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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9539#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1177 fasta sequence
[TACTGCTGCTGATCTCGTATTGGGGGTCACTTGTTCTTCTTCTTTTACTGACCTTGTTGAATTGAACGCAACAATTTTCTTGGTCGGAATCCAGGAGGGAGAGGATTAGAGCAAGGAGCAGCGTCCTGAGGCGTGAAGGACCCACCTTTGCTGCTGTTCTTGGAGCTTCCCTGC-CGAAATGGCCCATAAAGGAGTTCCTAAATTTGGAAGCTGGGAGGATGAAGACCGTGGTGAACACCTCTACACACAGTATTTCGAAAATGCCCGCAAGGGTA-AATCTCCAGGGAGGTCTGTTAATCCAAACAATCATCATGGAGATACTGAAGCACTCTCTAAGGCCTCTCCCCTGCACGCTGGATCTGATCCAGCCATGAGAAAGCCCAAGGATGACAGACGCTCAAACCGAGAAGGTGATCTTCGTCAGCACGAAACCACTGTTCGAAAACCATATGCTGGGTCACCTAATCATAGATATGGGGATCATACCAACTATGACAATGC-TGTGA-GAAAAACCGGCATAGAGAAGT-CACCCGTTCATCCCCGTCACCAGGCAAGAGCTGCAAACAAGGGTGGAGTTTCGTCTCCTTCACGTGACCGTAGGGGTTCATTGGAAGGAAACCGTGGATCTGCTCCCACTACACCTGGAAGGTCCAAGTTCAGATCAACTGGCCGTGGTGATGAGACGCCTGATAGAGGATCAGCCGTGCCAAAGTTTGGAGAATGGGATGAGAAAGATCCTTCTACAGGTGAAGGTTTCACTGACATATTTGAGAAGGTGAGGGAGGAGAAACAGTCTGGTACCGGCAACGCTCCCGTCATGACCAGCGAGGCAGATTATATCAAACGCTATCAACAACGCAAATATGAATCCACAGGCTGCTCATGCTTCAGTTGGTTCAAGAACTGAACTGACAGCCATCCAGCCAAGTCCTGTCAGCGAGGCCTACATAAATTTGTGTTGAAATGTATCATTGTGAGATGAATACCTCCAATCTGTTGTCATTGTTGAGATATTGTTTGGTAGCGAGACATGACATGTATTTACACGAATTTGAAGCTTCTTGTTGAGCATTTTGTGCTTTTTTTTGTATAATGAGGGATTCGTTTATCTTGGAAGGCATGTGTCTGGATAGAGGATCCAAATCCTTACGACAAAGGCTAAATTTTAACCAAAAAA]
[+] EMBL OSC104511 [TACTGCTGCTGATCTCGTATTGGGGGTCACTTGTTCTTCTTCTTTTACTGACCTTGTTGAATTGAACGCAACAATTTTCTTGGTCGGAATCCAGGAGGGAGAGGATTAGAGCAAGGAGCAGCGTCCTGAGGCGTGAAGGACCCACCTTTGCTGCTGTTCTTGGAGCTTCCCTGCACGAAATGGCCCATAAAGGAGTTCCTAAATTTGGAAGCTGGGAGGATGAAGACCGTGGTGAACACCTCTACACACAGTATTTCGAAAATGCCCGCAAGGTTACNATNTCCAGGGNGGTCTGTTAATCCAAACANTCATCATGGAGATACTGAAGCACTCNCTAAGGCCTCTCCCCTGCA ]
[+] EMBL AK065662 [ GGGGGTCACTTGTTCTTCTTCTTTTACTGACCTTGTTGAATTGAACGCAACAATTTTCTTGGTCGGAATCCAGGAGGGAGAGGATTAGAGCAAGGAGCAGCGTCCTGAGGCGTGAAGGACCCACCTTTGCTGCTGTTCTTGGAGCTTCCCTGC CGAAATGGCCCATAAAGGAGTTCCTAAATTTGGAAGCTGGGAGGATGAAGACCGTGGTGAACACCTCTACACACAGTATTTCGAAAATGCCCGCAAGGGTA AATCTCCAGGGAGGTCTGTTAATCCAAACAATCATCATGGAGATACTGAAGCACTCTCTAAGGCCTCTCCCCTGCACGCTGGATCTGATCCAGCCATGAGAAAGCCCAAGGATGACAGACGCTCAAACCGAGAAGGTGATCTTCGTCAGCACGAAACCACTGTTCGAAAACCATATGCTGGGTCACCTAATCATAGATATGGGGATCATACCAACTATGACAATGC TGTGA GAAAAACCGGCATAGAGAAGT