cluster # 9544

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Oryza sativa
cluster # 9544 cluster # 9544 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9544#0 length = 1230 sequences # 4

consensus_9544#1 length = 816 sequences # 1
consensus_9544#2 length = 322 sequences # 1

consensusID : consensus_9544#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1230
fasta sequence

                              [AGCTAAAGCTGTGCCGTTCTCTTCCAGAAGCTTCCGCCGCCGCCGCCAACCGAGCCGCTCCGATCCTCCCCCCCTCGACTCGGCCGCGGGCGTACGTAGAGGGGGACCGACCAGATGGTGGCGGCGTCGCGCCTCCTCGCGCGGGCGTCGAGGCAATGCGTCGCCGCGGTGGCGGCGTCGGCCGCGAGGCGGCGGCGGTGCCCGGCGGCGGCGCTGTCGCTGCCCGTGGTGACCGCGGCGAAGGCGGCGGCTGCGGAGCCGTGGCTCGGGGTCCCATATATGTTGAATCAGCCCTTGAGATACTCAACCACCATTTTTCAACG-TTTTGGATTTTCATCCACTTCCCCGGAACTAAGTGATAAGGAGGAAAACCAACGCAAGGACCAGGAGAATTCCACAAATGTGTCAAATGAAGGCACTG-AAGACGTTGATTTGTCAAAGGAGGATCTGGTGCAGCTAGTTCTTGAGAAGGATGGATTGTTGAAGTCAAAAGATGAAGAAATCAATGATATGAAGGACAAGGTTTTGCGAAGTTATGCAGAAATGGAAAATGTCATAGCTAGGACAAAGCGTGAATCTGAGAACTCAAAAAAGTATGCTGTGCAGAATTTCTCCAAGAGCCTGTTAGATGTCGCTGACAATTTGACTAGAGCATCATCTGTTGTTAAGGAAAGCTTCTCAAAAATAGATACATCTAAAGATTCTACTGGAGCTGTTCCACTACTAAAAACACTGTTGGAGGGTGTGGACATGACAGATAAACAACTTGGTGAGGTTTTTAAGAAGTTTGGAGTTGAAAAGTTTGATCCTTTGAATGAGAAATTTGATCCTAGTAGACATTGTGCAATCTTTCAAATTCCTGACCCCTCGAAACCTTCAGGAACTGTAGCTTCTGTTGTAAAGGTGGGCTACATGCTACATGACCGTGTTCTGCGCCCTGCAGAAGTCGGTGTTACAGAGGGAGGCCCCACGACCACGGAGGAGGCAGCAGAAAATTCTGAGCAGAAATCGAGTGAGGTTTAAGTTTGCTGCTGTTACTTCACTTAACGAGATAGTTGGAACGATGTCCCATTTTGGTCCTGGAGATGAGGATGAGCCATGTAAGATAAGAGGAGCGTTATTTTTTGTTCTAACCAGCACAAGCTATTGCACTGTAAGCAATGACAATTGTGTTTTTGCAAGTGATGCTGCAGCAAAGTGTTTTTTTTTAACTTGTAAAAAAAAAAAAAA]

