCCGACATCTTTCCAGTACATTCCTGGGTACTATGTGAGTGGACTGCACAGATACCTGAGTATCGTGGCTGTTGCTATTGGTGCTTTACTCTTCGTGCTGACTAGCTTTTCTGATCCTGGAACTGTCACTGCTGAGAATGTTTCTCAATATCTATCTGCCTATCCATATGATGGCATCATTTTTGAGGAGAAAGAGTGTTCTACCTGCAAGATTGCCAGGCCAGCCAGGGCAAAGCACTGTAGAATATGTGATAAATGTGTTGCACGGTTTGATCACCACTGTGGATGGATGAATAACTGCATTGGGGAGAAAAATACTCGCTATTTTGTGGCCTTTTTAGTTTGGCATTTCCTTATATGTCTGTACGGAGCGGTTATTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9506#0 AAAAAAGAGAGAAAAAGATGGCACACGAGAGCGGCGACACTTTGCTTCGCTTGGGTTTCA 60 consensus_9506#1 ------------------------------------------------------------ consensus_9506#0 TCGTCGTCCCCTCCTCCTCCTTCCTTTGACCTCGGCTCGATCGACCATCCCGCGGAGGAG 120 consensus_9506#1 -----------------------------------------------TCCCGCGGACGAG 13 ********* *** consensus_9506#0 ACGACGCC-GCG-GCGGCG-GCGGAGGACTCGCCGGCGGCGGGGATGGACGTGCCGTGGC 177 consensus_9506#1 ACGACCCCCGCGCGCGGCTTGTGGAGGACTCCCCCGCGGTGGGGATGGACGTGCCCCGGC 73 ***** ** *** ***** * ********* ** **** *************** *** consensus_9506#0 TGCTGGTGGCGCACGGGTCGGTGACGGCGCTGGTGGTGGTGTCCTTCCTCTGCGGGCAGT 237 consensus_9506#1 TGCTGGTGGCGCACGGGTCTGTGACGG--------------------------------- 100 ******************* ******* consensus_9506#0 GGCCCATCTTCGAGGGCACCTTCGTGCAGCGCATCAACCACTTCCTCACCTTCGGCGCCT 297 consensus_9506#1 ----------------CACCTTCCTGCAGCGCATCAACCACTTCCTCACCTTCGGCGCCT 144 ******* ************************************ consensus_9506#0 ACCACCACCTCCTGCGGCTCGTCCACGCGGCGTGCGGCAATGGGGCCAGGGATCTCGTCC 357 consensus_9506#1 ACCACCGCCTCCTGCGGCTCGTCCACGCGGCGTGCGGCAATGGGGCCAGGGATCTCGTCC 204 ****** ***************************************************** consensus_9506#0 TCGGCGTCGAGAGCTACTGCTGCGACCGGCCCAACCCGATCCTGCAGATTTTTTACGTTG 417 consensus_9506#1 TCGGCGTCGAGAGCTACTGCTGCGACCGGCCCAACCCGATCCTGCAGATTTTTTACGTTG 264 ************************************************************ consensus_9506#0 CCATAATAGGGGTAACATATTTTATAATCGTCCAGACATCTTTCCAGTACATTCCTGGGT 477 consensus_9506#1 CCATAATAGGGGTAACATATTTTATAATCGTCCCGACATCTTTCCAGTACATTCCTGGGT 324 ********************************* ************************** consensus_9506#0 ACTATGTGAGTGGACTGCACAGATACCTGAGTATCGTGGCTGTTGCTATTGGTGCTTTAC 537 consensus_9506#1 ACTATGTGAGTGGACTGCACAGATACCTGAGTATCGTGGCTGTTGCTATTGGTGCTTTAC 384 ************************************************************ consensus_9506#0 TCTTCGTGCTGACTAGCTTTTCTGATCCTGGAACTGTCACTGCTGAGAATGTTTCTCAAT 597 consensus_9506#1 TCTTCGTGCTGACTAGCTTTTCTGATCCTGGAACTGTCACTGCTGAGAATGTTTCTCAAT 444 ************************************************************ consensus_9506#0 ATCTATCTGCCTATCCATATGATGGCATCATTTTTGAGGAGAAAGAGTGTTCTACCTGCA 657 consensus_9506#1 ATCTATCTGCCTATCCATATGATGGCATCATTTTTGAGGAGAAAGAGTGTTCTACCTGCA 504 ************************************************************ consensus_9506#0 AGATTGCCAGGCCAGCCAGGGCAAAGCACTGTAGAATATGTGATAAATGTGTTGCACGGT 