CACCCGTTCATCCCCGTCACCAGGCAAGAGCTGCAAACAAGGGTGGAGTTTCGTCTCCTTCACGTGACCGTAGGGGTTCATTGGAAGGAAACCGTGGATCTGCTCCCACTACACCTGGAAGGTCCAAGTTCAGATCAACTGGCCGTGGTGATGAGACGCCTGATAGAGGATCAGCCGTGCCAAAGTTTGGAGAATGGGATGAGAAAGATCCTTCTACAGGTGAAGGTTTCACTGACATATTTGAGAAGGTGAGGGAGGAGAAACAGTCTGGTACCGGCAACGCTCCCGTCATGACCAGCGAGGCAGATTATATCAAACGCTATCAACAACGCAAATATGAATCCACAGGCTGCTCATGCTTCAGTTGGTTCAAGAACTGAACTGACAGCCATCCAGCCAAGTCCTGTCAGCGAGGCCTACATAAATTTGTGTTGAAATGTATCATTGTGAGATGAATACCTCCAATCTGTTGTCATTGTTGAGATATTGTTTGGTAGCGAGACATGACATGTATTTACACGAATTTGAAGCTTCTTGTTGAGCATTTTGTGCTTTTTTTTGTATAATGAGGGATTCG ]
[+] EMBL CF281185 [ GGGGGTCACTTGTTCTTCTTCTTTTACTGACCTTGTTGAATTGAACGCAACAATTTTCTTGGTCGGAATCCAGGAGGGAGAGGATTAGAGCAAGGAGCAGCGTCCTGAGGCGTGAAGGACCCACCTTTGCTGCTGTTCTTGGAGCTTCCCTGC CGAAATGGCCCATAAAGGAGTTCCTAAATTTGGAAGCTGGGAGGATGAAGACCGTGGTGAACACCTCTACACACAGTATTTCGAAAATGCCCGCAAGGGTA AATCTCCAGGGAGGTCTGTTAATCCAAACAATCATCATGGAGATACTGAAGCACTCTCTAAGGCCTCTCCCCTGCACGCTGGATCTGATCCAGCCATGAGAAAGCCCAAGGATGACAGACGCTCAAACCGAGAAGGTGATCTTCGTCAGCACGAAACCACTGTTCGAAAACCATATGCTGAGTC ]
[+] EMBL AU092089 [ TGCTTGTGANGAAAACCCGGCATAGAGAAGTCCACCCGTTCATCCCCGTCACCAGGCAAGAGCTGCAACCAA GGTGGAGTTTCGTCTCCTTCACGTGACCGTAGGGGTTCATTGGAAGGAAACCGTGGATCTGCTCCCACTACACCTGAAAGGTCCAAGTTCAGATCAACTGGCCGTGGTGATGAGACGCCTGATAGAGGATCAGCCGTGCCAAAGTTTGGAGAATGGGATGAGAAAGATCCTTCTACAGGTGAAGGTTTCACTGACATATTTGAGAAGGTGAGGGAGGAGAAACAGTCTGGTACCGGCAACGCTCCCGTCATGACCAGCGAGGCAGATTATATCAAACGCTATCAACAACGCAAATATGAATCCACAGGCTGCTCATGCTTCAGTTGGTTCAAGAACTGAACTGACAGCCATCCAGCCAAGTCCTGTCAGCGAGGCCTACATAAATTTGTGTTGAAATGTATCATTGTGAGATGAATACCTCCAATCTGTTGTCATTGTTGAGATATTGTTTGGTAGCGAGACATGACATGTATTTACACGAATTTGAAGCTTCTTGTTGAGCATTTTGTGCTTTTTTTTGTATAATGAGGGATTCGTTTATCTTGGAAGGCATGTGTCTGGATAGAGGATCCAAATCCTTACGACAAAGGCTAAATTTTAACCAAAAAA]
[-] EMBL AU225772 [ ccgctGAGAATGGGATGAGAAAGATCCTTCTACAGGTGAAGGTTTCACTGACATATTTGAGAAGGTGAGGGAGGAGAAACAGTCTGGTACCGGCAACGCTCCCGTCATGACCAGCGAGGCAGATTATATCAAACGCTATCAACAACGCAAATATGAATCCACAGGCTGCTCATGCTTCAGTTGGTTCAAGAACTGAACTGACAGCCATCCAGCCAAGTCCTGTCAGCGAGGCCTACATAAATTTGTGTTGAAATGTATCATTGTGAGATGAATACCTCCAATCTGTTGTCATTGTTGAGATATTGTTTGGTAGCGAGACATGACATGTATTTACACGAATTTGAAGCTTCTTGTTGAGCATTTTGAGCggc ]
consensusID : consensus_9539#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 484 fasta sequence