[+] EMBL AU093113             [AGCTAAAGCTGTGCCGTTCTCTTCCAGAAGCTTCCGCCGCCGCCGCCAACCGAGCCGCTCCGATCCTCCCCCCCTCGACTCGGCCGCGGGCGTACGTAGAGGGGGACCGACCAGATGGTGGCGGCGTCGCGCCTCCTCGCGCGGGCGTCGAGGCAATGCGTCGCCGCGGTGGCGGCGTCGGCCGCGAGGCGGCGGCGGTGCCCGGCGGCGGCGCTGTCGCTGCCCGTGGTGACCGCGGCGAANGCGGCGGCTGCGGA CCGTGGCTCGGGGTCCCATATATGTTGAATCAGCCCTTGAGATACTCAACCACCATTTTTCAACGTTTTTGGATTTTCATNCACTTTCCCGGAACTAAGTGATTANGAGGAAAACCAACGCAAGGACCAGGAGAATTNCACAAATGTGTCAAATGAAGGCACTGAAAGACGTTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AK110658             [                                 CCGCCGCCGCCGCCAACCGAGCCGCTCCGATCCTCCCCCCCTCGACTCGGCCGCGGGCGTACGTAGAGGGGGACCGACCAGATGGTGGCGGCGTCGCGCCTCCTCGCGCGGGCGTCGAGGCAATGCGTCGCCGCGGTGGCGGCGTCGGCCGCGAGGCGGCGGCGGTGCCCGGCGGCGGCGCTGTCGCTGCCCGTGGTGACCGCGGCGAAGGCGGCGGCTGCGGAGCCGTGGCTCGGGGTCCCATATATGTTGAATCAGCCCTTGAGATACTCAACCACCATTTTTCAACG TTTTGGATTTTCATCCACTTCCCCGGAACTAAGTGATAAGGAGGAAAACCAACGCAAGGACCAGGAGAATTCCACAAATGTGTCAAATGAAGGCACTG AAGACGTTGATTTGTCAAAGGAGGATCTGGTGCAGCTAGTTCTTGAGAAGGATGGATTGTTGAAGTCAAAAGATGAAGAAATCAATGATATGAAGGACAAGGTTTTGCGAAGTTATGCAGAAATGGAAAATGTCATAGCTAGGACAAAGCGTGAATCTGAGAACTCAAAAAAGTATGCTGTGCAGAATTTCTCCAAGAGCCTGTTAGATGTCGCTGACAATTTGACTAGAGCATCATCTGTTGTTAAGGAAAGCTTCTCAAAAATAGATACATCTAAAGATTCTACTGGAGCTGTTCCACTACTAAAAACACTGTTGGAGGGTGTGGACATGACAGATAAACAACTTGGTGAGGTTTTTAAGAAGTTTGGAGTTGAAAAGTTTGATCCTTTGAATGAGAAATTTGATCCTAGTAGACATTGTGCAATCTTTCAAATTCCTGACCCCTCGAAACCTTCAGGAACTGTAGCTTCTGTTGTAAAGGTGGGCTACATGCTACATGACCGTGTTCTGCGCCCTGCAGAAGTCGGTGTTACAGAGGGAGGCCCCACGACCACGGAGGAGGCAGCAGAAAATTCTGAGCAGAAATCGAGTGAGGTTTAAGTTTGCTGCTGTTACTTCACTTAACGAGATAGTTGGAACGATGTCCCATTTTGGTCCTGGAGATGAGGATGAGCCATGTAAGATAAGAGGAGCGTTATTTTTTGTTCTAACCAGCACAAGCTATTGCACTGTAAGCAATGACAATT                                                             ]
[+] EMBL CB657515             [                                   GCCGCCGCCGCCAACCGAGCCGCTCCGATCCCCCCCCCCTCGACTCGGCCGCGGGCGTACGTAGAGGGGGACCGACCAGATGGTGGCGGCGTCGCGCCTCCTCGCGCGGGCGTCGAGGCAATGCGTCGCCGCGGTGGCGGCGTCGGCCGCGAGGCGGCGGCGGTGCCCGGCGGCGGCGCTGTCGCTGCCCGTGGTGACCGCGGCGAAGGCGGCGGCTGCGGAGCCGTGGCTCGGGGTCCCATATATGTTGAATCAGCCCTTGAGATACTCAACCACCATTTTTCAACG TTTTGGATTTTCATCCACTTCCCCGGAACTAAGTGATAAGGAGGAAAACCAACGCAAGGACCAGGAGAATTCCACAAATGTGTCAAATGAAGGCACTG AAGACGTTGATTTGTCAAAGGAGGATCTGGTGCAGCTAGTTCTTGAGAAGGATGGATTGTTGAAGTCAAAAGATGAAGAAATCAATGATATGAAGGACAAGGTTTTGCGAAGTTATGCAGAAATGGAAAATGTCATAGCTAGGACAAAGCGTGAATCTGAGAACTCAAAAAAGTATGCTGTGCAGAATTTCTCCAAGAGCCTGTTAGATGTCGCTGACAATTTGACTAGAGCATCATCTGTTGTTAAGGAAAGCTTCTCAAAAATAGATACATCTAAAGATTCTACTGGAGCTGTTCCACTACTAAAAACACTGTTGGAGGGTGTGGACATGACAGATAAACAACTTGGTGAGGTTTTTAAGAAGTTTGGAGTTGAAAAGTTTGATCCTTTGAATGAGAAATTTGATCCTAGTAGACATTGTGCAATCTTTCAAA                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CA762645             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AAAGCGTGAATCTGAGAACTCAAAAAAGTATGCTGTGCAGAATTTCTCCAAGAGCCTGTTAGATGTCGCTGACAATTTGACTAGAGCATCATCTGTTGTTAAGGAAAGCTTCTCAAAAATAGATACATCTAAAGATTCTACTGGAGCTGTTCCACCACTAAAAACACTGTTGGAGGGTGTGGACATGACAGATAAACAACTTGATGAGGTTTTTAAGAAGTTTGGAGTTGAAAAGTTTGATCCTTTGAATGAGAAATTTGATCCTAGTAGACATTGTGCAATCTTTCAAATTCCTGACCCCTTGAAACCTTCAGGAACTGTAGCTTCTGTTGTAAAGGTGGGCTACATGCTACATGACCGTGTTTTGCGCCCTGCAGAAGTCGGTGTTACAGAGGGAGGCCCCACGACCACGGAGGAGGCAGCAGAAAGTTTTGAGCAGAAATCGAGTGAGGTTTAAGTTTGCTGCTGTTACTTCACTTAACGAGATAGTTGGAACGATGTCCCATTTTGGTCCTGGAGATGAGGATGAGCCATGTAAGATAAGAGGAGCGTTATTTTTTGTTCTAACCAGCACAAGCTATTGCACTGTAAGCAATGACAATTGTGTTTTTGCAAGTGATGCTGCAGCAAAGTGTTTTTTTTTAACTTGTAAAAAAAAAAAAAA]




