cluster # 9534

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Oryza sativa
cluster # 9534 cluster # 9534 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9534#0 length = 873 sequences # 3

consensus_9534#1 length = 434 sequences # 3

consensusID : consensus_9534#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 873
fasta sequence

                              [CACGAGAGCGGTGGCTATGCAGCCATGCGGGCGCCGTCTCCTCGGCGCCGGCACCGCCTCGCCGCCGCCGCTGCCGGGCTTGGGTTCGGCTTCGGCCCACTCGATGGACCGCGCGCAGCGGGCGCACATGGTGCGGGCGCTGGGGGTGACCACCACGGTGCTCTTCGTCGCCAGCGTCTCCTACATCGCGCTCACCGCGCTCTACGCCTGCTTCTGCGACGGCGGCGGGCGGCGACGGCGAGAAGACGGCGGGTCGTCGTCGGTGCGCCCCGAGCCGTCCGAGGAGACCAAGCGCGCGCTCGACGGGATCCCGGTGCACGTGGTCCAGATGCCGCCCCGCGACGGCGGCGGCGGCGGCGCCGACGAGGAGGGCGGCAGCGGCGACTGCGCGGTGTGCCTGGCGGAGTACGCCGCCGGGGACGAGGTGCGCGTGCTGCCGGCGTGCGGGCATGGGTTCCACAGGGAGTGCGTCGACCGGTGGCTGCTCACGCGCGCGCCCACCTGCCCCGTCTGCCGCGCACCCGTCGTCGCGCGCGTCGAGGGCCCGGACGACGACGCCAAGGAGGATTACTGCGGCGACGGCGAGAGCGTCGAGAGGCACGGCGGCGGCGGCGGCGACATTGGCTTCCTGTCCGTCGCCGGCGAGTCCCGCGTGCTTCCTGCGATTTGATTTTGCTACGAGTACTCATCAGCTGTAATAGGGTACTTAGTAGGTGTTTAGCTCAATTTTGCTAGCTGTGGACAAACGTAGCTTAGTAGGATGATTCGAGTTTGTTTATTGGCGAGAGCAATAACGATCATACGAGTAGTTTCACTTTCAGGGTTACAAGTTCATGTGCGATCAATCTGGTTATTTAGTTATTATACCTTCTT]

[+] EMBL AK108282             [CACGAGAGCGGTGGCTATGCAGCCATGCGGGCGCCGTCTCCTCGGCGCCGGCACCGCCTCGCCGCCGCCGCTGCCGGGCTTGGGTTCGGCTTCGGCCCACTCGATGGACCGCGCGCAGCGGGCGCACATGGTGCGGGCGCTGGGGGTGACCACCACGGTGCTCTTCGTCGCCAGCGTCTCCTACATCGCGCTCACCGCGCTCTACGCCTGCTTCTGCGACGGCGGCGGGCGGCGACGGCGAGAAGACGGCGGGTCGTCGTCGGTGCGCCCCGAGCCGTCCGAGGAGACCAAGCGCGCGCTCGACGGGATCCCGGTGCACGTGGTCCAGATGCCGCCCCGCGACGGCGGCGGCGGCGGCGCCGACGAGGAGGGCGGCAGCGGCGACTGCGCGGTGTGCCTGGCGGAGTACGCCGCCGGGGACGAGGTGCGCGTGCTGCCGGCGTGCGGGCATGGGTTCCACAGGGAGTGCGTCGACCGGTGGCTGCTCACGCGCGCGCCCACCTGCCCCGTCTGCCGCGCACCCGTCGTCGCGCGCGTCGAGGGCCCGGACGACGACGCCAAGGAGGATTACTGCGGCGACGGCGAGAGCGTCGAGAGGCACGGCGGCGGCGGCGGCGACATTGGCTTCCTGTCCGTCGCCGGCGAGTCCCGCGTGCTTCCTGCGATTTGATTTTGCTACGAGTACTCATCAGCTGTAATAGGGTACTTAGTAGGTGTTTAGCTCAATTTTGCTAGCTGTGGACAAACGTAGCTTAGTAGGATGATTCGAGTTTGTTTATTGGCGAGAGCAATAACGATCATACGAGTAGTTTCACTTTCAGGGTTACAAGTTCATGTGCGATCAATCTGGTTATTTAGTTATTATACCTTCTT]
[+] EMBL OS0482A              [CACGAGAGCNGNGGCTATGCAGCCATGCGGGCGCCGTCTCCTCGGCGCCGGCACNGCCTNGCCGCCGCCGCTGCCGGGCTTGGGTTCGGCTTCGGCCCACTCGATGGACCGCGCGCAG GGNCGCACATNGTGCGGGCGCTGGGGGTGACCACCACGGTGCTCTTNGTCGCCAGCGTCTCCTACATCGCGCTCACCGCGCTCTACGCCTGCTTCTGCGACGGCGGCGGGCGGCGACGGCGAGAAGACGGCGGGTNGTCGTCGGTGCGCCCCGAGCNGTCCGAGGAGACCAAGCGCGCGCTCGACGGGATCCCGGTGCACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AU166396             [                                                                                                                        GGCGCACATGGTGCGGGCGCTGGGGGTGACCACCACGGTGCTCTTCGTCGCCAGCGTCTCCTACATCGCGCTCACCGCGCTCTACGCCTGCTTCTGCGACGGCGGCGGGCGGCGACGGCGAGAAGACGGCGGGTCGTCGTCGGTGCGCCCCGAGCCGTCCGAGGAGACCAAGCGCGCGCTCGACGGGATCCCGGTGCACGTGGTCCAGATGCCGCCCCGCGACGGCGGCGGCGGCGGCGCCGACGAGGAGGGCGGCAGCGGCGACTGCGCGGTGTGCCTGGCGGAGTACGCCGCCGGGGACGAGGTGCGCGTGCTGCCGGCGTGCGGGCATGGGTTCCACAGGGAGTGCGTCGACCGGTGGCTGCTCACGCGCGCGCCCACCTGCCCCGTCTGCCGCGCACCCGTCGTCGCGCGCGTCGAGGGCCCGG                                                                                                                                                                                                                                                                                                                                     ]




