cluster # 9523

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Oryza sativa
cluster # 9523 cluster # 9523 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9523#0 length = 719 sequences # 5

consensus_9523#1 length = 483 sequences # 1

consensusID : consensus_9523#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 719
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTCATAACAATCAATAAATCCTTGTCATTAACCGGACGACAC-GGTAATATCTCACACTTGATGACC-GACTCCTGCAAGCTAAACAAACTTAAAAATTTTAAAAAAAAACCTCACAAAAACAAAACCACTCAAATCAATTAATTCGATCGTCTACCGCTGTATATATATGCTTCTTGTGTACTCTGCTGTATCGAATTATCATTTGGTTCATCGATCCATGGAGAGAAATGTTTTCTTGNGTGTTCGATCGCTAGCTTAGCTATGGCGCCGGGCAGCCCATCTCGTCGCGTGCCTGGATGAAGACGATGGCGGCGGCGT-AGTGCGCGAGCGCGCCGGCGATGACGAGCGCGTGGAAGATCTGGTGGCTGTGGCCGCACAGGTCGAACATGCCGGGGCGCCACCGCTCCGGGACGCGGGTGAGGTAGAACGCGGTGCCGGCGAGGTAGGACGCCGCCATGGCGCCCTCGTACGCCAGCGTCACGTTCCGGCGGGGCTCGTGCCAGTTGACGGCGACGGCGTGGGCGGCGGGGACGACGCCGGAGAGGCCCATGGCGACGAACAGCAGCGCGCGGTGGGCGCGGTACCTCGCCGCGCTCAGCCTGGGCGACATGAGCGCGTACACGGTGGCCACCCCGGCGGCGGTGATCGCCGACAGGTACACCACCTGCCACCGCGGCTCGCACTGGAAGATGTATTAGATGG]

[-] EMBL AU086005             [TTTTTTTTTTTTTTTTTTTTTTAACAATCAATAAATCCTTGTCATTAACCGGACGACAC GGTAATATCTCACACTTGATGACC GACTCCTGCAAGCTAAACAAACTTAAAAATTTTAAAAAAAAACCTCACAAAAACAAAACCACTCAAATCAATTAATTCGATCGTCTACCGCTGTATATATATGCTTCTTGTGTACTCTGCTGTATCGAATTATCATTTGGTTCATCGATCCATGGAGAGAAATGTTTTCTTGNGTGTTCGATCGCTAGCTTAGCTATGGCGCCGGGCAGCCCATCTCGTCGCGTGCCTGGATGAAGACGATGGCGGCGGCGT AGTGCGCGAGCGCNCCGGCGATGACGAGCGCGTGGAAGATCTGGTGGCTGTGGCCGCACAGGTCGAACA                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL AU197945             [     TTTTTTTTTTTTTTCANAACAATCAATAAATCCTTGTCATTAACCGGACGACAC GGTAATATCTNACACTTGATGACCGGACTCCTGCAAGCTAAACAAACTTAAAAATTTTAAAAAAAAACCTCACAAAAACAAAACCACTCAAATCAATTAATTCGATCGTCTACCGNTGNATATATATGCTTCTTGNGTACTCTGCTGNATCGAATTATCATTNGGTTCATCGATCCATGGANAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL AU174053             [        TTTTTTTTTTTCATAACAATCAATAAATCCTTGTCATTAACCGGACGACACGGGTAATATCTCACACTTGATGACC GACTCCTGCAAGCTAAACAAACTTAAAAATTTTAAAAAAAAACCTCACAAAAACAAAACCACTCAAATCAATTAATTCGATCGTCTACCGCTGTATATATATGCTTCTTGGGTACTCTGCTGTATCGAATTATCATTNGGTTCATCGATCCATGGANAGAAATGTTTTCTTGNGTGTTCNATCGCTAGCTTAGCTATGGCGCCGGGCAGCCCATCTCGTCGCGTGCCTGGATGAAAACNATGGCGGCGGCGT ANTGCGCGAGCGCGCCGGCGATGACAAGCGCGTGG                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CB657885             [                      AACAATCAATAAATCCTTGTCATTAACCGGACCATTC GGTAATATCTCACACTTGATGACC GACTCCTGCAAGCTAAACAAACTTAAAAATTTTAAAAAAAAACCTCACAAAAACAAAACCACTCAAATCAATTAATTCGATCGTCTACCGCTGTATATATATGCTTCTTGTGTACTCTGCTGTATCGAATTATCATTTGGTTCATCGATCCATGGAGAGAAATGTTTTCTTGTGTGTTCGATCGCTAGCTTAGCTATGGCGCCGGGCAGCCCATCTCGTCGCGTGCCTGGATGAAGACAATGGCGGCGGCGT AGTGCGCGAGCGCGCCGGCGATGACGAGCGCGTGGAAAATCTGGTGGCTGTGGCCGCACAGGTCGAACATGCCGGGGCGCCACCGCTCCGGGACGCGGGTGAGGTAGAACGCGGTGCCGGCGAGGTAGGACGCCGCCATGGCGCCCTCGTACGCCAGCGTCACGTTCCGGCGGGGCTCGTGCCAGTTGACGGCGACGGCGTGGGCGGCGGGGACGACGCCGGAGAGGCCCATGGCGACGAACAGCAGCGCGCGGTGGGCGCGGTACCTCGCCGCGCTCAGCCTGGGCGACATGAGCGCGTACACGGTGGCCACCCCGGCGGCGGTGATCGCCGACAGGTACACCACCTGCCACCGCGGCTCGCACTGGAAGATGTATTAGATGG]
[-] EMBL OSS10977A            [                                             TAACCGGACGACAC GGTAATATCTCACACTTGATGACC GACNCCTGCAAGCTAAACAAACTTAAAAATTTTAAAAAAAAACCTCACAAAAACAAAACCACTCAAATCAATTAATTCGATCGTCTACCGCTGTATATATATGCTTCTTGTGTACTCTGCTGTATCGAATTATCATTTGGTTCATCGATCCATGGAGAGAAATGTTTTCTTGTGTGTTCGATCGCTAGCTTAGCTATGGCGCCGGGCAGCCCATCTCGTCGCGTGCCTGGATGAAGACGATGGCGGCGGCGTAAGT C CGAGCGCGCCGGCGATGACGAGCGCGTGGAAGATCTGGTGGCTGTGGCCGCACAGGTCGAACA                                                                                                                                                                                                                                                                                                                           ]




