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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9526#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2041 fasta sequence
[GGGGAGGGAGAGAGGTTTTGCCACCGTTGTTTTGGAGGGAAGGAAAATCCTAAGAAGGGGAAAGAGTTTAGCTTGGCAGGTGGTTCTCAGGCTCAATGGCTTTGAGCAAGAGAATGCTATTCATCTTCCAGGCCATGGTTTGCCTCTGCTCCTTCAGTTTATCCCAAGGCAACCAGCAATTCAGCTTAAGGAATCTCCCTACCCTCCAGAAGGCGAGCAGCTTCCCAGCGATGCGCCACGAGACATACGACTACATTGTCGTCGGCGGGGGCACCGCCGGTTGCCCCCTGGCGGCGACATTGTCGCTCAAGTACAAGGTGCTCCTGCTGGAGAGGGGAGGGTCTCCGTATGGCAACCGCAACGTCTCCTACATGGAGAACTTCCACATTGGCCTGAGCAATATGGCGCCGGACTCGGCGTCTCAGGCCTTCATCTCCACTGACGGCGTCATCAATGCCCGAGCGAGGGTGTTGGGAGGTGGCACCTGCATCAATGCCGGCTTCTACAGCCGGGCCAGCTCAAACTTCATCCAGGAGGTAGGCTGGGATGAAGACCTGGTGAATGAGTCCTTCCCTTGGGTGGAGGACAAGATCGTCCAGTGGCCTAAGATCGCACCTTGGCAGGCTGCACTAAGGGATGGGCTACTCCAAGCAGGTGTATCTCCTTTCAATGGCTACACATATGACCATGTTTCTGGGACCAAAGTTGGTGGCACCATCTTTGATGAGACTGGCTACCGCCACACAGCAGCCGACTTACTTGCAGCTGGAGACCCTAACAACCTAAGGGTGCTGCTTCATGCTAGTGTGAACAGGATAGTCTTTAACTCGCAGAGAGGGCAACTGAAGCCAAGAGCAACCGGAGTTCAGTTCACCGATGAGAATGGAGGACTCCACCAGGCATTCCTCAACAGCAACTGTGATAGTGAAATCATTGTCTCTGCTGGCGCAATTGGCAGCCCCCAGCTGCTATTGCTCAGTGGGATTGGACCCAAGAATGACCTTAGGAGCCATAAAATTCCTGTAGTTCTCCATAACAAGTATGTGGGTAAAGGGATGGCTGATAACCCCATGAACTCCATATTCATACCGACGAAAAGCCCCCCTCGCCAGTCCCTGATTGAGACTGTTGGAATAACTGAAGCTGGTGTGTTCATTGAGGCCAGTAGTGGTTTTGGCCAGTCACCAGAAAGCATCCATTGCCACCATGGAATCATGTCCGCTGAGATTGGACAGCTGTCCACAATTCCTCCGAAGGAAAGAAGCCTGGAAAAAGCACAGAAGTATGCAAATACCAAACTTAATCTACCCAAAGAGATATTCCATGGTGGTTTTATCCTCGAGAAGATTGATGGTCCACTGTCTACGGGACATCTTGCCCTGATAGACACTGATGTCAAGAAGAACCCTGCGGTTACCTTCAACTACTTCAGTCATCCACAGGATCTCACTCGTTGCGTCTATGGTATCAAGACCATTGAACGAATACTGAAGACAAACCGTTTCTCTGAACTGTCTGCCAACACTGATGGACATTCAATGGAAAGAGTGCTCAATATGAGTGTGCAGGCTAATGTGAACTTGATACCCAAGCATACAAATGACACAGAATCCCTAGAGCAATTTTGCAGGGATACAGTAATAACCATCTGGCACTACCATGGTGGATG-CCATGTA-GGGAAGGTGGTTGATC-AGCAACACCGTGTGC-TTGGAGTTTCAGGCGTCCGTGTA-GTCGATGGCTCAACATTTTCTAGATCACCAGGGACGAACCCTCAAGCCACGGTCATGATGATGGGCAGATATTTTGGAGTGATGATCCTAAGGGGAAGACTAGGTCGAGCAGCTGGAGTGTAATCGATTCCTGGACACCAGCCTTTTGTTATGTGTGACCTAGAGAAGAAAAATTACTAATTATTGCTGGGATCTAGTGTGATTCACCGAAGAAAGA-CAAGCTAGGAGTTTCATCTGTACCCAGTAATCATTTGTGTCATGTGATATTGCAGATCAAATGGTTTATTGAAAAAAACCCCCCAAAAAAAAAA]