>consensus_9544#0
AGCTAAAGCTGTGCCGTTCTCTTCCAGAAGCTTCCGCCGCCGCCGCCAACCGAGCCGCTC
CGATCCTCCCCCCCTCGACTCGGCCGCGGGCGTACGTAGAGGGGGACCGACCAGATGGTG
GCGGCGTCGCGCCTCCTCGCGCGGGCGTCGAGGCAATGCGTCGCCGCGGTGGCGGCGTCG
GCCGCGAGGCGGCGGCGGTGCCCGGCGGCGGCGCTGTCGCTGCCCGTGGTGACCGCGGCG
AAGGCGGCGGCTGCGGAGCCGTGGCTCGGGGTCCCATATATGTTGAATCAGCCCTTGAGA
TACTCAACCACCATTTTTCAACGTTTTGGATTTTCATCCACTTCCCCGGAACTAAGTGAT
AAGGAGGAAAACCAACGCAAGGACCAGGAGAATTCCACAAATGTGTCAAATGAAGGCACT
GAAGACGTTGATTTGTCAAAGGAGGATCTGGTGCAGCTAGTTCTTGAGAAGGATGGATTG
TTGAAGTCAAAAGATGAAGAAATCAATGATATGAAGGACAAGGTTTTGCGAAGTTATGCA
GAAATGGAAAATGTCATAGCTAGGACAAAGCGTGAATCTGAGAACTCAAAAAAGTATGCT
GTGCAGAATTTCTCCAAGAGCCTGTTAGATGTCGCTGACAATTTGACTAGAGCATCATCT
GTTGTTAAGGAAAGCTTCTCAAAAATAGATACATCTAAAGATTCTACTGGAGCTGTTCCA
CTACTAAAAACACTGTTGGAGGGTGTGGACATGACAGATAAACAACTTGGTGAGGTTTTT
AAGAAGTTTGGAGTTGAAAAGTTTGATCCTTTGAATGAGAAATTTGATCCTAGTAGACAT
TGTGCAATCTTTCAAATTCCTGACCCCTCGAAACCTTCAGGAACTGTAGCTTCTGTTGTA
AAGGTGGGCTACATGCTACATGACCGTGTTCTGCGCCCTGCAGAAGTCGGTGTTACAGAG
GGAGGCCCCACGACCACGGAGGAGGCAGCAGAAAATTCTGAGCAGAAATCGAGTGAGGTT
TAAGTTTGCTGCTGTTACTTCACTTAACGAGATAGTTGGAACGATGTCCCATTTTGGTCC
TGGAGATGAGGATGAGCCATGTAAGATAAGAGGAGCGTTATTTTTTGTTCTAACCAGCAC
AAGCTATTGCACTGTAAGCAATGACAATTGTGTTTTTGCAAGTGATGCTGCAGCAAAGTG
TTTTTTTTTAACTTGTAAAAAAAAAAAAAA

consensusID : consensus_9544#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 816
fasta sequence

