Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 9518 cluster # 9518       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9518#0 length = 561 sequences # 5  
consensus_9518#1 length = 365 sequences # 1  

consensusID : consensus_9518#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 561
fasta sequence
                              [TGCTGGTAAAACTTAACAATGTTTTAGAGCAAGATACCAGTACATAGTACAAATCAACATACAGATTTGTCACAATTTACTTTAGTACAATTTTACTTATTGACAAACACATTCCATTCTCCGTGGTCCATTTGCTCTGATTGCAGAATGCTCCAATATGAAATCCCTGCCGATTCTTCACTTCTGACCATGCACAGTTGGGACGGCAAAATATACTCAGAAACAATATCAAAGCAAGCAAGCAATAAAACATACTCAGAAAATAAACTTTTGAACTCTTATTTTTCTATAGTATCGGATTGGAAAGGCCTCAGACCGTCCTAGTTCATGAGCAATATCAACATAGCTCTGGCAACAACGATGTGTGCCAGTTCTGAAACCATCATGTCATCAAAGGCATCAGATCCAATCCAACAATTCGCATTCAACTCACAAAAGATTAATCTGCACGAACAGCCATAGAATTTAAAAGGAGATATAGGTTCATCAAAACTGTGTCAGATTAAAGTATTCTCAGCACCCTTATGAAGGAATCAGACAGGGATAACTGTATTTTCACTT]

[+] EMBL BI305655             [TGCTGGTAAAACTTAACAATGTTTTAGAGCAAGATACCAGTACATAGTACAAATCAACATACAGATTTGTCACAATTTACTTTAGTACAATTTTACTTATTGACAAACACATTCCATTCTCCGTGGTCCATTTGCTCTGATTGCAGAATGCTCCAATATGAAATCCCTGCCGATTCTTCACTTCTGACCATGCACAGTTGGGACGGCAAAATATACTCAGAAACAATATCAAAGCAAGCAAGCAATAAAACATACTCAGAAAATAAACTTTTGAACTCTTATTTTTCTATAGTATCGGATTGGAAAGGCCTCAGACCGTCCTAGTTCATGAGCAATATCAACATAGCTCTGGCAACAACGATGTGTGCCAGTT                                                                                                                                                                                            ]
[+] EMBL BI306187             [TGCTGGTAAAACTTAACAATGTTTTAGAGCAAGATACCAGTACATAGTACAAATCAACATACAGATTTGTCACAATTTACTTTAGTACAATTTTACTTATTGACAAACACATTCCATTCTCCGTGGTCCATTTGCTCTGATTGCAGAATGCTCCAATATGAAATCCCTGCCGATTCTTCACTTCTGACCATGCACAGTTGGGACGGCAAAATATACTCAGAAACAATATCAAAGCAAGCAAGCAATAAAACATACTCAGAAAATAAACTTTTGAACTCTTATTTTTCTATAGTATCGGATTGGAAAGGCCTCAGACCGTCCTAGTTCATGAGCAATATCAACATAGCTCTGGCAACAACGATGTGTGCCAGTT                                                                                                                                                                                            ]
[+] EMBL BU673627             [TGCTGGTAAAACTTAACAATGTTTTAGAGCAAGATACCAGTACATAGTACAAATCAACATACAGATTTGTCACAATTTACTTTAGTACAATTTTACTTATTGACAAACACATTCCATTCTCCGTGGTCCATTTGCTCTGATTGCAGAATGCTCCAATATGAAATCCCTGCCGATTCTTCACTTCTGACCATGCACAGTTGGGACGGCAAAATATACTCAGAAACAATATCAAAGCAAGCAAGCAATAAAACATACTCAGAAAATAAACTTTTGAACTCTTATTTTTCTATAGTATCGGATTGGAAAGGCCTCAGACCGTCCTAGTTCATGAGCAATATCAACATAGCTCTGGCAACAACGATGT                                                                                                                                                                                                     ]
[-] EMBL AU085785             [                                                                                                                                                                                                                                                                                                ttttTATCGGATTGGAAAGGCCTCAGACCGTCCTAGTTCATGAGCAATATCAACATAGCTCTGGCAACAACGATGTGTGCCAGTTCTGAAACCATCATGTCATCAAAGGCATCAGATCCAATCCAACAATTCGCATTCAACTCACAAAAGATTAATCTGCACGAACAGCCATAGAATTTAAAAGGAGATATAGGTTCATCAAAACTGTGTCAGATTAAAGTATTCTCAGCACCCTTATGAAGGAATCAGACAGGGATAACTGTATTTTCACTT]
[-] EMBL C27839               [                                                                                                                                                                                                                                                                                                                                    ccCATGAGCAATATCAACATAGCTCTGGCAACAACGATGTGTGCCAGTTCTGAAACCATCATGTCATCAAAGGCATCAGATCCAATCCAACAATTCGCATTCAACTCACAAAAGATTAATCTGCACGAACAGCCATAGAATTTAAAAGGAGATATAGGTTCATCAAAACTGTGTCAGATTAAAGTATTCTCAGCACCCTTATGAAGGAATCAGACAGGGATAACTGTATTTTCACT ]