>consensus_9534#0
CACGAGAGCGGTGGCTATGCAGCCATGCGGGCGCCGTCTCCTCGGCGCCGGCACCGCCTC
GCCGCCGCCGCTGCCGGGCTTGGGTTCGGCTTCGGCCCACTCGATGGACCGCGCGCAGCG
GGCGCACATGGTGCGGGCGCTGGGGGTGACCACCACGGTGCTCTTCGTCGCCAGCGTCTC
CTACATCGCGCTCACCGCGCTCTACGCCTGCTTCTGCGACGGCGGCGGGCGGCGACGGCG
AGAAGACGGCGGGTCGTCGTCGGTGCGCCCCGAGCCGTCCGAGGAGACCAAGCGCGCGCT
CGACGGGATCCCGGTGCACGTGGTCCAGATGCCGCCCCGCGACGGCGGCGGCGGCGGCGC
CGACGAGGAGGGCGGCAGCGGCGACTGCGCGGTGTGCCTGGCGGAGTACGCCGCCGGGGA
CGAGGTGCGCGTGCTGCCGGCGTGCGGGCATGGGTTCCACAGGGAGTGCGTCGACCGGTG
GCTGCTCACGCGCGCGCCCACCTGCCCCGTCTGCCGCGCACCCGTCGTCGCGCGCGTCGA
GGGCCCGGACGACGACGCCAAGGAGGATTACTGCGGCGACGGCGAGAGCGTCGAGAGGCA
CGGCGGCGGCGGCGGCGACATTGGCTTCCTGTCCGTCGCCGGCGAGTCCCGCGTGCTTCC
TGCGATTTGATTTTGCTACGAGTACTCATCAGCTGTAATAGGGTACTTAGTAGGTGTTTA
GCTCAATTTTGCTAGCTGTGGACAAACGTAGCTTAGTAGGATGATTCGAGTTTGTTTATT
GGCGAGAGCAATAACGATCATACGAGTAGTTTCACTTTCAGGGTTACAAGTTCATGTGCG
ATCAATCTGGTTATTTAGTTATTATACCTTCTT

consensusID : consensus_9534#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 434
fasta sequence

