cluster # 9507

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Oryza sativa
cluster # 9507 cluster # 9507 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9507#0 length = 630 sequences # 5

consensus_9507#1 length = 322 sequences # 1

consensusID : consensus_9507#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 630
fasta sequence

                              [CAAAACACATAAGAGAAATTCAATAATTACACACAAAAAAAATAAGGCATAAGAAGGCAGCTGCAGCTGCTAGCTGCTGTTGTTGTTGGTAGTAGTTTTTTGGGCACCAATTTTCCATGGAGACGAAGGTGAGGATGAGCTGCAGGTTGGGCACTATGGTGGCCCTGGTGCTGGTGGGCGTCGTGCTGGCGGCGATCCTGCAGGAGGCCACCGTCGACGCGGCATCGTCCAGCAGCGACTCGCCGGCGGCGAAATCGGGCACCGGCTACCTCGACTACGGCAACCTCAAGGCGAAGCTG-CCTCCACCGGGCGTCGCCGTTACCAAGAGGCCATGCATAGCAAAAGAGAAATGCCGCGGC-TGATCGATCGATCGATCGATCATCACCGACGTACCCAGACGGA-TGAAACGGATCGACGTACGTAC-TGCTTATGGTGTCAG-CGTGTTCTTGTTTTTTTTTTCTTTTCTTTTCTTTCTTTCCGATGGAATTGAAACGTGTGTGTTCTTGTTTTTCTTCTTCTCATGGCATCGCCTTGGCTTTCTATATATAATGAGGTTTTTAATGTCACTAATTAATTAACCACCTGGGATATATAGGCCACATTGGTGAAAATCCAAAAAAAAAAAAAAAA]

[+] EMBL AK106951             [CAAAACACATAAGAGAAATTCAATAATTACACACAAAAAAAATAAGGCATAAGAAGGCAGCTGCAGCTGCTAGCTGCTGTTGTTGTTGGTAGTAGTTTTTTGGGCACCAATTTTCCATGGAGACGAAGGTGAGGATGAGCTGCAGGTTGGGCACTATGGTGGCCCTGGTGCTGGTGGGCGTCGTGCTGGCGGCGATCCTGCAGGAGGCCACCGTCGACGCGGCATCGTCCAGCAGCGACTCGCCGGCGGCGAAATCGGGCACCGGCTACCTCGACTACGGCAACCTCAAGGCGAAGCTG CCTCCACCGGGCGTCGCCGTTACCAAGAGGCCATGCATAGCAAAAGAGAAATGCCGCGGC TGATCGATCGATCGATCGATCATCACCGACGTACCCAGACGGA TGAAACGGATCGACGTACGTAC TGCTTATGGTGTCAG CGTGTTCTTGTTTTTTTTTTCTTTTCTTTTCTTTCTTTCCGATGGAATTGAAACGTGTGTGTTCTTGTTTTTCTTCTTCTCATGGCATCGCCTTGGCTTTCTATATATAATGAGGT                                                                           ]
[+] EMBL AU078656             [                     AATAATTACACNCAAAAAAAATAAGGCATAAGAAGGCAGCTGCAGCTGCTAGCTGCTGTTGTTGTTGGTAGTAGTTTTTTGGGCACCAATTTTCCATGGAGACGAAGGTGAGGATGAGCTGCAGGTTGGGCACTATGGTGGCCCTGGTGCTGGTGGGCGTCGTGCTGGCGGCGATCCTGCAGGAGGCCACCGTCGACGCGGCATCGTCCAGCAGCGACTCGCCGGCGGCGAAATCGGGCACCGGCTACCTCGACTACGGCAACCTCAAGGCGAAGCTG CCTCCACCGGGCGTCGCCGTTACCAAGAGGCCATGCATAGCAAAAGAGAAATGCCGCGGC TGATCGATCGATCGATCGATCATCACCGACGTACCCAGACGGA TGAAACGGATCGACGTACGTAC TGCTTATGGTGTCAG CGTGTTCTTGTTTTTTTTTTCTTTTCTTTTCTTTCTTTCCGATGGAATTGAAACGTGTGTGTTCTTGTTTTTCTTCTTCTCATGGCATCGCCTTGGCTTTCTATATATAATGAGGTTTTTAATGTCACTAATTAATTAACCACCTGGGATATATAGGCCACATTGGTGAAAATCCAAAAAAAAAAAAAAAA]
[+] EMBL C73345               [                     AATAATTACACACAAAAAAAATAAGGCATAAGAAGGCAGCTGCAGCT CTAGCT CTGTTGTTGTTGGTAGTAGTTTTTTGGGCACCAATTTTCCATGGAGACGAAGGTGAGGATGAGCTGCAGGTTGGGCACTATGGTGGCCCTGGTGCTGGTGGGCGTCGTGCTGGCGGCGATCCTGCAGGAGGCCACCGTCGACGCGGCATCGTCCAGCAGCGACTCGCCGGCGGGAAAATCGGGCACCGGCTACCTCGACTACGGCAACCTCAAGGCGAAGTTGCCCTCCACCGGGCGTCGCCGTTACCAAGAGGCCATGCATA                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU078660             [                              ACACAAAAAAAATAAGGCATAAGAAGGCAGCTGCAGCTGCTAGCTGCTGTTGTTGTTGGTAGTAGTTTTTTGGGCACCAATTTTCCATGGAGACGAAGGTGAGGATGAGCTGCAGGTTGGGCACTATGGTGGCCCTGGTGCTGGTGGGCGTCGTGCTGGCGGCGATCCTGCAGGAGGCCACCGTCGACGCGGCATCGTCCAGCAGCGACTCGCCGGCGGCGAAATCGGGCACCGGCTACCTCGACTACGGCAACCTCAAGGCGAAGCTG CCTCCACCGGGCGTCGCCGTTACCAAGA GCCATGCATAGCAAAAGAGAAATGCCGCGGC TGATCGATCGATCGATCGATCATCACCGACGTACCCAGACGGA TGAAACGGATCGACGTACGTAC TGNTTATGGTGTCAGCCGTGTTCTTGGTTTTTTTTTCTTTTCTTTTCTTTCTTTCCGATGGAATTGAAACGTGTGTGTTCTTGGTTTTCTTCTTCTCATGGCATCGNCTTGGCTTTCTATATA                                                                                    ]
[+] EMBL C72945               [                                                                                                                                                                                                  ATCCTGCAGGAGGCCACCGTCGACGCGGCATCGTCCAGCAGCGACTCGCCGGCGGCAAANTCGGGCACCGGCTACCTCGACTACGGCAACCTCAAGGCGAA NTG CCTCCACCGGGCGTCGCCGTTACCAAGAGGCCATGCATAGCAAAAGAGAAATGCCGCGGCTTGATCGATCGATCGATCGATCATCACCGACGTACCCAGACGGATTGAAACGGATCGACGTACGTACTTGCTTATGGTGTCAG CGTGTTCTTGTTTTTTTTTTCTTTTCTTTTCTTTCTTTCCGATGG ATTG AACGTGTGTGTTCTTGGTTTTCTTCTTCCCANGGCATC                                                                                                      ]