[+] EMBL AK072899 [GGGGAGGGAGAGAGGTTTTGCCACCGTTGTTTTGGAGGGAAGGAAAATCCTAAGAAGGGGAAAGAGTTTAGCTTGGCAGGTGGTTCTCAGGCTCAATGGCTTTGAGCAAGAGAATGCTATTCATCTTCCAGGCCATGGTTTGCCTCTGCTCCTTCAGTTTATCCCAAGGCAACCAGCAATTCAGCTTAAGGAATCTCCCTACCCTCCAGAAGGCGAGCAGCTTCCCAGCGATGCGCCACGAGACATACGACTACATTGTCGTCGGCGGGGGCACCGCCGGTTGCCCCCTGGCGGCGACATTGTCGCTCAAGTACAAGGTGCTCCTGCTGGAGAGGGGAGGGTCTCCGTATGGCAACCGCAACGTCTCCTACATGGAGAACTTCCACATTGGCCTGAGCAATATGGCGCCGGACTCGGCGTCTCAGGCCTTCATCTCCACTGACGGCGTCATCAATGCCCGAGCGAGGGTGTTGGGAGGTGGCACCTGCATCAATGCCGGCTTCTACAGCCGGGCCAGCTCAAACTTCATCCAGGAGGTAGGCTGGGATGAAGACCTGGTGAATGAGTCCTTCCCTTGGGTGGAGGACAAGATCGTCCAGTGGCCTAAGATCGCACCTTGGCAGGCTGCACTAAGGGATGGGCTACTCCAAGCAGGTGTATCTCCTTTCAATGGCTACACATATGACCATGTTTCTGGGACCAAAGTTGGTGGCACCATCTTTGATGAGACTGGCTACCGCCACACAGCAGCCGACTTACTTGCAGCTGGAGACCCTAACAACCTAAGGGTGCTGCTTCATGCTAGTGTGAACAGGATAGTCTTTAACTCGCAGAGAGGGCAACTGAAGCCAAGAGCAACCGGAGTTCAGTTCACCGATGAGAATGGAGGACTCCACCAGGCATTCCTCAACAGCAACTGTGATAGTGAAATCATTGTCTCTGCTGGCGCAATTGGCAGCCCCCAGCTGCTATTGCTCAGTGGGATTGGACCCAAGAATGACCTTAGGAGCCATAAAATTCCTGTAGTTCTCCATAACAAGTATGTGGGTAAAGGGATGGCTGATAACCCCATGAACTCCATATTCATACCGACGAAAAGCCCCCCTCGCCAGTCCCTGATTGAGACTGTTGGAATAACTGAAGCTGGTGTGTTCATTGAGGCCAGTAGTGGTTTTGGCCAGTCACCAGAAAGCATCCATTGCCACCATGGAATCATGTCCGCTGAGATTGGACAGCTGTCCACAATTCCTCCGAAGGAAAGAAGCCTGGAAAAAGCACAGAAGTATGCAAATACCAAACTTAATCTACCCAAAGAGATATTCCATGGTGGTTTTATCCTCGAGAAGATTGATGGTCCACTGTCTACGGGACATCTTGCCCTGATAGACACTGATGTCAAGAAGAACCCTGCGGTTACCTTCAACTACTTCAGTCATCCACAGGATCTCACTCGTTGCGTCTATGGTATCAAGACCATTGAACGAATACTGAAGACAAACCGTTTCTCTGAACTGTCTGCCAACACTGATGGACATTCAATGGAAAGAGTGCTCAATATGAGTGTGCAGGCTAATGTGAACTTGATACCCAAGCATACAAATGACACAGAATCCCTAGAGCAATTTTGCAGGGATACAGTAATAACCATCTGGCACTACCATGGTGGATG CCATGTA GGGAAGGTGGTTGATC AGCAACACCGTGTGC TTGGAGTTTCAGGCGTCCGTGTA GTCGATGGCTCAACATTTTCTAGATCACCAGGGACGAACCCTCAAGCCACGGTCATGATGATGGGCAGATATTTTGGAGTGATGATCCTAAGGGGAAGACTAGGTCGAGCAGCTGGAGTGTAATCGATTCCTGGACACCAGCCTTTTGTTATGTGTGACCTAGAGAAGAAAAATTACTAATTATTGCTGGGATCTAGTGTGATTCACCGAAGAAAGA CAAGCTAGGAGTTTCATCTGTACCCAGTAATCATTTGTGTCATGTGATATTGCAGATCAAA ]
[+] EMBL OSS13202A [ ATGGTCCACTGTCTACGGGACATCTTGCCCTGATAGACACTGATGTCAAGAAGAACCCTGCGGTTACCTTCAACTACTTCAGTCATCCACAGGATCTCACTCGTTGCGTCTATGGTATCAAGACCATTGAACGAATACTGAAGACAAACCGTTTCTCTGAACTGTCTGCCAACACTGATGGACATTCAATGGAAAGAGTGCTCAATATGAGTGTGCAGGCTAATGTGAACTTGATACCCAAGCATACAAATGACACAGAATCCCTAGAGCAATTTTGCAGGGATACAGTAATAACCATCTGGCACTACCATGGTGGATG CCATGTA GGGAAGGTGGTTGATC AGCAACACCGTGTGCTTTGGAGTTTCAGGCGTCCGTNTA GTCGATGGCTCAACANTTTCTAGATCACCAGGGACGGACCCT NAGGCACGGTCATG ]
[+] EMBL OSS12536A [ ATGGTCCACTGTCTACGGGACATCTTGCCCTGATAGACACTGATGTCAAGAAGAACCCTGCGGTTACCTTCAACTACTTCAGTCATCCACAGGATCTCACTCGTTGCGTCTATGGTATCAAGACCATTGAACGNATACTGAAGACAAACCGTTTCTCTGAACTGTCTGCCAACACTGATGGACATTCAATGGAAAGAGTGCTCAATATGAGTGTGCAGGCTAATGTGAACTTGATACCCAAGCATACAAATGACACAGAATCCCTAGAGCAATTTTGCAGGGATACAGTAATAACCATCTGGCACTACCATGGTGGATG CCATGTAGGGGAAGGTGGTTGATCAAGCAACACCGTGTGCTTTGGAGTTTCAGGCGTCCGTGTAGGTCGATGGCTC ]
