cluster # 9531

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Oryza sativa
cluster # 9531 cluster # 9531 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9531#0 length = 771 sequences # 5

consensus_9531#1 length = 183 sequences # 1

consensusID : consensus_9531#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 771
fasta sequence

                              [GAAATCAAGAACTTAAAGGTCAATTGGTTGAGGGATCAGATGGGGTTGGTCGGCCAAGAGCCTGTGCTCTTTAATGACACAATCCGTGCTAAACATAGCCTACGGGAAGCATGGGGATGTCACTGAGGAGGAGCTCATCAAAGCTGCAAAGGCATCCAATGCACATGAGTTCATATCGAGCCTTCCCTAAGGATATGATACCACCGTGGGGGAGAGAGGGGTGCAGCTATCTGGTGGCCAGAAACAGCGGGTGGCTATTGCGAGGGCCATATTGAAAGATCCAAAGATACTACTTCTAGATGAGGCAACGAGTGCCTTGGATGCTGAATCTGAGCGCATTGTGCAGGATGCGTTAGATAATGTGATGGTTGGCAGGACTACGATTATTGTGGCGCACCGCCTCTCGACGATCAAAGGTGCTGATAT-CATTGCAGTTCTGAAGGATGGTGCGATAGCGGAGAAAGGAAGGCATGAGGCATTGATGAACATCAAAGATGGTGTCTATGCTTCACTTGTTGAACTCCGTTCAGGCTCATCATAATACTCAGGATAAGATTTTTGTTTTTTATTTACCCTCTCTGGGGATGTAATATATCTTCCTTGACCCTTTTTTGTTTTACAATTGAGGGTTGTAGTAGTATTAATTATTTGGATTTTAAAGTGGGATTTGAGAAGGTGCTCTCTGTATGTATCTACGCGGTGTCGGTTTATTAAGCAACGAGAAAGAAATATTGTCCTACAGATGCTGATATGTGGGATTGTCCAAAAAAA]