                              [GTTGAAGTCAAAAGATGAAGAAATCAATGTTATGAAGGCCAAGGTTTTGCGAAGTTATGCAGAAATGGAAAATGTCATAGGTAGGACAAAGCGTGAATCTGAGAACTCAAAAAAGTATGCTGTGCAGAATTTCTCCAAGAGCCTGTTAGATGTCGCTGACAATTTGACTAGAGCATCATCTGTTGTTAAGGAAAGCTTCTCAAAAATAGATACATCTAAAGATTCTACTGGAGCTGTTCCACTACTAAAAACACTGTTGGAGGGTGTGGACATGACAGATAAACAACTTGGTGAGGTTTTTAAGAAGTTTGGAGTTGAAAAGTTTGATCCTTTGAATGAGAAATTTGATCCTAGTAGACATTGTGCAATCTTTCAAATTCCTGACCCCTCGAAACCTTCAGGAACTGTAGCTTCTGTTGTAAAGGTGGGGTCCATGCTACATGACCGTGTTTTGCGCCCTGCAGAAGTCGGTGTTACAGAGGGAGGCCCCACGGCCACGGAGGAGGCAGCAGAAAATTGTGAGCAGAAATCGAGTGAGGTTTAAGTTTGCTGCTGTTACTTCACTTAACGAGATAGTTGGACCGATGTCCCATTTTGGTCCTGGAGATGAGGATGAGCCATGTCAGATAAGAGGAGCGTTATTTTTTGTTGTAACCAGCCCAAGCTATTGCACTGTAAGCAATGACAATTGTGTTTTTGCAAGTGATGCTGCAGCAAAGTGTTTTTTTTTAACTTGTATATGCAAGGTGAGTATTTGTATTTCGATCGTCATGGCAGGTACAGCAGAGCATGCTTGCTTAATCAAACAAAAAAGGG]

[-] EMBL CB657516             [GTTGAAGTCAAAAGATGAAGAAATCAATGTTATGAAGGCCAAGGTTTTGCGAAGTTATGCAGAAATGGAAAATGTCATAGGTAGGACAAAGCGTGAATCTGAGAACTCAAAAAAGTATGCTGTGCAGAATTTCTCCAAGAGCCTGTTAGATGTCGCTGACAATTTGACTAGAGCATCATCTGTTGTTAAGGAAAGCTTCTCAAAAATAGATACATCTAAAGATTCTACTGGAGCTGTTCCACTACTAAAAACACTGTTGGAGGGTGTGGACATGACAGATAAACAACTTGGTGAGGTTTTTAAGAAGTTTGGAGTTGAAAAGTTTGATCCTTTGAATGAGAAATTTGATCCTAGTAGACATTGTGCAATCTTTCAAATTCCTGACCCCTCGAAACCTTCAGGAACTGTAGCTTCTGTTGTAAAGGTGGGGTCCATGCTACATGACCGTGTTTTGCGCCCTGCAGAAGTCGGTGTTACAGAGGGAGGCCCCACGGCCACGGAGGAGGCAGCAGAAAATTGTGAGCAGAAATCGAGTGAGGTTTAAGTTTGCTGCTGTTACTTCACTTAACGAGATAGTTGGACCGATGTCCCATTTTGGTCCTGGAGATGAGGATGAGCCATGTCAGATAAGAGGAGCGTTATTTTTTGTTGTAACCAGCCCAAGCTATTGCACTGTAAGCAATGACAATTGTGTTTTTGCAAGTGATGCTGCAGCAAAGTGTTTTTTTTTAACTTGTATATGCAAGGTGAGTATTTGTATTTCGATCGTCATGGCAGGTACAGCAGAGCATGCTTGCTTAATCAAACAAAAAAGGG]




