These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9512#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 707 fasta sequence [CCTGCCGTGCCAGGGCATCCAGCTGCACAACGTCGACCTCAAGTACGCCGGCCAAGGGAACACCACCCTCTCCGTCTGCAAGAACGTCGCCGGCAAGTCCAGCAACGTCGCCAAGGAGCTCGCCTGCGTCTGATTTTCATCTTATTATACTACTCTTCCGTTTCATATTACAAAGTCATTTGTTTTTTTTTAAAGCCAATTTTTTCAAAGTTTGACCAAAGTTTTTTAAAAAATATAGTAGTATTTTCAATATGAAAAGAACATATTATCAGAATATATTTCATATTGGATTTAATTAGACTAATTTAATATTTTATATGTTGCTATATTTTTTTTATAAATTTGTTTAAACTAAATAAAAATTGACTAGAAAAAGTCAAACAACTTATAATATGAAATGGAGATAGGGGGAGTAATTGTCGTCTGATTATATAGTTGTAAGTTAATCATCGTTCCCTCCGCTACATTCCCCTCACTTGTATTCTTCATCTAATTATTTTCCTCTCTCTCCCTCTTCGGATTTTTTTAATTATTTTCTTCTATTTAAAAATATGTTTGCTTCTTCTTCGTTTGGAATATATGATTCTTGTCCTGATTTCATTTCATTTAGTTTACTCGTTAATTGATTTATTAATTAATTGTTATCCGTTTAGTTGTCGTAGTTTAATCTCTTCAGTTCAATTATTTTTTTGTTTGATTCTTAAAAA] [+] EMBL AU222575 [CCTGCCGTGCCAGGGCATCCAGCTGCACAACGTCGACCTCAAGTACGCCGGCCAAGGGAACACCACCCTCTCCGTCTGCAAGAACGTCGCCGGCAAGTCCAGCAACGTCGCCAAGGAGCTCGCCTGCGTCTGATTTTCATCTTATTATACTACTCTTCCGTTTCATATTACAAAGTCATTTGTTTTTTTTTAAAGCCAATTTTTTCAAAGTTTGACCAAAGTTTTTTAAAAAATATAGTAGTATTTTCAATATGAAAAGAACATATTATCAGAATATATTTCATATTGGATTTAATTAGACTAATTTAATATTTTATATGTTGCTATATTTTTTTTATAAATTTGTTTAAACTAAATAAAAATTGACTAGAAAAAGTCAAACAACTTATAATATGAAATGGAGATAGGGGGAGTAATTGTCGTCTGATTATATAGTTGTAAGTTAATCATCGTTCCCTCCGCTACATTCCCCTCACTTGTATTCTTCATCTAATTATTTTCCTCTCTCTCCCTCTTCGGATTTTTTTAATTATTTTCTTCTATTTAAAAA ] [+] EMBL CA765557 [ gtGTTAATCATCGTTCCCTCCGCTACATTCCCCTCACTTGTATTCTTCATCTAACTATTTTCCTCTCTCTCCCTCTTCGGATTTTTTTAATTATTTTCTTCTATTTATTTTTATGTTTGCTTCTTCTTCGTTTGGAATATATGATTCTTGTCCTGATTTCATTTCATTTAGTTTACTCGTTAATTGATTTATTAATTAATTGTTATCCGTTTAGTTGTCGTAGTTTAATCTCTTCAGTTCAATTATTTTTTTGTTTGATTCTTAAAAA] consensusID : consensus_9512#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 618 fasta sequence [TGGAGGACATCATGGTCACCAANTGCACGAATAAAGGGCACCACGAACGGGCTTCCGGATCAAGTCGTACGAGGACTCCAAGTCGCAGCTGAGGGCGACCAAGTTCCTGTACGACGGCATCACCATGGACGAACGTGAGCTACCCGATCATCATCGACCAGAAGTACTGCCCCAACAACATCTGCTCCGCGTCCGGCACGTCCAAGGTCGCCGTCACCGACATGGTCTTCAAGAACATCGTCGGCACGTCGGCGACGCCCGAGGCCGTCACGCTCAACTGCGCCAACAACCTGCCGTGCCAGGGCATCCAGCTGCACAACGTCGACCTCAAGTACGCCGGCCAAGGGAACACCACCCTCTCCGTNTGCAANAACGTCGCCGGCAAGTCCAGCAACGTCGCCAAGGAGCTCGCCTGCGTCTGATTTTCATCTTATTANACTACTCTTCCGTTTCATATTACAAAGTCATTTGTTTTTTTTTAAAGCCAATTTTTTCAAAGTTTGACCAAAGTTTTTTAAAAAATATAGTAGTATTTTCAATATGAAAAGAACATATTATCAGAATATATTTCATATTGGATTTAATTAGACTAATTTAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU082676 [TGGAGGACATCATGGTCACCAANTGCACGAATAAAGGGCACCACGAACGGGCTTCCGGATCAAGTCGTACGAGGACTCCAAGTCGCAGCTGAGGGCGACCAAGTTCCTGTACGACGGCATCACCATGGACGAACGTGAGCTACCCGATCATCATCGACCAGAAGTACTGCCCCAACAACATCTGCTCCGCGTCCGGCACGTCCAAGGTCGCCGTCACCGACATCGTCTTCAAGAACATCGTCGGCACGTCGGCGACGCCCGAGGCCGTCACGCTCAACTGCGCCAACAACCTGCCGTGCCAGGGCATCCAGCTGCACAACGTCGACCTCAAGTACGCCGGCCAAGGGAACACCACCCTCTCCGTCTGCAAGAACGTCGCCGGCAAGTCCAGCAACGTCGCCAAGGAGCTCGCCTGCGTCTGATTTTCATCTTATTATACTACTCTTCCGTTTCATATTACAAAGTCATTTGTTTTTTTTTAAAGCCAATTTTTTCAAAGTTTGACCAAAGTTTTTTAAAAAATATAGTAGTATTTTCAATATGAAAAGAACATATTATCAGAATATATTTCATATTGGATTTAATTAGACTAATTTAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU172897 [ GCGTCCGGCACGTCCAAGGTCGCCGTCACCGACATGGTCTTCAAGAACATCGTCGGCACGTCGGCGACGCCCGAGGCCGTCACGCTCAACTGCGCCAACAACCTGCCGTGCCAGGGCATCCAGCTGCACAACGTCGACCTCAAGTACGCCGGCCAAGGGAACACCNCCCTCTCCGTNTGCAANAACGTCGCCGGCAAGTCCAGCAACGTCGCCAAGGAGCTCGCCTGCGTCTGATTTTCATCTTATTANACTACTCTTCCGTTTCATATTACAAAGTCATTTGTTTTTTTTTAAAGCCAATTTTTTCAAAGTTTGACCAAAGTTTTTTAAAAAATATAGTAGTATTTTCAATATGAAAAGAACATATTATCAGAATATATTTCATATTGGATTTAATTAGNCTAATTTAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU172932 [ CACGTCCAAGGTCGCCGTCACCGACATGGTCTTCAAGAACATCGTCGGCACGTCGGCGACGCCCNAGGCCGTCACGCTCAACTGCGCCAACAACCTGCCGTGCCAGGGCATCCAGCTGCACAACGTCGACCTCAAGTACGCCGGCCAAGGGAACACCACCCTCTCCGTNTGCAANAACGTCGCCGGCAAGTCCAGCAACGTCGCCAAGGAGCTCGCCTGCGTCTGATTTTCATCTTATTANACTACTCTTCCGTTTCATATTACAAAGTCATTTGTTTTTTTTTAAAGCCAATTTTTTCAAAGTTTGACCAAAGTTTTTTAAAAAATATAGTAGTATTTTCAATATGAAAAGAACATATTATCAGAATATATTTCATATTGGATTTAATTAGACTNATTTAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_9512#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 597 fasta sequence [GACGAGACAAGGGGCTCGCCTGCGTCTGATTTTNTCCTATATATTATACTACTCTTCCGTTTCATATTACAAAGTCATTTGTTTTTTTTAAAGCCCTTTTTTTAAAGTTTGACCAAAGTTTTTTAAAAAATATAGTAGTATTTTCAATATGAAAAGAACATATTATCAGAATATATTTCATATTGGATTTAATTATACTAATTTAATATTTTATATGTTGCTACATTTTTTTTATAAATTTGTTAGAAAAAGTCAAACAACTTATAATATGAAATGGAGATAGGGGGAGTAATTGTGTTAATCATCGTTCCCTCCGCCACATTCCCCTCACTTGTATTCTTCATCTAATTATTTTCCTCTCTCTCCCTCTTCGGATTTTTTTAATTATTTTCTTCTATTTATTTTTATGTTTGCTTCTTCTTCGTTTGGAATATATGATTCTTGTCCTGATTTCATTTCATTTAGTTTACTCGTTAATTGATTTATTAATTAATTGTTATCCGTTTAGTTGTCGTAGTTTAATCTCTTCAGTTCAATTATTTTTTTGTTTTGAAAAGAAGAAAAAAAAATTAAAAAAAAAAAAAAAAAAAATGAAAA] [+] EMBL