[+] EMBL AU091276             [GAAATCAAGAACTTAAAGGTCAATTGGTTGAGGGATCAGATGGGGTTGGTCGGCCAAGAGCCTGTGCTCTTTAATGACACAATCCGTGCTAAACATAGCCTACGGGAAGCATGGGGATGTCACTGAGGAGGAGCTCATCAAAGCTGCAAAGGCATCCAATGCACATGAGTTCATATCGAGCCTTCCCTAAGGATATGATACCACCGTGGGGGAGAGAGGGGTGCAGCTATCTGGTGGCCAGAAACAGCGGGTGGCTATTGCGAGGGCCATATTGAAAGATCCAAAGATACTACTTCTAGATGAGGCAACGAGTGCCTTGGATGCTGAATCTGAGCGCATTGTGCAGGATGCGTTAGATAATGTGATGGTTGGCAGGACTACGATTATTGTGGCGCACCGCCTCTCGACGATCAAAGGTGCTGATAT CATTGCAGTTCTGAAGGATGGTGCGATAGCGGAGAAAGGAAGGCATGAGGCATTGATGAACATCAAAGATGGTGTCTATGCTTCACTTGTTGAACTCCGTTCAGGCTCATCATAATACTCAGGATAAGATTTTTGTTTTTTATTTACCCTCTCTGGGGATGTAATATATCTTCCTTGACCCTTTTTTGTTTTACAATTGAGGGTTGTAGTAGTATTAATTATTTGGATTTTAAAGTGGGATTTGAGAAGGTGCTCTCTGTAaaaaa                                                                               ]
[+] EMBL AU091275             [                                                                                                                                                                                                                                                                                            AGATACTACTTCTAGATGAGGCAACGAGTGCCTTGGATGCTGAATCTGAGCGCATTGTGCAGGATGCGTTAGATAATGTGATGGTTGGCAGGACTACGATTATTGTGGCGCACCGCCTCTCGACGATCAAAGGTGCTGATATCCATTGCAGTTCTGAAGGATGGTGCGATAGCGGAGAAAGGAAGGCATGAGGCATTGATGAACATCAAAGATGGTGTCTATGCTTCACTTGTTGAACTCCGTTCAGGCTCATCATAATACTCAGGATAAGATTTTTGTTTTTTATTTACCCTCTCTGGGGATGTAATATATCTTCCTTGACCCTTTTTTGTTTTACAATTGAGGGTTGTAGTAGTATTAATTATTTGGATTTTAAAGTGGGATTTGAGAAGGTGCTCTCTGTATGTATCTACGCGGTGTCGGTTTATTANGCAACGAGAAAGAAATATTGTCCTACAGATGCTGATATGTGGGATTGTCCAAAAA  ]
[+] EMBL AU181260             [                                                                                                                                                                                                                                                                                                                              GGATGCTGAATCTGAGCGCATTGTGCAGGATGCGTTAGATAATGTGATGGTTGGCAGGACTACGATTATTGTGGCGCACCGCCTCTCGACGATCAAAGGTGCTGATAT CATTGCAGTTCTGAAGGATGGTGCGATAGCGGAGAAAGGAAGGCATGAGGCATTGATGAACATCAAAGATGGTGTCTATGCTTCACTTGTTGAACTCCGTTCAGGCTCATCATAATACTCAGGATAAGATTTTTGTTTTTTATTTACCCTCTCTGGGGATGTAATATATCTTCCTTGACCCTTTTTTGTTTTACAATTGAGGGTTGTAGTAGTATTAATTATTTGGATTTTAAAGTGGGATTTGAGAAGGTGCTCTCTGTATGTATCTACGCGGTGTCGGTTTATTAAGCAACGAGAAAGAAATATTGTCCTACAaaaaa                         ]
[+] EMBL AU181385             [                                                                                                                                                                                                                                                                                                                                ATGCTGAATCTGAGCGCATTGTGCAGGATGCGTTAGATAATGTGATGGTTGGCAGGACTACGATTATTGTGGCGCACCGCCTCTCGACGATCAAAGGTGCTGATAT CATTGCAGTTCTGAAGGATGGTGCGATAGCGGAGAAAGGAAGGCATGAGGCATTGATGAACATCAAAGATGGTGTCTATGCTTCACTTGTTGAACTCCGTTCAGGCTCATCATAATACTCAGGATAAGATTTTTGTTTTTTATTTACCCTCTCTGGGGATGTAATATATCTTCCTTGACCCTTTTTTGTTTTACAATTGAGGGTTGTAGTAGTATTAATTATTTGGATTTTAAAGTGGGATTTGAGAAGGTGCTCTCTGTATGTATCTACGCGGTGTCGGTTTATTAAGCAACGAGAAAGAAATATTGTCCTACAGATGCTGATATGTGGGATTGTCCAAAAA  ]
[+] EMBL AU181217             [                                                                                                                                                                                                                                                                                                                                                          GATGCGTTAGATAATGTGATGGTTGGCAGGACTACGATTATTGTGGCGCACCGCCTCTCGACGATCAAAGGTGCTGATAT CATTGCAGTTCTGAAGGATGGTGCGATAGCGGAGAAAGGAAGGCATGAGGCATTGATGAACATCAAAGATGGTGTCTATGCTTCACTTGTTGAACTCCGTTCAGGCTCATCATAATACTCAGGATAAGATTTTTGTTTTTTATTTACCCTCTCTGGGGATGTAATATATCTTCCTTGACCCTTTTTTGTTTTACAATTGAGGGTTGTAGTAGTATTAATTATTTGGATTTTAAAGTGGGATTTGAGAAGGTGCTCTCTGTATGTATCTACGCGGTGTCGGTTTATTAAGCAACGAGAAAGAAATATTGTCCTACAGATGCTGATATGTGGGATTGTCCAAAAAAA]




>consensus_9531#0
GAAATCAAGAACTTAAAGGTCAATTGGTTGAGGGATCAGATGGGGTTGGTCGGCCAAGAG
CCTGTGCTCTTTAATGACACAATCCGTGCTAAACATAGCCTACGGGAAGCATGGGGATGT
CACTGAGGAGGAGCTCATCAAAGCTGCAAAGGCATCCAATGCACATGAGTTCATATCGAG
CCTTCCCTAAGGATATGATACCACCGTGGGGGAGAGAGGGGTGCAGCTATCTGGTGGCCA
GAAACAGCGGGTGGCTATTGCGAGGGCCATATTGAAAGATCCAAAGATACTACTTCTAGA
TGAGGCAACGAGTGCCTTGGATGCTGAATCTGAGCGCATTGTGCAGGATGCGTTAGATAA
TGTGATGGTTGGCAGGACTACGATTATTGTGGCGCACCGCCTCTCGACGATCAAAGGTGC
TGATATCATTGCAGTTCTGAAGGATGGTGCGATAGCGGAGAAAGGAAGGCATGAGGCATT
GATGAACATCAAAGATGGTGTCTATGCTTCACTTGTTGAACTCCGTTCAGGCTCATCATA
ATACTCAGGATAAGATTTTTGTTTTTTATTTACCCTCTCTGGGGATGTAATATATCTTCC
TTGACCCTTTTTTGTTTTACAATTGAGGGTTGTAGTAGTATTAATTATTTGGATTTTAAA
GTGGGATTTGAGAAGGTGCTCTCTGTATGTATCTACGCGGTGTCGGTTTATTAAGCAACG
AGAAAGAAATATTGTCCTACAGATGCTGATATGTGGGATTGTCCAAAAAAA

consensusID : consensus_9531#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 183
fasta sequence