[GTAGGGGTTCATTGGAAGGAAACCGTGGATCTGCTCCCACTACACCTGAAGGTCCAAGTTCAGATCAACTGGCCGTGGTGATGAGACGCCTGATAGAGGATCAGCCGTGCCAAAGTTTGGAGAATGGGATGAGAAAGATCCTTCTACAGGTGAAGGTTTCACTGACATATTTGAGAAGGTGAGGGAGGAGAAACAGTTTGGTACCGGCAACGCTCCCGTCATGACCAGCGAGGCAGATTATATCAAACGCTATCAACAACGCAAATATGAATCCACAGGCTGATAAAGCTTCAGTTGGTTCAAGAACTGAACTGACAGCCATCCAAAAAAATCCTGTCAGCGAGGCCTACATAAATTTGTGTTGAAATGTATCATTGTGAGATGAATACCTCCAATCTGTTGTCATTGTTGAGATATTGTTTGGTAGCGAGACATGACATGTATTTACACGAATTTGAGGTTTTTTGTTGAGCAAAAAAAAAAA]
[-] EMBL CF281186 [GTAGGGGTTCATTGGAAGGAAACCGTGGATCTGCTCCCACTACACCTGAAGGTCCAAGTTCAGATCAACTGGCCGTGGTGATGAGACGCCTGATAGAGGATCAGCCGTGCCAAAGTTTGGAGAATGGGATGAGAAAGATCCTTCTACAGGTGAAGGTTTCACTGACATATTTGAGAAGGTGAGGGAGGAGAAACAGTTTGGTACCGGCAACGCTCCCGTCATGACCAGCGAGGCAGATTATATCAAACGCTATCAACAACGCAAATATGAATCCACAGGCTGATAAAGCTTCAGTTGGTTCAAGAACTGAACTGACAGCCATCCAAAAAAATCCTGTCAGCGAGGCCTACATAAATTTGTGTTGAAATGTATCATTGTGAGATGAATACCTCCAATCTGTTGTCATTGTTGAGATATTGTTTGGTAGCGAGACATGACATGTATTTACACGAATTTGAGGTTTTTTGTTGAGCAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9539#0 TACTGCTGCTGATCTCGTATTGGGGGTCACTTGTTCTTCTTCTTTTACTGACCTTGTTGA 60
consensus_9539#1 ------------------------------------------------------------
consensus_9539#0 ATTGAACGCAACAATTTTCTTGGTCGGAATCCAGGAGGGAGAGGATTAGAGCAAGGAGCA 120
consensus_9539#1 ------------------------------------------------------------
consensus_9539#0 GCGTCCTGAGGCGTGAAGGACCCACCTTTGCTGCTGTTCTTGGAGCTTCCCTGCCGAAAT 180
consensus_9539#1 ------------------------------------------------------------
consensus_9539#0 GGCCCATAAAGGAGTTCCTAAATTTGGAAGCTGGGAGGATGAAGACCGTGGTGAACACCT 240
consensus_9539#1 ------------------------------------------------------------
consensus_9539#0 CTACACACAGTATTTCGAAAATGCCCGCAAGGGTAAATCTCCAGGGAGGTCTGTTAATCC 300
consensus_9539#1 ------------------------------------------------------------
consensus_9539#0 AAACAATCATCATGGAGATACTGAAGCACTCTCTAAGGCCTCTCCCCTGCACGCTGGATC 360
consensus_9539#1 ------------------------------------------------------------
consensus_9539#0 TGATCCAGCCATGAGAAAGCCCAAGGATGACAGACGCTCAAACCGAGAAGGTGATCTTCG 420
consensus_9539#1 ------------------------------------------------------------
consensus_9539#0 TCAGCACGAAACCACTGTTCGAAAACCATATGCTGGGTCACCTAATCATAGATATGGGGA 480
consensus_9539#1 ------------------------------------------------------------
consensus_9539#0 TCATACCAACTATGACAATGCTGTGAGAAAAACCGGCATAGAGAAGTCACCCGTTCATCC 540