>consensus_9518#0 TGCTGGTAAAACTTAACAATGTTTTAGAGCAAGATACCAGTACATAGTACAAATCAACAT ACAGATTTGTCACAATTTACTTTAGTACAATTTTACTTATTGACAAACACATTCCATTCT CCGTGGTCCATTTGCTCTGATTGCAGAATGCTCCAATATGAAATCCCTGCCGATTCTTCA CTTCTGACCATGCACAGTTGGGACGGCAAAATATACTCAGAAACAATATCAAAGCAAGCA AGCAATAAAACATACTCAGAAAATAAACTTTTGAACTCTTATTTTTCTATAGTATCGGAT TGGAAAGGCCTCAGACCGTCCTAGTTCATGAGCAATATCAACATAGCTCTGGCAACAACG ATGTGTGCCAGTTCTGAAACCATCATGTCATCAAAGGCATCAGATCCAATCCAACAATTC GCATTCAACTCACAAAAGATTAATCTGCACGAACAGCCATAGAATTTAAAAGGAGATATA GGTTCATCAAAACTGTGTCAGATTAAAGTATTCTCAGCACCCTTATGAAGGAATCAGACA GGGATAACTGTATTTTCACTT



consensusID : consensus_9518#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 365
fasta sequence
                              [CAAGATACCAGTACATAGTACAAATCAACATGCAGATTTGCCACTATTTACTTTAGTACAATTTTAGTTATTGACAAACACATTCCATTTTCCGTGGTCCATTTGCTCTGATTACAGAATGTTCCAATATGAAATCCTAGCCGATTATTCATTTATGGCCACGCACAGTTGGCACGGCATAATATACTCAGAAACAATATCGAAGCAAGCAAGCAATATTACATATTCAGAAAAAAAACTTCTGAACTCTTATTTTTCTATAGTATAGGATTGGAAAGGCCTCAGTCCGTCATAGTTCATGATCAATATCCACATAGCTATGGCATCAACTTATGTGTGCCAGTTTATTCAACCATCATGTCAGC]

[-] EMBL CF308919             [CAAGATACCAGTACATAGTACAAATCAACATGCAGATTTGCCACTATTTACTTTAGTACAATTTTAGTTATTGACAAACACATTCCATTTTCCGTGGTCCATTTGCTCTGATTACAGAATGTTCCAATATGAAATCCTAGCCGATTATTCATTTATGGCCACGCACAGTTGGCACGGCATAATATACTCAGAAACAATATCGAAGCAAGCAAGCAATATTACATATTCAGAAAAAAAACTTCTGAACTCTTATTTTTCTATAGTATAGGATTGGAAAGGCCTCAGTCCGTCATAGTTCATGATCAATATCCACATAGCTATGGCATCAACTTATGTGTGCCAGTTTATTCAACCATCATGTCAGC]