>consensus_9507#0
CAAAACACATAAGAGAAATTCAATAATTACACACAAAAAAAATAAGGCATAAGAAGGCAG
CTGCAGCTGCTAGCTGCTGTTGTTGTTGGTAGTAGTTTTTTGGGCACCAATTTTCCATGG
AGACGAAGGTGAGGATGAGCTGCAGGTTGGGCACTATGGTGGCCCTGGTGCTGGTGGGCG
TCGTGCTGGCGGCGATCCTGCAGGAGGCCACCGTCGACGCGGCATCGTCCAGCAGCGACT
CGCCGGCGGCGAAATCGGGCACCGGCTACCTCGACTACGGCAACCTCAAGGCGAAGCTGC
CTCCACCGGGCGTCGCCGTTACCAAGAGGCCATGCATAGCAAAAGAGAAATGCCGCGGCT
GATCGATCGATCGATCGATCATCACCGACGTACCCAGACGGATGAAACGGATCGACGTAC
GTACTGCTTATGGTGTCAGCGTGTTCTTGTTTTTTTTTTCTTTTCTTTTCTTTCTTTCCG
ATGGAATTGAAACGTGTGTGTTCTTGTTTTTCTTCTTCTCATGGCATCGCCTTGGCTTTC
TATATATAATGAGGTTTTTAATGTCACTAATTAATTAACCACCTGGGATATATAGGCCAC
ATTGGTGAAAATCCAAAAAAAAAAAAAAAA

consensusID : consensus_9507#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 322
fasta sequence