CA766174 [GACGAGACAAGGGGCTCGCCTGCGTCTGATTTTNTCCTATATATTATACTACTCTTCCGTTTCATATTACAAAGTCATTTGTTTTTTTTAAAGCCCTTTTTTTAAAGTTTGACCAAAGTTTTTTAAAAAATATAGTAGTATTTTCAATATGAAAAGAACATATTATCAGAATATATTTCATATTGGATTTAATTATACTAATTTAATATTTTATATGTTGCTACATTTTTTTTATAAATTTGTTAGAAAAAGTCAAACAACTTATAATATGAAATGGAGATAGGGGGAGTAATTGTGTTAATCATCGTTCCCTCCGCCACATTCCCCTCACTTGTATTCTTCATCTAATTATTTTCCTCTCTCTCCCTCTTCGGATTTTTTTAATTATTTTCTTCTATTTATTTTTATGTTTGCTTCTTCTTCGTTTGGAATATATGATTCTTGTCCTGATTTCATTTCATTTAGTTTACTCGTTAATTGATTTATTAATTAATTGTTATCCGTTTAGTTGTCGTAGTTTAATCTCTTCAGTTCAATTATTTTTTTGTTTTGAAAAGAAGAAAAAAAAATTAAAAAAAAAAAAAAAAAAAATGAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9512#0 CCTGCCGTGCCAGGGCATCCAGCTGCACAACGTCGACCTCAAGTACGCCGGCCAAGGGAA 60 consensus_9512#2 ------------------------------------------------------------ consensus_9512#1 ------------------------------------------------------------ consensus_9512#0 CACCACCCTCTCCGTCTGCAAGAACGTCGCCGGCAAGTCCAGCAACGTCGCCAAGGAGCT 120 consensus_9512#2 -------------------------------------------GACGA-GACAAGGGGCT 16 consensus_9512#1 --------------------TGGAGGACATCATGGTCACCAANTGCACGAATAAAGGGCA 40 * ** * ** consensus_9512#0 CGCCTGCGTCTGATTTTCATCT---TATTATACTACTCTTCCGTTTCATATTACAAAGTC 177 consensus_9512#2 CGCCTGCGTCTGATTTTNTCCTATATATTATACTACTCTTCCGTTTCATATTACAAAGTC 76 consensus_9512#1 C---CACGAACGGGCTTCCGGATCAAGTCGTACGAGGACTCCAAGTCGCAGCTGAGGGCG 97 * ** * ** * *** * *** ** * * * consensus_9512#0 ATTTGTTTTTTTTTAAAGCCAATTTTTTCAAAGTTTGACCAAAGTTTTTTAAAAAATATA 237 consensus_9512#2 ATTTGTTTTTTTTAAAGCCC--TTTTTTTAAAGTTTGACCAAAGTTTTTTAAAAAATATA 134 consensus_9512#1 ACCAAGTTCCTGTACGACGG--CATCACCATGGACGAACGTGAGCTACCCGATCATCATC 155 * ** * * * * * ** ** * * * ** consensus_9512#0 GTAGTATTTTCAATATGAAAAGAACATATTATCAGAATATATTTCATATTGGATTTAATT 297 consensus_9512#2 GTAGTATTTTCAATATGAAAAGAACATATTATCAGAATATATTTCATATTGGATTTAATT 194 consensus_9512#1 G-ACCAGAAGTACTGCCCCAACAACATCTGCTCCGCGTCCGGCACGT-CCAAGGTCGCCG 