717 consensus_9506#1 AGATTGCCAGGCCAGCCAGGGCAAAGCACTGTAGAATATGTGATAAATGTGTTGCACGGT 564 ************************************************************ consensus_9506#0 TTGATCACCACTGTGGATGGATGAATAACTGCATTGGGGAGAAAAATACTCGCTATTTTG 777 consensus_9506#1 TTGATCACCACTGTGGATGGATGAATAACTGCATTGGGGAGAAAAATACTCGCTATTTTG 624 ************************************************************ consensus_9506#0 TGGCCTTTTTAGTTTGGCATTTCCTTATATGTCTGTACGGAGCGGTTATTCTTGGTTTCA 837 consensus_9506#1 TGGCCTTTTTAGTTTGGCATTTCCTTATATGTCTGTACGGAGCGGTTATTC--------- 675 *************************************************** consensus_9506#0 TTCTTGCTGGTGAATTAAAAGAAAGGAAAGTTGTCTACATATTGACAGTTTATTATGGCA 897 consensus_9506#1 ------------------------------------------------------------ consensus_9506#0 TCGACAATTCATTCTCTGGGCTATTTCCACATGTTGCACAGTGGCTGCTTGCTGTGCATA 957 consensus_9506#1 ------------------------------------------------------------ consensus_9506#0 ACACACAGATACTCTTAGCGGTCTTTTTGGCTATAATTGCATTGCTCCTTGGTGGGTTTT 1017 consensus_9506#1 ------------------------------------------------------------ consensus_9506#0 GTGCTTACCACACACATCTTTGCTTAACAAATACAACAACGAATGAGACATTCAAATGGC 1077 consensus_9506#1 ------------------------------------------------------------ consensus_9506#0 AAGACTATATTATGTGGAGGAAAAAGGTGAACGAGGAAAAGGCTGCTGCAAATGGTGAAG 1137 consensus_9506#1 ------------------------------------------------------------ consensus_9506#0 TGCGCAAATCGCCACCAAGCAAATGGAAGGCGTTTTTCTCTAGATCACATACTGAGGCCG 1197 consensus_9506#1 ------------------------------------------------------------ consensus_9506#0 ATGAAACAATTGTGAAAAATAACATATATGACAGAGGCATGATTAGAAACATGTGCGAGG 1257 consensus_9506#1 ------------------------------------------------------------ consensus_9506#0 TGTTTGTCCCTTTGTCAGAACGGCAGTCATTTTCCCGCAAGAAATCTGATTGATCTGAAT 1317 consensus_9506#1 ------------------------------------------------------------ consensus_9506#0 GCTGTTGCAGCTTTGCACCTGTTGTATCACTTCTATGCTGTAAATCCTTGTAGAATATTA 1377 consensus_9506#1 ------------------------------------------------------------ consensus_9506#0 GAATCATTTTTTCCATACTAGAGAAGAAACAGTCTGAGGATGGTGATCAGGAGTGAGCAT 1437 consensus_9506#1 ------------------------------------------------------------ consensus_9506#0 CACACAAGGAGACCCCCCACCAAAAAAAATTCAGATCTGCCCAAGTTGCTTTTGGTTTTG 1497 consensus_9506#1 ------------------------------------------------------------ consensus_9506#0 CTATCCTGGAATAGTAGGTTTGAACAACAGTATACTACCAAGAGTTGATAACTTACTTGA 1557 consensus_9506#1 ------------------------------------------------------------ consensus_9506#0 TAGAATCTGTTGACAGCATATGGGAATGAGAATTGTACATTGTCTTGGTTATTTCTTTAA 1617 consensus_9506#1 ------------------------------------------------------------ consensus_9506#0 AAAAAAAAAA 1627 consensus_9506#1 ---------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||