>consensus_9518#1 CAAGATACCAGTACATAGTACAAATCAACATGCAGATTTGCCACTATTTACTTTAGTACA ATTTTAGTTATTGACAAACACATTCCATTTTCCGTGGTCCATTTGCTCTGATTACAGAAT GTTCCAATATGAAATCCTAGCCGATTATTCATTTATGGCCACGCACAGTTGGCACGGCAT AATATACTCAGAAACAATATCGAAGCAAGCAAGCAATATTACATATTCAGAAAAAAAACT TCTGAACTCTTATTTTTCTATAGTATAGGATTGGAAAGGCCTCAGTCCGTCATAGTTCAT GATCAATATCCACATAGCTATGGCATCAACTTATGTGTGCCAGTTTATTCAACCATCATG TCAGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9518#0      TGCTGGTAAAACTTAACAATGTTTTAGAGCAAGATACCAGTACATAGTACAAATCAACAT 60
consensus_9518#1      -----------------------------CAAGATACCAGTACATAGTACAAATCAACAT 31
                                                   *******************************

consensus_9518#0      ACAGATTTGTCACAATTTACTTTAGTACAATTTTACTTATTGACAAACACATTCCATTCT 120
consensus_9518#1      GCAGATTTGCCACTATTTACTTTAGTACAATTTTAGTTATTGACAAACACATTCCATTTT 91
                       ******** *** ********************* ********************** *

consensus_9518#0      CCGTGGTCCATTTGCTCTGATTGCAGAATGCTCCAATATGAAATCCCTGCCGATTCTTCA 180
consensus_9518#1      CCGTGGTCCATTTGCTCTGATTACAGAATGTTCCAATATGAAATCCTAGCCGATTATTCA 151
                      ********************** ******* ***************  ******* ****

consensus_9518#0      CTTCTGACCATGCACAGTTGGGACGGCAAAATATACTCAGAAACAATATCAAAGCAAGCA 240
consensus_9518#1      TTTATGGCCACGCACAGTTGGCACGGCATAATATACTCAGAAACAATATCGAAGCAAGCA 211
                       ** ** *** ********** ****** ********************* *********

consensus_9518#0      AGCAATAAAACATACTCAGAAAATAAACTTTTGAACTCTTATTTTTCTATAGTATCGGAT 300
consensus_9518#1      AGCAATATTACATATTCAGAAAAAAAACTTCTGAACTCTTATTTTTCTATAGTATAGGAT 271
                      *******  ***** ******** ****** ************************ ****

consensus_9518#0      TGGAAAGGCCTCAGACCGTCCTAGTTCATGAGCAATATCAACATAGCTCTGGCAACAACG 360
consensus_9518#1      TGGAAAGGCCTCAGTCCGTCATAGTTCATGATCAATATCCACATAGCTATGGCATCAACT 331
                      ************** ***** ********** ******* ******** ***** **** 

consensus_9518#0      -ATGTGTGCCAGTTC-TGAAACCATCATGTCATCAAAGGCATCAGATCCAATCCAACAAT 418
consensus_9518#1      TATGTGTGCCAGTTTATTCAACCATCATGTCAGC-------------------------- 365
                       *************  *  ************* *                          

consensus_9518#0      TCGCATTCAACTCACAAAAGATTAATCTGCACGAACAGCCATAGAATTTAAAAGGAGATA 478
consensus_9518#1      ------------------------------------------------------------
                                                                                  

consensus_9518#0      TAGGTTCATCAAAACTGTGTCAGATTAAAGTATTCTCAGCACCCTTATGAAGGAATCAGA 538
consensus_9518#1      ------------------------------------------------------------
                                                                                  

consensus_9518#0      CAGGGATAACTGTATTTTCACTT 561
consensus_9518#1      -----------------------
                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)