>consensus_9523#0
TTTTTTTTTTTTTTTTTTTCATAACAATCAATAAATCCTTGTCATTAACCGGACGACACG
GTAATATCTCACACTTGATGACCGACTCCTGCAAGCTAAACAAACTTAAAAATTTTAAAA
AAAAACCTCACAAAAACAAAACCACTCAAATCAATTAATTCGATCGTCTACCGCTGTATA
TATATGCTTCTTGTGTACTCTGCTGTATCGAATTATCATTTGGTTCATCGATCCATGGAG
AGAAATGTTTTCTTGNGTGTTCGATCGCTAGCTTAGCTATGGCGCCGGGCAGCCCATCTC
GTCGCGTGCCTGGATGAAGACGATGGCGGCGGCGTAGTGCGCGAGCGCGCCGGCGATGAC
GAGCGCGTGGAAGATCTGGTGGCTGTGGCCGCACAGGTCGAACATGCCGGGGCGCCACCG
CTCCGGGACGCGGGTGAGGTAGAACGCGGTGCCGGCGAGGTAGGACGCCGCCATGGCGCC
CTCGTACGCCAGCGTCACGTTCCGGCGGGGCTCGTGCCAGTTGACGGCGACGGCGTGGGC
GGCGGGGACGACGCCGGAGAGGCCCATGGCGACGAACAGCAGCGCGCGGTGGGCGCGGTA
CCTCGCCGCGCTCAGCCTGGGCGACATGAGCGCGTACACGGTGGCCACCCCGGCGGCGGT
GATCGCCGACAGGTACACCACCTGCCACCGCGGCTCGCACTGGAAGATGTATTAGATGG

consensusID : consensus_9523#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 483
fasta sequence

                              [TTACAACGAACGAATAAGCAACAGTTGCTTCTTGGATGTACAAGTTTCCACATCATAACAATCAATAAATCCTTGTCATTAACCGGACGACACGGGAATATCTCACACTTGATGACCGACTCCTGCAAGCTAAACAAACTTAAAAATTTTAAAAAAAAACCTCCCAAAAACAAAACCACTCAAATCAATTAATTCGATCGTCTACCGCTGGATATATATGCTTCTTGGGGACTCTGCTGGATCGAATTATCATTTGGTTCATCCATCCATGGAGAGAAATGTTTTCTTGTGGGTTCCATCGCTAACTTAACTATGGGGCCGGGCAGCCCATCTCGTCCCGTGCCTGGATGAAAACCATGGCGGCGGCGTAATGCGCCAACGCCCCCGCTATGACGAGCGCGTGGAAAATCTGGTGGCTGTGGCCGCACAGGTCTAAAATGCCGGGGCGCCACCGCTCCGGGACGCGGGTGAGGTAAAACCCCG]

[+] EMBL CB643164             [TTACAACGAACGAATAAGCAACAGTTGCTTCTTGGATGTACAAGTTTCCACATCATAACAATCAATAAATCCTTGTCATTAACCGGACGACACGGGAATATCTCACACTTGATGACCGACTCCTGCAAGCTAAACAAACTTAAAAATTTTAAAAAAAAACCTCCCAAAAACAAAACCACTCAAATCAATTAATTCGATCGTCTACCGCTGGATATATATGCTTCTTGGGGACTCTGCTGGATCGAATTATCATTTGGTTCATCCATCCATGGAGAGAAATGTTTTCTTGTGGGTTCCATCGCTAACTTAACTATGGGGCCGGGCAGCCCATCTCGTCCCGTGCCTGGATGAAAACCATGGCGGCGGCGTAATGCGCCAACGCCCCCGCTATGACGAGCGCGTGGAAAATCTGGTGGCTGTGGCCGCACAGGTCTAAAATGCCGGGGCGCCACCGCTCCGGGACGCGGGTGAGGTAAAACCCCG]




