These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9541#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 928 fasta sequence [TATGATTTCAGTCACTTTACTTGACCTTCCAGTTGCAAATGTACAACGACACGCTGTGTCACTGTGTGCCTACAGCCGCAACAATGAGAAACCATCTCCACCTCCGGTCACACTTGCCTCTGAACACTATCAAAATTCTACAACTGGCTACAAGGCTACATGTAACAAGAATGTGTTATATACACTGTTTAGACCTGAAATTATCAGGTTCCAAAAGTTTCAACAGCAATTTCTCTAACTTTGCCGAACTTTTCGTCGGCCTCAGAACAAAAGACCTTCCGAAGAAGGAACATGGATCTTTGTCATTTACCGAGCTACCTAAGCACCATCCACCAGGTGTGAATCGTTCAGGTGCTCTCCTCAACAGCTTGGTGTCGATCATATCCAGGACTGGATTGTCATTGGCAAAGGAGTGTGCAAATGGTGCACCGCTGCTTGCGATTGCGTCAAAATGCTCGGTTGTCAGGTTAACAGGTAATGTT-CGTGGAGGGTTGT-CCCATGCCATGAATCGGAGATCATTATTAACGGTAGTGTTCTGATAGTACTTTG-AGTTGCA-GATC-ACCGTG-TGG-AAGTAG-CCCT-CCGAGGATG-CCAAG-AAGTTGGC-AAAATACATGAGTAGAGTGCGAGGAAGGTTGTCCCATCCCAATAAGCAAAATT-CCAGGAATGATCGGCTAAGTATTACCCAT-GAAGAGCCTACAAATATTTTGAAAGCTGAAGGCAAGCTCCTTTTCTCCTTTGTTGTCACAACCTCAGTTTTATTTGAGATCTG-CAATGCTGGATCTACAAT-AATTGGTCTCGCCCTTNGGGTACTCCCTCCAACCAATATTGCTTGTGTGCTCAATAAAATTCAGATCTCTTGGGAGATATGAGAAGATGTGAAGGATGTCATCCTGAGGCATGAGCGGGTAATCGGAGGCGCTGAGATTGATGA] [+] EMBL CB665713 [TATGATTTCAGTCACTTTACTTGACCTTCCAGTTGCAAATGTACAACGACACGCTGTGTCACTGTGTGCCTACAGCCGCAACAATGAGAAACCATCTCCACCTCCGGTCACACTTGCCTCTGAACACTATCAAAATTCTACAACTGGCTACAAGGCTACATGTAACAAGAATGTGTTATATACACTGTTTAGACCTGAAATTATCAGGTTCCAAAAGTTTCAACAGCAATTTCTCTAACTTTGCCGAACTTTTCGTCGGCCTCAGAACAAAAGACCTTCCGAAGAAGGAACATGGATCTTTGTCATTTACCGAGCTACCTAAGCACCATCCACCAGGTGTGAATCGTTCAGGTGCTCTCCTCAACAGCTTGGTGTCGATCATATCCAGGACTGGATTGTCATTGGCAAAGGAGTGTGCAAATGGTGCACCGCTGCTTGCGATTGCGTCAAAATGCTCGGTTGTCAGGTTAACAGGTAATGTT CGTGGAGGGTTGT CCCATGCCATGAATCGGAGATCATTATTAACGGTAGTGTTCTGATAGTACTTTG AGTTGCA GATC ACCGTG TGG AAGTAG CCCT CCGAGGATG CCAAG AAGTTGGC AAAATACATGAGTAGAGTGCGAGGAAGGTTGTCCCATCCCAATAAGCAAAATT CCAGGAATGATCGGCTAAGTATTACCCAT GAAGAGCCTACAAATATTTTGAAAGCTGAAGGCAAGCTCCTTTTCTCCTTTGTTGTCACAACCTCAGTTTTATTTGAGATCTG CAATGCTGGATCTACAAT AATTGGTCTCGCCCT ] [-] EMBL CB663061 [ ATGATTTCAGTCACTTTACTTGACCTTCCAGTTGCAAATGTACAACGACACGCTGTGTCACTGTGTGCCTACAGCCGCAACAATGAGAAACCATCTCCACCTCCGGTCACACTTGCCTCTGAACACTATCAAAATTCTACAACTGGCTACAAGGCTACATGTAACAAGAATGTGTTATATACACTGTTTAGACCTGAAATTATCAGGTTCCAAAAGTTTCAACAGCAATTTCTCTAACTTTGCCGAACTTTTCGTCGGCCTCAGAACAAAAGACCTTCCGAAGAAGGAACATGGATCTTTGTCATTTACCGAGCTACCTAAGCACCATCCACCAGGTGTGAATCGTTCAGGTGCTCTCCTCAACAGCTTGGTGTCGATCATATCCAGGACTGGATTGTCATTGGCAAAGGAGTGTGCAAATGGTGCACCGCTGCTTGCGATTGCGTCAAAATGCTCGGTTGTCAGGTTAACAGGTAATGTT CGTGGAGGGTTGT CCCATGCCATGAATCGGAGATCATTATTAACGGTAGTGTTCTGATAGTACTTTG AGTTGCA GATC ACCGTG TGG AAGTAG CCCT CCGAGGATG CCAAG AAGTTGGC AAAATACATGAGTAGAGTGCGAGGAAGGTTGTCCCATCCCAATAAGCAAAATT CCAGGAATGATCGGCTAAGTATTACCCAT GAAGAGCCTACAAATATTTTGAAAGCTGAAGGCAAGCTCCTTTTCTCCTTTGTTGTCACAACCTCAGTTTTATTTGAGATCTG ] [+] EMBL CB663062 [gATGATTTCAGTCACTTTACTTGACCTTCCAGTTGCAAATGTACAACGACACGCTGTGTCACTGTGTGCCTACAGCCGCAACAATGAGAAACCATCTCCACCTCCGGTCACACTTGCCTCTGAACACTATCAAAATTCTACAACTGGCTACAAGGCTACATGTAACAAGAATGTGTTATATACACTGTTTAAACCTGAAATTATCAGGTTCCAAAAGTTTCAACAGCAATTTCTCTAACTTTGCCGAACTTTTCGTCGGCCTCAGAACAAAAGACCTTCCGAAGAAGGAACATGGATCTTTGTCATTTACCGAGCTACCTAAGCACCATCCACCAGGTGTGAATCGTTCAGGTGCTCTCCTCAACAGCTTGGTGTCGATCATATCCAGGACTGGATTGTCATTGGCAAAGGAGTGTGCAAATGGTGCACCGCTGCTTGCGATTGCGTCAAAATGCTCGGTTGTCAGGTTAACAGGTAATGTT CGTGGAGGGTTGT CCCATGCCATGAATCGGAGATCATTATTAACGGTAGTGTTCTGATAGTACTTTG AGTTGCA GATC ACCGTG TGG AAGTAG CCCT CCGAGGATG CCAAG AAGTTGGC AAAATACATGAGTAGAGTGCGAGGAAGGTTGTCCCATCCCAATAAGCAAAATT CCAGGAATGATCGGCTAAGTATTACCCAT GAAGAGCCTACAAATATTTTGAAAGCTGAAGGCAAGCTCCTTTTCTCCTTTGTTGTCACAACCTCAGTTTTATTTGAGATC ] [-] EMBL AU092445 [ tttTTCTACAACTGGCTACAAGGCTACATGTAACAAGAATGTGTTATATACACTGTTTAGACCTGAAATTATCAGGTTCCAAAAGTTTCAACAGCAATTTCTCTAACTTTGCCGAACTTTTCGTCGGCCTCAGAACAAAAGACCTTCCGAAGAAGGAACATGGATCTTTGTCATTTACCGAGCTACCTAAGCACCATCCACCAGGTGTGAATCGTTCAGGTGCTCTCCTCAACAGCTTGGTGTCGATCATATCCAGGACTGGATTGTCATTGGCAAAGGAGTGTGCAAATGGTGCACCGCTGCTTGCGATTGCGTCAAAATGCTCGGTTGTCAGGTTAACAGGTAATGTT CGTGGAGGGTTGT CCCATGCCATGAATCGGAGATCATTATTAACGGTAGTGTTCTGATAGTACTTTG AGTTGCA GATC ACCGTG TGG AAGTAG CCCT CCGAGGATG CCAAG AAGTTGGC AAAATACATGAGTAGAGTGCGAGGAAGGTTGTCCCATCCCAATAAGCAAAATT CCAGGAATGATCGGCTAAGTATTACCCATGGAAGAGCCTACAAATATTTTGAAAGCTGAAGGCAAGCTCCTTTTCTCCTTTGNTGTCACAACCTCAGTTTTATTTGAGATCTGCCAATGCTGGATCTACAATAAATGGGTCTCGCCCTTNGGGTACTCCCTCCAACCAA ] [+] EMBL BE229150 [ GCTACAAGGCTACATGTAACAAGAATGTGTTATATACACTGTTTAGACCTGAAATTATCAGGTTCCAAAAGTTTCAACAGCAATTTCTCTAACTTTGCCGAACTTTTCGTCGGCCTCAGAACAAAAGACCTTCCGAAGAAGGAACATGGATCTTTGTCATTTACCGAGCTACCTAAGCACCATCCACCAGGTGTGAATCGTTCAGGTGCTCTCCTCAACAGCTTGGTGTCGATCATATCCAGGACTGGATTGTCATTGGCAAAGGAGTGTGCAAATGGTGCACCGCTGCTTGCGATTGCGTCAAAATGCTCGGTTGTCAGGTTAACAGGTAATGTTCCGTGGAAGGTTGTCCCCATGCCATGAATCCGAGATCATTATTAACGGTAGTGTTCTGATAGTACTTTGAATTTGCA GATC ACCGTGTTGGAAATTAC CCCC CCGAAGANG CCCAGAAATTTGGC CAAATACATGATTANAATGCGAAGAAGGTTGTCCCNCCCCNATAACC AATC CCA GAANGATCNGCTAATTA TACCCAT GAA AACCTNC AATA TTTGAAA CTGAAGca ] [-] EMBL C27018 [ gcc CCCATGCCATGAATCGGAGATCATTATTAACGGTAGTGGTCTGATAGTACTTTG AGTTGCAGGATCNNCCTTG TGG AAGTAGCCCCTCCCGAGGATGCCCAAG AAGTTGGCAAAAATACATGAGTAGAGTGCGAGGAAGGTTGTCCCATCCCAATAAGCAAAATTCCCAGGAATGATCGGCTAAGTATTACCCAT GAAGAGCCTACAAATATTTTGAAAGCTGAAGGCAAGCTCCTTTTCTCCTTTGTTGTCACAACCTCAGTTTTATTTGAGATCTG CAATGCTGGATCTACAAT AATTGGTCTCGCCCTT TGGTACTCCCTCCAACCAATATTGCTTGTGTGCTCAATAAAATTCAGATCTCTTGGGAGATATGAGAAGATGTGAAGGATGTCATCCTGAGGCATGAGCGGGTAATCGGAGGCGCTGAGATTGATGA] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||