                              [GGGGACGAGGTGCGCGTGCTGCCGGCGTGCGGGCATGGGTTCCACAGGGAGTGCGTCGACCGGTGGCTGCTCACGCGCGCGCCCACCTGCCCCGTNTGCCGCGCACCCGTCGTCGCGCGCGTCGAGGGCCCGGACGACGACGCCAAGGAGGATTACTNCGGCGACGGCGANAGCGTCGAGAGGCACGGCGGCGGCGGCGGCGACATTGGCTTCCTGTCCGTCGCCGGCGAGTCCCGCGTGCTTCCTGCGATTTGATTTTGCTACGAGTACTCATCAGCTGTAATAGGGTACTTAGTAGGTGTTTAGCTCAATTTTGCTAGCTGTGGACAAACGTAGCTTAGTAGGATGATTCGAGTTTGTTTATTGGCGAGAGCAATAACGATCATACGAGTAGTTTCACTTTCAGGGTTACAAGTTC-----NAA--AAAAAAAAAAAAA]

[+] EMBL AU166397             [GGGGACGAGGTGCGCGTGCTGCCGGCGTGCGGGCATGGGTTCCACAGGGAGTGCGTCGACCGGTGGCTGCTCACGCGCGCGCCCACCTGCCCCGTNTGCCGCGCACCCGTCGTCGCGCGCGTCGAGGGCCCGGACGACGACGCCAAGGAGGATTACTNCGGCGACGGCGANAGCGTCGANAGGCACGGCGGCGGCGGCGGCGACATTGGCTTCCTGTCCGTCGCCGGCGAGTCCCGCGTGCTTCCTGCGATTTGATTTTGCTACGAGTACTCATCAGCTGTAATAGGGTACTTAGTAGGTGTTTAGCTCAATTTTGCTAGCTGTGGACAAACGTAGCTTAGTAGGATGATTCGAGTTTGTTTATTGGCGAGAGCAATAACGATCATACGAGTAGTTTCACTTTCAGGGTTACAAGTTC     NAA  AAAAAAAAAAAAA]
[-] EMBL CA761771             [                                                                                                                                   aGAGGACGA GACAAGGGGGATTACTGCGGCGACGGCGAGAGCATCGAGAGGCACGGCGGCGGCGGCGGCGACATTGGCTTCCTGTCCGTCGCCGGCGAGTCCCGCGTGCTTCCTGCGATTTGATTTTGCTACGAGTACTCATCAGCTGTAATAGGGTACTTAGTAGGTGTTTAGCTCAATTTTGCTAGCTGTGGACAAACGTAGCTGAGTAGGATGATTCGAGTTTGTTTATTGGCGAGATCAATAACGATCATACGAGTAGTTTCACTTTCAGGGTTAAAA          AA  AAAAAAta     ]
[+] EMBL AU091623             [                                                                                                                                                                                   GAGGCACGGCGGCGGCGGCGGCGACATTGGCTTCCTGTCCGTCGCCGGCGAGTCCCGCGTGCTTCCTGCGATTTGATTTTGCTACGAGTACTCATCAGCTGTAATAGGGTACTTAGTAGGTGTTTAGCTCAATTTTGCTAGCTGTGGACAAACGTAGCTTAGTAGGATGATTCGAGTTTGTTTATTGGCGAGAGCAATAACGATCATACGAGTAGTTTCACTTTCAGGGTTACAAGTTCATGTGNGATCAAAAAAAAAAAAA]




>consensus_9534#1
GGGGACGAGGTGCGCGTGCTGCCGGCGTGCGGGCATGGGTTCCACAGGGAGTGCGTCGAC
CGGTGGCTGCTCACGCGCGCGCCCACCTGCCCCGTNTGCCGCGCACCCGTCGTCGCGCGC
GTCGAGGGCCCGGACGACGACGCCAAGGAGGATTACTNCGGCGACGGCGANAGCGTCGAG
AGGCACGGCGGCGGCGGCGGCGACATTGGCTTCCTGTCCGTCGCCGGCGAGTCCCGCGTG
CTTCCTGCGATTTGATTTTGCTACGAGTACTCATCAGCTGTAATAGGGTACTTAGTAGGT
GTTTAGCTCAATTTTGCTAGCTGTGGACAAACGTAGCTTAGTAGGATGATTCGAGTTTGT
TTATTGGCGAGAGCAATAACGATCATACGAGTAGTTTCACTTTCAGGGTTACAAGTTCNA
AAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9534#0      CACGAGAGCGGTGGCTATGCAGCCATGCGGGCGCCGTCTCCTCGGCGCCGGCACCGCCTC 60
consensus_9534#1      ------------------------------------------------------------
                                                                                  