consensus_9539#1 ------------------------------------------------------------
consensus_9539#0 CCGTCACCAGGCAAGAGCTGCAAACAAGGGTGGAGTTTCGTCTCCTTCACGTGACCGTAG 600
consensus_9539#1 --------------------------------------------------------GTAG 4
****
consensus_9539#0 GGGTTCATTGGAAGGAAACCGTGGATCTGCTCCCACTACACCTGGAAGGTCCAAGTTCAG 660
consensus_9539#1 GGGTTCATTGGAAGGAAACCGTGGATCTGCTCCCACTACACCTG-AAGGTCCAAGTTCAG 63
******************************************** ***************
consensus_9539#0 ATCAACTGGCCGTGGTGATGAGACGCCTGATAGAGGATCAGCCGTGCCAAAGTTTGGAGA 720
consensus_9539#1 ATCAACTGGCCGTGGTGATGAGACGCCTGATAGAGGATCAGCCGTGCCAAAGTTTGGAGA 123
************************************************************
consensus_9539#0 ATGGGATGAGAAAGATCCTTCTACAGGTGAAGGTTTCACTGACATATTTGAGAAGGTGAG 780
consensus_9539#1 ATGGGATGAGAAAGATCCTTCTACAGGTGAAGGTTTCACTGACATATTTGAGAAGGTGAG 183
************************************************************
consensus_9539#0 GGAGGAGAAACAGTCTGGTACCGGCAACGCTCCCGTCATGACCAGCGAGGCAGATTATAT 840
consensus_9539#1 GGAGGAGAAACAGTTTGGTACCGGCAACGCTCCCGTCATGACCAGCGAGGCAGATTATAT 243
************** *********************************************
consensus_9539#0 CAAACGCTATCAACAACGCAAATATGAATCCACAGGCTGCTCATGCTTCAGTTGGTTCAA 900
consensus_9539#1 CAAACGCTATCAACAACGCAAATATGAATCCACAGGCTGATAAAGCTTCAGTTGGTTCAA 303
*************************************** * * ****************
consensus_9539#0 GAACTGAACTGACAGCCATCCAGCCAAGTCCTGTCAGCGAGGCCTACATAAATTTGTGTT 960
consensus_9539#1 GAACTGAACTGACAGCCATCCAAAAAAATCCTGTCAGCGAGGCCTACATAAATTTGTGTT 363
********************** ** ********************************
consensus_9539#0 GAAATGTATCATTGTGAGATGAATACCTCCAATCTGTTGTCATTGTTGAGATATTGTTTG 1020
consensus_9539#1 GAAATGTATCATTGTGAGATGAATACCTCCAATCTGTTGTCATTGTTGAGATATTGTTTG 423
************************************************************
consensus_9539#0 GTAGCGAGACATGACATGTATTTACACGAATTTGAAGCTTCTTGTTGAGCATTTTGTGCT 1080
consensus_9539#1 GTAGCGAGACATGACATGTATTTACACGAATTTGAGGTTTTTTGTTGAGCAAAAAAAAAA 483
*********************************** * ** **********
consensus_9539#0 TTTTTTTGTATAATGAGGGATTCGTTTATCTTGGAAGGCATGTGTCTGGATAGAGGATCC 1140
consensus_9539#1 A----------------------------------------------------------- 484
consensus_9539#0 AAATCCTTACGACAAAGGCTAAATTTTAACCAAAAAA 1177
consensus_9539#1 -------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||