[+] EMBL AU088685 [ TAGAGCAATTTTGCAGGGATACAGTAATAACCATCTGGCACTACCATGGTGGATG CCATGTA GGGAAGGTGGTTGATC AGCAACACCGTGTGC TTGGAGTTTCAGGCGTCCGTGTA GTCGATGGCTCAACATTTTCTAGATCACCAGGGACGAACCCTCAAGCCACGGTCATGATGATGGGCAGATATTTTGGAGTGATGATCCTAAGGGGAAGACTAGGTCGAGCAGCTGGAGTGTAATCGATTCCTGGACACCAGCCTTTTGTTATGTGTGACCTAGAGAAGAAAAATTACTAATTATTGCTGGGATCTAGTGTGATTCACCGAAGAAAGA CAAGCTAGGAGTTTCATCTGTACCCAGTAATCATTTGTGTCATGTGATATTGCAGATCAAATGGTTTATTGAAAAAAA ]
[+] EMBL BI804960 [ CTACCATGGTGGATGCCCATGTA GGGAAGGTGGTTGATC AGCAACACCGTGTGC TTGGAGTTTCAGGCGTCCGTGTA GTCGATGGCTCAACATTTTCTAGATCACCAGGGACGAACCCTCAAGCCACGGTCATGATGATGGGCAGATATTTTGGAGTGATGATCCTAAGGGGAAGACTAGTTCGAGCAGCTGGAGTGTAATCGATTCCTGGACACCAGCCTTTTGTTATGTGTGACCTAGAGAAGAAAAATTACTAATTATTCCTGGGATCTAGTGTGATTCACCGAAGAAAGACCAAGCTAGGAGTTTCATCTGTACCCAGTAATCATTTGTGTCATGTGATATTGCAGATCAAATGGTTTATTGACCCCCCCCCCCCAAAAAAAAAA]
consensusID : consensus_9526#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 296 fasta sequence
[CTCCAACCGATCTTNTCTAGATCACCAGGGTACGNAACCCTCAAGCCACGGTCATGATGACTGGGCANGATATTTTGGAGTGATGATCCTAAGGGGAAGACTAGGTCGAGCAGCTGGAGTGTAATCGATTCCTGGACACCAGCCTTTTGTTATGTGTGACCTAGAGAAGAAAAATTACTAATTATTGCTGGGATCTAGTGTGATTCACCGAAGAAAGACAAGCTAGGAGTTTCATCTGTACCCAGTAATCATTTGTGTCATGTGATATTGCAGATCAAATGGTTTATTGAAAAAAA]
[+] EMBL AU162930 [CTCCAACCGATCTTNTCTAGATCACCAGGGTACGNAACCCTCAAGCCACGGTCATGATGACTGGGCANGATATTTTGGAGTGATGATCCTAAGGGGAAGACTAGGTCGAGCAGCTGGAGTGTAATCGATTCCTGGACACCAGCCTTTTGTTATGTGTGACCTAGAGAAGAAAAATTACTAATTATTGCTGGGATCTAGTGTGATTCACCGAAGAAAGACAAGCTAGGAGTTTCATCTGTACCCAGTAATCATTTGTGTCATGTGATATTGCAGATCAAATGGTTTATTGAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9526#0 GGGGAGGGAGAGAGGTTTTGCCACCGTTGTTTTGGAGGGAAGGAAAATCCTAAGAAGGGG 60
consensus_9526#1 ------------------------------------------------------------
consensus_9526#0 AAAGAGTTTAGCTTGGCAGGTGGTTCTCAGGCTCAATGGCTTTGAGCAAGAGAATGCTAT 120
consensus_9526#1 ------------------------------------------------------------
consensus_9526#0 TCATCTTCCAGGCCATGGTTTGCCTCTGCTCCTTCAGTTTATCCCAAGGCAACCAGCAAT 180
consensus_9526#1 ------------------------------------------------------------
consensus_9526#0 TCAGCTTAAGGAATCTCCCTACCCTCCAGAAGGCGAGCAGCTTCCCAGCGATGCGCCACG 240
consensus_9526#1 ------------------------------------------------------------
consensus_9526#0 AGACATACGACTACATTGTCGTCGGCGGGGGCACCGCCGGTTGCCCCCTGGCGGCGACAT 300
consensus_9526#1 ------------------------------------------------------------