>consensus_9544#1
GTTGAAGTCAAAAGATGAAGAAATCAATGTTATGAAGGCCAAGGTTTTGCGAAGTTATGC
AGAAATGGAAAATGTCATAGGTAGGACAAAGCGTGAATCTGAGAACTCAAAAAAGTATGC
TGTGCAGAATTTCTCCAAGAGCCTGTTAGATGTCGCTGACAATTTGACTAGAGCATCATC
TGTTGTTAAGGAAAGCTTCTCAAAAATAGATACATCTAAAGATTCTACTGGAGCTGTTCC
ACTACTAAAAACACTGTTGGAGGGTGTGGACATGACAGATAAACAACTTGGTGAGGTTTT
TAAGAAGTTTGGAGTTGAAAAGTTTGATCCTTTGAATGAGAAATTTGATCCTAGTAGACA
TTGTGCAATCTTTCAAATTCCTGACCCCTCGAAACCTTCAGGAACTGTAGCTTCTGTTGT
AAAGGTGGGGTCCATGCTACATGACCGTGTTTTGCGCCCTGCAGAAGTCGGTGTTACAGA
GGGAGGCCCCACGGCCACGGAGGAGGCAGCAGAAAATTGTGAGCAGAAATCGAGTGAGGT
TTAAGTTTGCTGCTGTTACTTCACTTAACGAGATAGTTGGACCGATGTCCCATTTTGGTC
CTGGAGATGAGGATGAGCCATGTCAGATAAGAGGAGCGTTATTTTTTGTTGTAACCAGCC
CAAGCTATTGCACTGTAAGCAATGACAATTGTGTTTTTGCAAGTGATGCTGCAGCAAAGT
GTTTTTTTTTAACTTGTATATGCAAGGTGAGTATTTGTATTTCGATCGTCATGGCAGGTA
CAGCAGAGCATGCTTGCTTAATCAAACAAAAAAGGG

consensusID : consensus_9544#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 322
fasta sequence

                              [AGCTAAAGCTGTNCCGTTCTCTTCCAGAAGCTTCCGCCGCCGCCGCCAACCGAGCCGCTCCGATCCTCCCCCCCTCGACTCGGCCGCGGGCGTACGTAGAGGGGGACCGACCANATGGTGGCGGCGTCGGCCTCCTCGCGCGGGCNTCGAGGCAATACNTCGCCGCGGTGGCGGGTTCGGCCGAAGGGGCGGCGGTGCCCGTNGGCGGCGCTGTCGNTGCCCGTGGTGACCGCGGCGAAGNCGGCGGCTTCGGANCGTGGCTCGGGGTCCCATATATATTGAATNAGCCTTGAGATACTAACCAACATTTTTAAAGATTTGG]

[+] EMBL C28444               [AGCTAAAGCTGTNCCGTTCTCTTCCAGAAGCTTCCGCCGCCGCCGCCAACCGAGCCGCTCCGATCCTCCCCCCCTCGACTCGGCCGCGGGCGTACGTAGAGGGGGACCGACCANATGGTGGCGGCGTCGGCCTCCTCGCGCGGGCNTCGAGGCAATACNTCGCCGCGGTGGCGGGTTCGGCCGAAGGGGCGGCGGTGCCCGTNGGCGGCGCTGTCGNTGCCCGTGGTGACCGCGGCGAAGNCGGCGGCTTCGGANCGTGGCTCGGGGTCCCATATATATTGAATNAGCCTTGAGATACTAACCAACATTTTTAAAGATTTGG]




>consensus_9544#2
AGCTAAAGCTGTNCCGTTCTCTTCCAGAAGCTTCCGCCGCCGCCGCCAACCGAGCCGCTC
CGATCCTCCCCCCCTCGACTCGGCCGCGGGCGTACGTAGAGGGGGACCGACCANATGGTG
GCGGCGTCGGCCTCCTCGCGCGGGCNTCGAGGCAATACNTCGCCGCGGTGGCGGGTTCGG
CCGAAGGGGCGGCGGTGCCCGTNGGCGGCGCTGTCGNTGCCCGTGGTGACCGCGGCGAAG
NCGGCGGCTTCGGANCGTGGCTCGGGGTCCCATATATATTGAATNAGCCTTGAGATACTA
ACCAACATTTTTAAAGATTTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9544#0      ------------------------------------------------------------
consensus_9544#2      ------------------------------------------------------------
consensus_9544#1      GTTGAAGTCAAAAGATGAAGAAATCAATGTTATGAAGGCCAAGGTTTTGCGAAGTTATGC 60
                                                                                  

consensus_9544#0      ------------------------------------------------------------
consensus_9544#2      ------------------------------------------------------------
consensus_9544#1      AGAAATGGAAAATGTCATAGGTAGGACAAAGCGTGAATCTGAGAACTCAAAAAAGTATGC 120
                                                                                  

consensus_9544#0      ------------------------------------------------------------
consensus_9544#2      ------------------------------------------------------------
consensus_9544#1      TGTGCAGAATTTCTCCAAGAGCCTGTTAGATGTCGCTGACAATTTGACTAGAGCATCATC 180
                                                                                  