                              [ATTTTTGTTTTTTATTTACCCTCTCTGGGGATGTAATATATCTTCCTTGACCCTTTTTTGTTTTACAATTGAGGGTTGTAGTAGTATTAATTATTTGGATTTTAAAGTGGGATTTGAGAAGGTGCTCTCTGTATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF319808             [ATTTTTGTTTTTTATTTACCCTCTCTGGGGATGTAATATATCTTCCTTGACCCTTTTTTGTTTTACAATTGAGGGTTGTAGTAGTATTAATTATTTGGATTTTAAAGTGGGATTTGAGAAGGTGCTCTCTGTATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_9531#1
ATTTTTGTTTTTTATTTACCCTCTCTGGGGATGTAATATATCTTCCTTGACCCTTTTTTG
TTTTACAATTGAGGGTTGTAGTAGTATTAATTATTTGGATTTTAAAGTGGGATTTGAGAA
GGTGCTCTCTGTATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9531#0      GAAATCAAGAACTTAAAGGTCAATTGGTTGAGGGATCAGATGGGGTTGGTCGGCCAAGAG 60
consensus_9531#1      ------------------------------------------------------------
                                                                                  

consensus_9531#0      CCTGTGCTCTTTAATGACACAATCCGTGCTAAACATAGCCTACGGGAAGCATGGGGATGT 120
consensus_9531#1      ------------------------------------------------------------
                                                                                  

consensus_9531#0      CACTGAGGAGGAGCTCATCAAAGCTGCAAAGGCATCCAATGCACATGAGTTCATATCGAG 180
consensus_9531#1      ------------------------------------------------------------
                                                                                  

consensus_9531#0      CCTTCCCTAAGGATATGATACCACCGTGGGGGAGAGAGGGGTGCAGCTATCTGGTGGCCA 240
consensus_9531#1      ------------------------------------------------------------
                                                                                  

consensus_9531#0      GAAACAGCGGGTGGCTATTGCGAGGGCCATATTGAAAGATCCAAAGATACTACTTCTAGA 300
consensus_9531#1      ------------------------------------------------------------
                                                                                  

consensus_9531#0      TGAGGCAACGAGTGCCTTGGATGCTGAATCTGAGCGCATTGTGCAGGATGCGTTAGATAA 360
consensus_9531#1      ------------------------------------------------------------
                                                                                  

consensus_9531#0      TGTGATGGTTGGCAGGACTACGATTATTGTGGCGCACCGCCTCTCGACGATCAAAGGTGC 420
consensus_9531#1      ------------------------------------------------------------
                                                                                  

consensus_9531#0      TGATATCATTGCAGTTCTGAAGGATGGTGCGATAGCGGAGAAAGGAAGGCATGAGGCATT 480
consensus_9531#1      ------------------------------------------------------------
                                                                                  

consensus_9531#0      GATGAACATCAAAGATGGTGTCTATGCTTCACTTGTTGAACTCCGTTCAGGCTCATCATA 540
consensus_9531#1      ------------------------------------------------------------
                                                                                  

consensus_9531#0      ATACTCAGGATAAGATTTTTGTTTTTTATTTACCCTCTCTGGGGATGTAATATATCTTCC 600
consensus_9531#1      --------------ATTTTTGTTTTTTATTTACCCTCTCTGGGGATGTAATATATCTTCC 46
                                    **********************************************

consensus_9531#0      TTGACCCTTTTTTGTTTTACAATTGAGGGTTGTAGTAGTATTAATTATTTGGATTTTAAA 660
consensus_9531#1      TTGACCCTTTTTTGTTTTACAATTGAGGGTTGTAGTAGTATTAATTATTTGGATTTTAAA 106
                      ************************************************************

consensus_9531#0      GTGGGATTTGAGAAGGTGCTCTCTGTATGTATCTACGCGGTGTCGGTTTATTAAGCAACG 720
consensus_9531#1      GTGGGATTTGAGAAGGTGCTCTCTGTATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 166
                      *******************************   *              *  **  **  

consensus_9531#0      AGAAAGAAATATTGTCCTACAGATGCTGATATGTGGGATTGTCCAAAAAAA 771
consensus_9531#1      AAAAAAAAAAAAAAAAA---------------------------------- 183
                      * *** *** *