cluster # 9518

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Oryza sativa
cluster # 9518 cluster # 9518 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9518#0 length = 561 sequences # 5

consensus_9518#1 length = 365 sequences # 1

consensusID : consensus_9518#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 561
fasta sequence

                              [TGCTGGTAAAACTTAACAATGTTTTAGAGCAAGATACCAGTACATAGTACAAATCAACATACAGATTTGTCACAATTTACTTTAGTACAATTTTACTTATTGACAAACACATTCCATTCTCCGTGGTCCATTTGCTCTGATTGCAGAATGCTCCAATATGAAATCCCTGCCGATTCTTCACTTCTGACCATGCACAGTTGGGACGGCAAAATATACTCAGAAACAATATCAAAGCAAGCAAGCAATAAAACATACTCAGAAAATAAACTTTTGAACTCTTATTTTTCTATAGTATCGGATTGGAAAGGCCTCAGACCGTCCTAGTTCATGAGCAATATCAACATAGCTCTGGCAACAACGATGTGTGCCAGTTCTGAAACCATCATGTCATCAAAGGCATCAGATCCAATCCAACAATTCGCATTCAACTCACAAAAGATTAATCTGCACGAACAGCCATAGAATTTAAAAGGAGATATAGGTTCATCAAAACTGTGTCAGATTAAAGTATTCTCAGCACCCTTATGAAGGAATCAGACAGGGATAACTGTATTTTCACTT]

[+] EMBL BI305655             [TGCTGGTAAAACTTAACAATGTTTTAGAGCAAGATACCAGTACATAGTACAAATCAACATACAGATTTGTCACAATTTACTTTAGTACAATTTTACTTATTGACAAACACATTCCATTCTCCGTGGTCCATTTGCTCTGATTGCAGAATGCTCCAATATGAAATCCCTGCCGATTCTTCACTTCTGACCATGCACAGTTGGGACGGCAAAATATACTCAGAAACAATATCAAAGCAAGCAAGCAATAAAACATACTCAGAAAATAAACTTTTGAACTCTTATTTTTCTATAGTATCGGATTGGAAAGGCCTCAGACCGTCCTAGTTCATGAGCAATATCAACATAGCTCTGGCAACAACGATGTGTGCCAGTT                                                                                                                                                                                            ]
[+] EMBL BI306187             [TGCTGGTAAAACTTAACAATGTTTTAGAGCAAGATACCAGTACATAGTACAAATCAACATACAGATTTGTCACAATTTACTTTAGTACAATTTTACTTATTGACAAACACATTCCATTCTCCGTGGTCCATTTGCTCTGATTGCAGAATGCTCCAATATGAAATCCCTGCCGATTCTTCACTTCTGACCATGCACAGTTGGGACGGCAAAATATACTCAGAAACAATATCAAAGCAAGCAAGCAATAAAACATACTCAGAAAATAAACTTTTGAACTCTTATTTTTCTATAGTATCGGATTGGAAAGGCCTCAGACCGTCCTAGTTCATGAGCAATATCAACATAGCTCTGGCAACAACGATGTGTGCCAGTT                                                                                                                                                                                            ]
[+] EMBL BU673627             [TGCTGGTAAAACTTAACAATGTTTTAGAGCAAGATACCAGTACATAGTACAAATCAACATACAGATTTGTCACAATTTACTTTAGTACAATTTTACTTATTGACAAACACATTCCATTCTCCGTGGTCCATTTGCTCTGATTGCAGAATGCTCCAATATGAAATCCCTGCCGATTCTTCACTTCTGACCATGCACAGTTGGGACGGCAAAATATACTCAGAAACAATATCAAAGCAAGCAAGCAATAAAACATACTCAGAAAATAAACTTTTGAACTCTTATTTTTCTATAGTATCGGATTGGAAAGGCCTCAGACCGTCCTAGTTCATGAGCAATATCAACATAGCTCTGGCAACAACGATGT                                                                                                                                                                                                     ]
[-] EMBL AU085785             [                                                                                                                                                                                                                                                                                                ttttTATCGGATTGGAAAGGCCTCAGACCGTCCTAGTTCATGAGCAATATCAACATAGCTCTGGCAACAACGATGTGTGCCAGTTCTGAAACCATCATGTCATCAAAGGCATCAGATCCAATCCAACAATTCGCATTCAACTCACAAAAGATTAATCTGCACGAACAGCCATAGAATTTAAAAGGAGATATAGGTTCATCAAAACTGTGTCAGATTAAAGTATTCTCAGCACCCTTATGAAGGAATCAGACAGGGATAACTGTATTTTCACTT]
[-] EMBL C27839               [                                                                                                                                                                                                                                                                                                                                    ccCATGAGCAATATCAACATAGCTCTGGCAACAACGATGTGTGCCAGTTCTGAAACCATCATGTCATCAAAGGCATCAGATCCAATCCAACAATTCGCATTCAACTCACAAAAGATTAATCTGCACGAACAGCCATAGAATTTAAAAGGAGATATAGGTTCATCAAAACTGTGTCAGATTAAAGTATTCTCAGCACCCTTATGAAGGAATCAGACAGGGATAACTGTATTTTCACT ]