consensus_9544#0      ------------------------------------------------------------
consensus_9544#2      ------------------------------------------------------------
consensus_9544#1      TGTTGTTAAGGAAAGCTTCTCAAAAATAGATACATCTAAAGATTCTACTGGAGCTGTTCC 240
                                                                                  

consensus_9544#0      ------------------------------------------------------------
consensus_9544#2      ------------------------------------------------------------
consensus_9544#1      ACTACTAAAAACACTGTTGGAGGGTGTGGACATGACAGATAAACAACTTGGTGAGGTTTT 300
                                                                                  

consensus_9544#0      ------------AGCTAAAGCTGTGCCGTTCTCTTCCAGAAGCTTCCGCCGCCGCCGCCA 48
consensus_9544#2      ------------AGCTAAAGCTGTNCCGTTCTCTTCCAGAAGCTTCCGCCGCCGCCGCCA 48
consensus_9544#1      TAAGAAGTTTGGAGTTGAAAA-GTTTGATCCTTTGAATGAGAAATTTGATCCTAGTAGAC 359
                                  ** * **   **    * ** *    **    *  *   *        

consensus_9544#0      ACCGAGC---CGCTCCGATCCTCCCCCCCTCGACTCGGCCGCGGGC-GTA--------CG 96
consensus_9544#2      ACCGAGC---CGCTCCGATCCTCCCCCCCTCGACTCGGCCGCGGGC-GTA--------CG 96
consensus_9544#1      ATTGTGCAATCTTTCAAATTCCTGACCCCTCGAAACCTTCAGGAACTGTAGCTTCTGTTG 419
                      *  * **   *  **  ** *    ********  *   *  *  * ***         *

consensus_9544#0      TAGAGG-GGGACCGA--CCAGATGGTGGCGGCGTCGCGCCTCCTCGCGCGGGCGT--CGA 151
consensus_9544#2      TAGAGG-GGGACCGA--CCANATGGTGGCGGCGTCG-GCCTCCTCGCGCGGGCNT--CGA 150
consensus_9544#1      TAAAGGTGGGGTCCATGCTACATGACCGTGTTTTGCGCCCTGCAGAAGTCGGTGTTACAG 479
                      ** *** ***  * *  * * ***   * *   *    *** *    *  **  *  *  

consensus_9544#0      GGCAATGCGTCGCCGCGGTGGCGGCGTCGGCCGCGAGGCGGCGGCGGTGCCCGGCGGCGG 211
consensus_9544#2      GGCAATACNTCGCCGCGGTGGCGGGTTCGGCCG--AAGGGGCGGCGGTGCCCGTNGGCGG 208
consensus_9544#1      AGGGAGGCCCCACGGCCACGGAGGAGGCAGCAGAAAATTGTGAGCAGAAATCG--AGTGA 537
                       *  *  *  * * **   ** **   * ** *  *   *   ** *    **   * * 

consensus_9544#0      CGCTGTCGCTGCCCGTGGTGACCGCGGCGAAGGCGGCGGCTGCGGAGCCGTGGCTCGG-- 269
consensus_9544#2      CGCTGTCGNTGCCCGTGGTGACCGCGGCGAAGNCGGCGGCTTCGGANC-GTGGCTCGG-- 265
consensus_9544#1      GGTTTAAGTTTGCTGCTGTTACTTCACTTAACGAGATAGTT--GGACCGATGTCCCATTT 595
                       * *   * *  * *  ** **  *    **   *   * *  *** *  ** * *    

consensus_9544#0      -GGTCCCATATATGTTGAATCAGCCCT-TGAGATACTC-AACCACCATTTTTCAACGT-- 324
consensus_9544#2      -GGTCCCATATATATTGAATNAGCC-T-TGAGATACT--AACCAACATTTTTAAAGAT-- 318
consensus_9544#1      TGGTCCTGGAGATGA-GGATGAGCCATGTCAGATAAGAGGAGCGTTATTTTTTGTTGTAA 654
                       *****   * **   * ** **** * * *****     * *   ******     *  

consensus_9544#0      TTTGGATTTTCATCCACTTCCCCGGAACTAAGTGATAAGGAGGAAAACCAACGCAAGGAC 384
consensus_9544#2      TTGG-------------------------------------------------------- 322
consensus_9544#1      CCAGCCCAAGCTATTGCACTGTAAGCAATGACAATTGTGTTTTTGCAAGTGATGCTGCAG 714
                         *                                                        