consensus_9534#0      GCCGCCGCCGCTGCCGGGCTTGGGTTCGGCTTCGGCCCACTCGATGGACCGCGCGCAGCG 120
consensus_9534#1      ------------------------------------------------------------
                                                                                  

consensus_9534#0      GGCGCACATGGTGCGGGCGCTGGGGGTGACCACCACGGTGCTCTTCGTCGCCAGCGTCTC 180
consensus_9534#1      ------------------------------------------------------------
                                                                                  

consensus_9534#0      CTACATCGCGCTCACCGCGCTCTACGCCTGCTTCTGCGACGGCGGCGGGCGGCGACGGCG 240
consensus_9534#1      ------------------------------------------------------------
                                                                                  

consensus_9534#0      AGAAGACGGCGGGTCGTCGTCGGTGCGCCCCGAGCCGTCCGAGGAGACCAAGCGCGCGCT 300
consensus_9534#1      ------------------------------------------------------------
                                                                                  

consensus_9534#0      CGACGGGATCCCGGTGCACGTGGTCCAGATGCCGCCCCGCGACGGCGGCGGCGGCGGCGC 360
consensus_9534#1      ------------------------------------------------------------
                                                                                  

consensus_9534#0      CGACGAGGAGGGCGGCAGCGGCGACTGCGCGGTGTGCCTGGCGGAGTACGCCGCCGGGGA 420
consensus_9534#1      -------------------------------------------------------GGGGA 5
                                                                             *****

consensus_9534#0      CGAGGTGCGCGTGCTGCCGGCGTGCGGGCATGGGTTCCACAGGGAGTGCGTCGACCGGTG 480
consensus_9534#1      CGAGGTGCGCGTGCTGCCGGCGTGCGGGCATGGGTTCCACAGGGAGTGCGTCGACCGGTG 65
                      ************************************************************

consensus_9534#0      GCTGCTCACGCGCGCGCCCACCTGCCCCGTCTGCCGCGCACCCGTCGTCGCGCGCGTCGA 540
consensus_9534#1      GCTGCTCACGCGCGCGCCCACCTGCCCCGTNTGCCGCGCACCCGTCGTCGCGCGCGTCGA 125
                      ****************************** *****************************

consensus_9534#0      GGGCCCGGACGACGACGCCAAGGAGGATTACTGCGGCGACGGCGAGAGCGTCGAGAGGCA 600
consensus_9534#1      GGGCCCGGACGACGACGCCAAGGAGGATTACTNCGGCGACGGCGANAGCGTCGAGAGGCA 185
                      ******************************** ************ **************

consensus_9534#0      CGGCGGCGGCGGCGGCGACATTGGCTTCCTGTCCGTCGCCGGCGAGTCCCGCGTGCTTCC 660
consensus_9534#1      CGGCGGCGGCGGCGGCGACATTGGCTTCCTGTCCGTCGCCGGCGAGTCCCGCGTGCTTCC 245
                      ************************************************************

consensus_9534#0      TGCGATTTGATTTTGCTACGAGTACTCATCAGCTGTAATAGGGTACTTAGTAGGTGTTTA 720
consensus_9534#1      TGCGATTTGATTTTGCTACGAGTACTCATCAGCTGTAATAGGGTACTTAGTAGGTGTTTA 305
                      ************************************************************

consensus_9534#0      GCTCAATTTTGCTAGCTGTGGACAAACGTAGCTTAGTAGGATGATTCGAGTTTGTTTATT 780
consensus_9534#1      GCTCAATTTTGCTAGCTGTGGACAAACGTAGCTTAGTAGGATGATTCGAGTTTGTTTATT 365
                      ************************************************************

consensus_9534#0      GGCGAGAGCAATAACGATCATACGAGTAGTTTCACTTTCAGGGTTACAAGTTCATGTGCG 840
consensus_9534#1      GGCGAGAGCAATAACGATCATACGAGTAGTTTCACTTTCAGGGTTACAAGTTCNAAAAAA 425
                      *****************************************************       

consensus_9534#0      ATCAATCTGGTTATTTAGTTATTATACCTTCTT 873
consensus_9534#1      AAAAAAAAA------------------------ 434
                      *  **