>consensus_9518#0
TGCTGGTAAAACTTAACAATGTTTTAGAGCAAGATACCAGTACATAGTACAAATCAACAT
ACAGATTTGTCACAATTTACTTTAGTACAATTTTACTTATTGACAAACACATTCCATTCT
CCGTGGTCCATTTGCTCTGATTGCAGAATGCTCCAATATGAAATCCCTGCCGATTCTTCA
CTTCTGACCATGCACAGTTGGGACGGCAAAATATACTCAGAAACAATATCAAAGCAAGCA
AGCAATAAAACATACTCAGAAAATAAACTTTTGAACTCTTATTTTTCTATAGTATCGGAT
TGGAAAGGCCTCAGACCGTCCTAGTTCATGAGCAATATCAACATAGCTCTGGCAACAACG
ATGTGTGCCAGTTCTGAAACCATCATGTCATCAAAGGCATCAGATCCAATCCAACAATTC
GCATTCAACTCACAAAAGATTAATCTGCACGAACAGCCATAGAATTTAAAAGGAGATATA
GGTTCATCAAAACTGTGTCAGATTAAAGTATTCTCAGCACCCTTATGAAGGAATCAGACA
GGGATAACTGTATTTTCACTT

consensusID : consensus_9518#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 365
fasta sequence

                              [CAAGATACCAGTACATAGTACAAATCAACATGCAGATTTGCCACTATTTACTTTAGTACAATTTTAGTTATTGACAAACACATTCCATTTTCCGTGGTCCATTTGCTCTGATTACAGAATGTTCCAATATGAAATCCTAGCCGATTATTCATTTATGGCCACGCACAGTTGGCACGGCATAATATACTCAGAAACAATATCGAAGCAAGCAAGCAATATTACATATTCAGAAAAAAAACTTCTGAACTCTTATTTTTCTATAGTATAGGATTGGAAAGGCCTCAGTCCGTCATAGTTCATGATCAATATCCACATAGCTATGGCATCAACTTATGTGTGCCAGTTTATTCAACCATCATGTCAGC]

[-] EMBL CF308919             [CAAGATACCAGTACATAGTACAAATCAACATGCAGATTTGCCACTATTTACTTTAGTACAATTTTAGTTATTGACAAACACATTCCATTTTCCGTGGTCCATTTGCTCTGATTACAGAATGTTCCAATATGAAATCCTAGCCGATTATTCATTTATGGCCACGCACAGTTGGCACGGCATAATATACTCAGAAACAATATCGAAGCAAGCAAGCAATATTACATATTCAGAAAAAAAACTTCTGAACTCTTATTTTTCTATAGTATAGGATTGGAAAGGCCTCAGTCCGTCATAGTTCATGATCAATATCCACATAGCTATGGCATCAACTTATGTGTGCCAGTTTATTCAACCATCATGTCAGC]