consensus_9544#0      CAGGAGAATTCCACAAATGTGTCAAATGAAGGCACTGAAGACGTTGATTTGTCAAAGGAG 444
consensus_9544#2      ------------------------------------------------------------
consensus_9544#1      CAAAGTGTTTTTTTTTAACTTGTATATGCAAGGTGAGTATTTGTATTTCGATCGTCATGG 774
                                                                                  

consensus_9544#0      GATCTGGTGCAGCTAGTTCTTGAGAAGGATGGATTGTTGAAGTCAAAAGATGAAGAAATC 504
consensus_9544#2      ------------------------------------------------------------
consensus_9544#1      CAGGTACAGCAGAGCATGCTTGCTTAATCAAACAAAAAAGGG------------------ 816
                                                                                  

consensus_9544#0      AATGATATGAAGGACAAGGTTTTGCGAAGTTATGCAGAAATGGAAAATGTCATAGCTAGG 564
consensus_9544#2      ------------------------------------------------------------
consensus_9544#1      ------------------------------------------------------------
                                                                                  

consensus_9544#0      ACAAAGCGTGAATCTGAGAACTCAAAAAAGTATGCTGTGCAGAATTTCTCCAAGAGCCTG 624
consensus_9544#2      ------------------------------------------------------------
consensus_9544#1      ------------------------------------------------------------
                                                                                  

consensus_9544#0      TTAGATGTCGCTGACAATTTGACTAGAGCATCATCTGTTGTTAAGGAAAGCTTCTCAAAA 684
consensus_9544#2      ------------------------------------------------------------
consensus_9544#1      ------------------------------------------------------------
                                                                                  

consensus_9544#0      ATAGATACATCTAAAGATTCTACTGGAGCTGTTCCACTACTAAAAACACTGTTGGAGGGT 744
consensus_9544#2      ------------------------------------------------------------
consensus_9544#1      ------------------------------------------------------------
                                                                                  

consensus_9544#0      GTGGACATGACAGATAAACAACTTGGTGAGGTTTTTAAGAAGTTTGGAGTTGAAAAGTTT 804
consensus_9544#2      ------------------------------------------------------------
consensus_9544#1      ------------------------------------------------------------
                                                                                  

consensus_9544#0      GATCCTTTGAATGAGAAATTTGATCCTAGTAGACATTGTGCAATCTTTCAAATTCCTGAC 864
consensus_9544#2      ------------------------------------------------------------
consensus_9544#1      ------------------------------------------------------------
                                                                                  

consensus_9544#0      CCCTCGAAACCTTCAGGAACTGTAGCTTCTGTTGTAAAGGTGGGCTACATGCTACATGAC 924
consensus_9544#2      ------------------------------------------------------------
consensus_9544#1      ------------------------------------------------------------
                                                                                  

consensus_9544#0      CGTGTTCTGCGCCCTGCAGAAGTCGGTGTTACAGAGGGAGGCCCCACGACCACGGAGGAG 984
consensus_9544#2      ------------------------------------------------------------
consensus_9544#1      ------------------------------------------------------------
                                                                                  

consensus_9544#0      GCAGCAGAAAATTCTGAGCAGAAATCGAGTGAGGTTTAAGTTTGCTGCTGTTACTTCACT 1044
consensus_9544#2      ------------------------------------------------------------
consensus_9544#1      ------------------------------------------------------------
                                                                                  

consensus_9544#0      TAACGAGATAGTTGGAACGATGTCCCATTTTGGTCCTGGAGATGAGGATGAGCCATGTAA 1104
consensus_9544#2      ------------------------------------------------------------
consensus_9544#1      ------------------------------------------------------------
                                                                                  

consensus_9544#0      GATAAGAGGAGCGTTATTTTTTGTTCTAACCAGCACAAGCTATTGCACTGTAAGCAATGA 1164
consensus_9544#2      ------------------------------------------------------------
consensus_9544#1      ------------------------------------------------------------
                                                                                  

consensus_9544#0      CAATTGTGTTTTTGCAAGTGATGCTGCAGCAAAGTGTTTTTTTTTAACTTGTAAAAAAAA 1224
consensus_9544#2      ------------------------------------------------------------
consensus_9544#1      ------------------------------------------------------------
                                                                                  

consensus_9544#0      AAAAAA 1230
consensus_9544#2      ------
consensus_9544#1      ------