                              [AAGGCGAAGCTGCCTCCACCGGGCGTCGCCGTTACCAANAGGCCATGCATAGCAAAANAGAAATGCCNCGGCTGATCGATCGATCGATCGATCATCACCGACGTACCCAGACGGATGAAACGGATCGACGTACGTACTGCTTATGGNGTCAGCGTGTTCTTGTTTTTTTTTTCTTTTCTTTTCTTTCTTTCCGATGGAATTGAAACGTGTGTGTTCTTGTTTTTCTTCTTCTCATGGCATCGCCTTGGCTTTCTATATATAATGAGGTTTTTAATGTCACTAATTAATTAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU078661             [AAGGCGAAGCTGCCTCCACCGGGCGTCGCCGTTACCAANAGGCCATGCATAGCAAAANAGAAATGCCNCGGCTGATCGATCGATCGATCGATCATCACCGACGTACCCAGACGGATGAAACGGATCGACGTACGTACTGCTTATGGNGTCAGCGTGTTCTTGTTTTTTTTTTCTTTTCTTTTCTTTCTTTCCGATGGAATTGAAACGTGTGTGTTCTTGTTTTTCTTCTTCTCATGGCATCGCCTTGGCTTTCTATATATAATGAGGTTTTTAATGTCACTAATTAATTAACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_9507#1
AAGGCGAAGCTGCCTCCACCGGGCGTCGCCGTTACCAANAGGCCATGCATAGCAAAANAG
AAATGCCNCGGCTGATCGATCGATCGATCGATCATCACCGACGTACCCAGACGGATGAAA
CGGATCGACGTACGTACTGCTTATGGNGTCAGCGTGTTCTTGTTTTTTTTTTCTTTTCTT
TTCTTTCTTTCCGATGGAATTGAAACGTGTGTGTTCTTGTTTTTCTTCTTCTCATGGCAT
CGCCTTGGCTTTCTATATATAATGAGGTTTTTAATGTCACTAATTAATTAACCAAAAAAA
AAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9507#0      CAAAACACATAAGAGAAATTCAATAATTACACACAAAAAAAATAAGGCATAAGAAGGCAG 60
consensus_9507#1      ------------------------------------------------------------
                                                                                  

consensus_9507#0      CTGCAGCTGCTAGCTGCTGTTGTTGTTGGTAGTAGTTTTTTGGGCACCAATTTTCCATGG 120
consensus_9507#1      ------------------------------------------------------------
                                                                                  

consensus_9507#0      AGACGAAGGTGAGGATGAGCTGCAGGTTGGGCACTATGGTGGCCCTGGTGCTGGTGGGCG 180
consensus_9507#1      ------------------------------------------------------------
                                                                                  

consensus_9507#0      TCGTGCTGGCGGCGATCCTGCAGGAGGCCACCGTCGACGCGGCATCGTCCAGCAGCGACT 240
consensus_9507#1      ------------------------------------------------------------
                                                                                  

consensus_9507#0      CGCCGGCGGCGAAATCGGGCACCGGCTACCTCGACTACGGCAACCTCAAGGCGAAGCTGC 300
consensus_9507#1      -----------------------------------------------AAGGCGAAGCTGC 13
                                                                     *************

consensus_9507#0      CTCCACCGGGCGTCGCCGTTACCAAGAGGCCATGCATAGCAAAAGAGAAATGCCGCGGCT 360
consensus_9507#1      CTCCACCGGGCGTCGCCGTTACCAANAGGCCATGCATAGCAAAANAGAAATGCCNCGGCT 73
                      ************************* ****************** ********* *****

consensus_9507#0      GATCGATCGATCGATCGATCATCACCGACGTACCCAGACGGATGAAACGGATCGACGTAC 420
consensus_9507#1      GATCGATCGATCGATCGATCATCACCGACGTACCCAGACGGATGAAACGGATCGACGTAC 133
                      ************************************************************

consensus_9507#0      GTACTGCTTATGGTGTCAGCGTGTTCTTGTTTTTTTTTTCTTTTCTTTTCTTTCTTTCCG 480
consensus_9507#1      GTACTGCTTATGGNGTCAGCGTGTTCTTGTTTTTTTTTTCTTTTCTTTTCTTTCTTTCCG 193
                      ************* **********************************************

consensus_9507#0      ATGGAATTGAAACGTGTGTGTTCTTGTTTTTCTTCTTCTCATGGCATCGCCTTGGCTTTC 540
consensus_9507#1      ATGGAATTGAAACGTGTGTGTTCTTGTTTTTCTTCTTCTCATGGCATCGCCTTGGCTTTC 253
                      ************************************************************

consensus_9507#0      TATATATAATGAGGTTTTTAATGTCACTAATTAATTAACCACCTGGGATATATAGGCCAC 600
consensus_9507#1      TATATATAATGAGGTTTTTAATGTCACTAATTAATTAACCAA------------------ 295
                      *****************************************                   

consensus_9507#0      ATTGGTGAAAATCCAAAAAAAAAAAAAAAA 630
consensus_9507#1      ---AAAAAAAAAAAAAAAAAAAAAAAAAAA 322
                             ****   ****************