consensus_9526#0 TGTCGCTCAAGTACAAGGTGCTCCTGCTGGAGAGGGGAGGGTCTCCGTATGGCAACCGCA 360
consensus_9526#1 ------------------------------------------------------------
consensus_9526#0 ACGTCTCCTACATGGAGAACTTCCACATTGGCCTGAGCAATATGGCGCCGGACTCGGCGT 420
consensus_9526#1 ------------------------------------------------------------
consensus_9526#0 CTCAGGCCTTCATCTCCACTGACGGCGTCATCAATGCCCGAGCGAGGGTGTTGGGAGGTG 480
consensus_9526#1 ------------------------------------------------------------
consensus_9526#0 GCACCTGCATCAATGCCGGCTTCTACAGCCGGGCCAGCTCAAACTTCATCCAGGAGGTAG 540
consensus_9526#1 ------------------------------------------------------------
consensus_9526#0 GCTGGGATGAAGACCTGGTGAATGAGTCCTTCCCTTGGGTGGAGGACAAGATCGTCCAGT 600
consensus_9526#1 ------------------------------------------------------------
consensus_9526#0 GGCCTAAGATCGCACCTTGGCAGGCTGCACTAAGGGATGGGCTACTCCAAGCAGGTGTAT 660
consensus_9526#1 ------------------------------------------------------------
consensus_9526#0 CTCCTTTCAATGGCTACACATATGACCATGTTTCTGGGACCAAAGTTGGTGGCACCATCT 720
consensus_9526#1 ------------------------------------------------------------
consensus_9526#0 TTGATGAGACTGGCTACCGCCACACAGCAGCCGACTTACTTGCAGCTGGAGACCCTAACA 780
consensus_9526#1 ------------------------------------------------------------
consensus_9526#0 ACCTAAGGGTGCTGCTTCATGCTAGTGTGAACAGGATAGTCTTTAACTCGCAGAGAGGGC 840
consensus_9526#1 ------------------------------------------------------------
consensus_9526#0 AACTGAAGCCAAGAGCAACCGGAGTTCAGTTCACCGATGAGAATGGAGGACTCCACCAGG 900
consensus_9526#1 ------------------------------------------------------------
consensus_9526#0 CATTCCTCAACAGCAACTGTGATAGTGAAATCATTGTCTCTGCTGGCGCAATTGGCAGCC 960
consensus_9526#1 ------------------------------------------------------------
consensus_9526#0 CCCAGCTGCTATTGCTCAGTGGGATTGGACCCAAGAATGACCTTAGGAGCCATAAAATTC 1020
consensus_9526#1 ------------------------------------------------------------
consensus_9526#0 CTGTAGTTCTCCATAACAAGTATGTGGGTAAAGGGATGGCTGATAACCCCATGAACTCCA 1080
consensus_9526#1 ------------------------------------------------------------
consensus_9526#0 TATTCATACCGACGAAAAGCCCCCCTCGCCAGTCCCTGATTGAGACTGTTGGAATAACTG 1140
consensus_9526#1 ------------------------------------------------------------
consensus_9526#0 AAGCTGGTGTGTTCATTGAGGCCAGTAGTGGTTTTGGCCAGTCACCAGAAAGCATCCATT 1200
consensus_9526#1 ------------------------------------------------------------
consensus_9526#0 GCCACCATGGAATCATGTCCGCTGAGATTGGACAGCTGTCCACAATTCCTCCGAAGGAAA 1260
consensus_9526#1 ------------------------------------------------------------