>consensus_9518#1
CAAGATACCAGTACATAGTACAAATCAACATGCAGATTTGCCACTATTTACTTTAGTACA
ATTTTAGTTATTGACAAACACATTCCATTTTCCGTGGTCCATTTGCTCTGATTACAGAAT
GTTCCAATATGAAATCCTAGCCGATTATTCATTTATGGCCACGCACAGTTGGCACGGCAT
AATATACTCAGAAACAATATCGAAGCAAGCAAGCAATATTACATATTCAGAAAAAAAACT
TCTGAACTCTTATTTTTCTATAGTATAGGATTGGAAAGGCCTCAGTCCGTCATAGTTCAT
GATCAATATCCACATAGCTATGGCATCAACTTATGTGTGCCAGTTTATTCAACCATCATG
TCAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9518#0      TGCTGGTAAAACTTAACAATGTTTTAGAGCAAGATACCAGTACATAGTACAAATCAACAT 60
consensus_9518#1      -----------------------------CAAGATACCAGTACATAGTACAAATCAACAT 31
                                                   *******************************

consensus_9518#0      ACAGATTTGTCACAATTTACTTTAGTACAATTTTACTTATTGACAAACACATTCCATTCT 120
consensus_9518#1      GCAGATTTGCCACTATTTACTTTAGTACAATTTTAGTTATTGACAAACACATTCCATTTT 91
                       ******** *** ********************* ********************** *

consensus_9518#0      CCGTGGTCCATTTGCTCTGATTGCAGAATGCTCCAATATGAAATCCCTGCCGATTCTTCA 180
consensus_9518#1      CCGTGGTCCATTTGCTCTGATTACAGAATGTTCCAATATGAAATCCTAGCCGATTATTCA 151
                      ********************** ******* ***************  ******* ****

consensus_9518#0      CTTCTGACCATGCACAGTTGGGACGGCAAAATATACTCAGAAACAATATCAAAGCAAGCA 240
consensus_9518#1      TTTATGGCCACGCACAGTTGGCACGGCATAATATACTCAGAAACAATATCGAAGCAAGCA 211
                       ** ** *** ********** ****** ********************* *********

consensus_9518#0      AGCAATAAAACATACTCAGAAAATAAACTTTTGAACTCTTATTTTTCTATAGTATCGGAT 300
consensus_9518#1      AGCAATATTACATATTCAGAAAAAAAACTTCTGAACTCTTATTTTTCTATAGTATAGGAT 271
                      *******  ***** ******** ****** ************************ ****

consensus_9518#0      TGGAAAGGCCTCAGACCGTCCTAGTTCATGAGCAATATCAACATAGCTCTGGCAACAACG 360
consensus_9518#1      TGGAAAGGCCTCAGTCCGTCATAGTTCATGATCAATATCCACATAGCTATGGCATCAACT 331
                      ************** ***** ********** ******* ******** ***** **** 

consensus_9518#0      -ATGTGTGCCAGTTC-TGAAACCATCATGTCATCAAAGGCATCAGATCCAATCCAACAAT 418
consensus_9518#1      TATGTGTGCCAGTTTATTCAACCATCATGTCAGC-------------------------- 365
                       *************  *  ************* *                          

consensus_9518#0      TCGCATTCAACTCACAAAAGATTAATCTGCACGAACAGCCATAGAATTTAAAAGGAGATA 478
consensus_9518#1      ------------------------------------------------------------
                                                                                  

consensus_9518#0      TAGGTTCATCAAAACTGTGTCAGATTAAAGTATTCTCAGCACCCTTATGAAGGAATCAGA 538
consensus_9518#1      ------------------------------------------------------------
                                                                                  

consensus_9518#0      CAGGGATAACTGTATTTTCACTT 561
consensus_9518#1      -----------------------