>consensus_9523#1
TTACAACGAACGAATAAGCAACAGTTGCTTCTTGGATGTACAAGTTTCCACATCATAACA
ATCAATAAATCCTTGTCATTAACCGGACGACACGGGAATATCTCACACTTGATGACCGAC
TCCTGCAAGCTAAACAAACTTAAAAATTTTAAAAAAAAACCTCCCAAAAACAAAACCACT
CAAATCAATTAATTCGATCGTCTACCGCTGGATATATATGCTTCTTGGGGACTCTGCTGG
ATCGAATTATCATTTGGTTCATCCATCCATGGAGAGAAATGTTTTCTTGTGGGTTCCATC
GCTAACTTAACTATGGGGCCGGGCAGCCCATCTCGTCCCGTGCCTGGATGAAAACCATGG
CGGCGGCGTAATGCGCCAACGCCCCCGCTATGACGAGCGCGTGGAAAATCTGGTGGCTGT
GGCCGCACAGGTCTAAAATGCCGGGGCGCCACCGCTCCGGGACGCGGGTGAGGTAAAACC
CCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9523#0      ----------------------------------TTTTTTTTTTTTTTTTTTTCATAACA 26
consensus_9523#1      TTACAACGAACGAATAAGCAACAGTTGCTTCTTGGATGTACAAGTTTCCACATCATAACA 60
                                                          * *     ***     ********

consensus_9523#0      ATCAATAAATCCTTGTCATTAACCGGACGACACGGTAATATCTCACACTTGATGACCGAC 86
consensus_9523#1      ATCAATAAATCCTTGTCATTAACCGGACGACACGGGAATATCTCACACTTGATGACCGAC 120
                      *********************************** ************************

consensus_9523#0      TCCTGCAAGCTAAACAAACTTAAAAATTTTAAAAAAAAACCTCACAAAAACAAAACCACT 146
consensus_9523#1      TCCTGCAAGCTAAACAAACTTAAAAATTTTAAAAAAAAACCTCCCAAAAACAAAACCACT 180
                      ******************************************* ****************

consensus_9523#0      CAAATCAATTAATTCGATCGTCTACCGCTGTATATATATGCTTCTTGTGTACTCTGCTGT 206
consensus_9523#1      CAAATCAATTAATTCGATCGTCTACCGCTGGATATATATGCTTCTTGGGGACTCTGCTGG 240
                      ****************************** **************** * ********* 

consensus_9523#0      ATCGAATTATCATTTGGTTCATCGATCCATGGAGAGAAATGTTTTCTTGNGTGTTCGATC 266
consensus_9523#1      ATCGAATTATCATTTGGTTCATCCATCCATGGAGAGAAATGTTTTCTTGTGGGTTCCATC 300
                      *********************** ************************* * **** ***

consensus_9523#0      GCTAGCTTAGCTATGGCGCCGGGCAGCCCATCTCGTCGCGTGCCTGGATGAAGACGATGG 326
consensus_9523#1      GCTAACTTAACTATGGGGCCGGGCAGCCCATCTCGTCCCGTGCCTGGATGAAAACCATGG 360
                      **** **** ****** ******************** ************** ** ****

consensus_9523#0      CGGCGGCGTAGTGCGCGAGCGCGCCGGCGATGACGAGCGCGTGGAAGATCTGGTGGCTGT 386
consensus_9523#1      CGGCGGCGTAATGCGCCAACGCCCCCGCTATGACGAGCGCGTGGAAAATCTGGTGGCTGT 420
                      ********** ***** * *** ** ** ***************** *************

consensus_9523#0      GGCCGCACAGGTCGAACATGCCGGGGCGCCACCGCTCCGGGACGCGGGTGAGGTAGAACG 446
consensus_9523#1      GGCCGCACAGGTCTAAAATGCCGGGGCGCCACCGCTCCGGGACGCGGGTGAGGTAAAACC 480
                      ************* ** ************************************** *** 

consensus_9523#0      CGGTGCCGGCGAGGTAGGACGCCGCCATGGCGCCCTCGTACGCCAGCGTCACGTTCCGGC 506
consensus_9523#1      CCG--------------------------------------------------------- 483
                      * *                                                         

consensus_9523#0      GGGGCTCGTGCCAGTTGACGGCGACGGCGTGGGCGGCGGGGACGACGCCGGAGAGGCCCA 566
consensus_9523#1      ------------------------------------------------------------
                                                                                  

consensus_9523#0      TGGCGACGAACAGCAGCGCGCGGTGGGCGCGGTACCTCGCCGCGCTCAGCCTGGGCGACA 626
consensus_9523#1      ------------------------------------------------------------
                                                                                  

consensus_9523#0      TGAGCGCGTACACGGTGGCCACCCCGGCGGCGGTGATCGCCGACAGGTACACCACCTGCC 686
consensus_9523#1      ------------------------------------------------------------
                                                                                  

consensus_9523#0      ACCGCGGCTCGCACTGGAAGATGTATTAGATGG 719
consensus_9523#1      ---------------------------------