213 * * * * * ** ***** * ** * * * * * consensus_9512#0 AGACTAATTTAATATTTTATA-TGTTGCTA-TATTTTTTTTATAAATTTGTTTAAACTAA 355 consensus_9512#2 ATACTAATTTAATATTTTATA-TGTTGCTA-CATTTTTTTTATAAATTTGTT-------- 244 consensus_9512#1 TCACCGACATGGTCTTCAAGAACATCGTCGGCACGTCGGCGACGCCCGAGGC-------- 265 ** * * * ** * * * * * * * * consensus_9512#0 ATAAAAATTGACTAGAAAAAGTCAAACA-ACTTATAATATGAAATGGAGATAGGGGGAGT 414 consensus_9512#2 -------------AGAAAAAGTCAAACA-ACTTATAATATGAAATGGAGATAGGGGGAGT 290 consensus_9512#1 -------------CGTCACGCTCAACTGCGCCAACAACCTGCCGTG---CCAGGGCATCC 309 * * **** * * ** ** ** **** consensus_9512#0 AATTGTCGTCTGATTATATAGTTGTAAGTTAATCATCGTTCCCTCCGCTACATTCCCCTC 474 consensus_9512#2 AATTGT---------------------GTTAATCATCGTTCCCTCCGCCACATTCCCCTC 329 consensus_9512#1 AGCTGCAC----------------AACGTCGACCTCAAGTACGCCGGCCAAGGGAACACC 353 * ** ** * * * * * ** * * * consensus_9512#0 ACTTGTATTCTTCATCTAATTATTTTCCTCTCTCTCCCTCTTCGGATTTTTTTAATT-AT 533 consensus_9512#2 ACTTGTATTCTTCATCTAATTATTTTCCTCTCTCTCCCTCTTCGGATTTTTTTAATT-AT 388 consensus_9512#1 ACCC-TCTCCGTNTGCAANAACGTCGCCGGCAAGTCCAGCAACGTCGCCAAGGAGCTCGC 412 ** * * * * * * * ** *** * ** * * consensus_9512#0 TTTCTTCTATTTAAAAATATGTT-TGCTTCTTCTTCGTTTGGAAT-ATATGATT-CTTGT 590 consensus_9512#2 TTTCTTCTATTTATTTTTATGTT-TGCTTCTTCTTCGTTTGGAAT-ATATGATT-CTTGT 445 consensus_9512#1 CTGCGTCTGATTTTCATCTTATTANACTACTCTTCCGTTTCATATTACAAAGTCATTTGT 472 * * *** ** * ** ** ** * ***** ** * * * **** consensus_9512#0 CCTGATTTCATTTCATTTAGTTTACTCGTTAATTGA--TTTATTAATTAAT-TGTTATCC 647 consensus_9512#2 CCTGATTTCATTTCATTTAGTTTACTCGTTAATTGA--TTTATTAATTAAT-TGTTATCC 502 consensus_9512#1 TTTTTTTTAAAGCCAATTTTTTCAAAGTTTGACCAAAGTTTTTTAAAAAATATAGTAGTA 532 * *** * ** ** ** * ** * * *** **** *** * ** consensus_9512#0 GTTTAGTTGTCGTAGTTTAATCTCTTCAGTTCAATTATTTTTTTGTTTGATTCTTAAAAA 707 consensus_9512#2 GTTTAGTTGTCGTAGTTTAATCTCTTCAGTTCAATTATTTTTTTGTTTTGAAAAGAAGAA 562 consensus_9512#1 TTTTCAATATGAAAAGAACATATTATCAGAATA-----TATTTCATATTGGATTTAATTA 587 *** * * * ** * **** * * *** * * ** * consensus_9512#0 ----------------------------------- consensus_9512#2 AAAAAAATTAAAAAAAAAAAAAAAAAAAATGAAAA 597 consensus_9512#1 GACTAATTTAAAAAAAAAAAAAAAAAAAAAA---- 618 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||