consensus_9526#0 GAAGCCTGGAAAAAGCACAGAAGTATGCAAATACCAAACTTAATCTACCCAAAGAGATAT 1320
consensus_9526#1 ------------------------------------------------------------
consensus_9526#0 TCCATGGTGGTTTTATCCTCGAGAAGATTGATGGTCCACTGTCTACGGGACATCTTGCCC 1380
consensus_9526#1 ------------------------------------------------------------
consensus_9526#0 TGATAGACACTGATGTCAAGAAGAACCCTGCGGTTACCTTCAACTACTTCAGTCATCCAC 1440
consensus_9526#1 ------------------------------------------------------------
consensus_9526#0 AGGATCTCACTCGTTGCGTCTATGGTATCAAGACCATTGAACGAATACTGAAGACAAACC 1500
consensus_9526#1 ------------------------------------------------------------
consensus_9526#0 GTTTCTCTGAACTGTCTGCCAACACTGATGGACATTCAATGGAAAGAGTGCTCAATATGA 1560
consensus_9526#1 ------------------------------------------------------------
consensus_9526#0 GTGTGCAGGCTAATGTGAACTTGATACCCAAGCATACAAATGACACAGAATCCCTAGAGC 1620
consensus_9526#1 ------------------------------------------------------------
consensus_9526#0 AATTTTGCAGGGATACAGTAATAACCATCTGGCACTACCATGGTGGATGCCATGTAGGGA 1680
consensus_9526#1 ------------------------------------------------------------
consensus_9526#0 AGGTGGTTGATCAGCAACACCGTGTGCTTGGAGTTTCAGGCGTCCGTGTAGTCGATGGCT 1740
consensus_9526#1 ----------------------------------------------------CTCCAAC- 7
* *
consensus_9526#0 CAACATTTTCTAGATCACCAGGG-ACGAA-CCCTCAAGCCACGGTCATGATGA-TGGGCA 1797
consensus_9526#1 CGATCTTNTCTAGATCACCAGGGTACGNAACCCTCAAGCCACGGTCATGATGACTGGGCA 67
* * ** *************** *** * *********************** ******
consensus_9526#0 G-ATATTTTGGAGTGATGATCCTAAGGGGAAGACTAGGTCGAGCAGCTGGAGTGTAATCG 1856
consensus_9526#1 NGATATTTTGGAGTGATGATCCTAAGGGGAAGACTAGGTCGAGCAGCTGGAGTGTAATCG 127
**********************************************************
consensus_9526#0 ATTCCTGGACACCAGCCTTTTGTTATGTGTGACCTAGAGAAGAAAAATTACTAATTATTG 1916
consensus_9526#1 ATTCCTGGACACCAGCCTTTTGTTATGTGTGACCTAGAGAAGAAAAATTACTAATTATTG 187
************************************************************
consensus_9526#0 CTGGGATCTAGTGTGATTCACCGAAGAAAGACAAGCTAGGAGTTTCATCTGTACCCAGTA 1976
consensus_9526#1 CTGGGATCTAGTGTGATTCACCGAAGAAAGACAAGCTAGGAGTTTCATCTGTACCCAGTA 247
************************************************************
consensus_9526#0 ATCATTTGTGTCATGTGATATTGCAGATCAAATGGTTTATTGAAAAAAACCCCCCAAAAA 2036
consensus_9526#1 ATCATTTGTGTCATGTGATATTGCAGATCAAATGGTTTATTGAAAAAAA----------- 296
*************************************************
consensus_9526#0 AAAAA 2041
consensus_9526#1 -----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||