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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9554#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1056 fasta sequence
[CTTCCCCGCCGGCCGCCGCTCCCCTCCTCGCCACCGCCGCCATGCCTTTCCACTTCCAATTCCCATGGCTCCCCAACAACCCCACCTCCTCCTCCTCCTCCCCAACGAAACCACCTAGCCCTGCAATCCCCAACCCCTTCCTCCCCATCCAGGCCGGCCTCGCCTCCTTCCTCTCCTCCCTCCCGCTCCCACGCGCGGCCTTCCCGCCGCCGCCCTGGGCTCGCATCTCCTCCGCCTCAGCCTCCGCGGCCTCGGCCTCGGCTCTCCCCGTGGCGGAGATCGAGGAGCGGCTCGCGGGGGTCCCCGTGTACGCGCTCGCCAACTCCTCGCAGGAGTTCGTGCTCGTGTCGTCCGCCCGCGGTGGGGGTGGGGGTGGGGGAGGTGCCCGGGCGGCGGTGCCGCCGCCGGCGCTCGGGCTCCTGTGCTTCCGGAGGGAGGACGCCGACGCCCTCCTGGCGCAGATGGACGGGGACATGGCGGCTGGCTCCACCGTCGTGCCCGTCGCGCTAAACAAGGTTATCCAACTTAAGTCCGATGGTGTGGCATTTAGATTTGTTCCTGATTCTTCTCAGGTGGCAAACGCAATGAAGTTAATGGAAAATGAAGGCCAGTATGTGAATGATGGATTTCCAGGGGTT-CCAGTTTTTCAGT-CAAGGAGTCTAGTCCTGATGAGTTATAACAAGAGATATCGTCCAGTTTTCTTCAGAAAGGAGGACTTGGATAACTCACTACATCGAGCCTCTCGTGACCAGCAAAAGCCTAACCCTGCTGTAAAAATGGGTGACATTCAGGTTTCTTCTTTGGAGAATATCATCAAATCTATGAAGGATAGCTCCTCTTCCAAATGGGATGATGCTGTTTTTATTCCTCCAGGATTTGATCTTGCTACTAGTTCAAAGCAATCGAATCATGACAACTAGATCTTTATTTATGTTGAAGCTGCTTAACTGCTCTTGTCATGGAAATGCTTACATGAACATATTGAAGAAATAGAATACATGTTCATACCATACTAGCAACTTGATAATGGGTAATGCAATTATAAGTTAAAAAAAA]
[+] EMBL AK071498 [CTTCCCCGCCGGCCGCCGCTCCCCTCCTCGCCACCGCCGCCATGCCTTTCCACTTCCAATTCCCATGGCTCCCCAACAACCCCACCTCCTCCTCCTCCTCCCCAACGAAACCACCTAGCCCTGCAATCCCCAACCCCTTCCTCCCCATCCAGGCCGGCCTCGCCTCCTTCCTCTCCTCCCTCCCGCTCCCACGCGCGGCCTTCCCGCCGCCGCCCTGGGCTCGCATCTCCTCCGCCTCAGCCTCCGCGGCCTCGGCCTCGGCTCTCCCCGTGGCGGAGATCGAGGAGCGGCTCGCGGGGGTCCCCGTGTACGCGCTCGCCAACTCCTCGCAGGAGTTCGTGCTCGTGTCGTCCGCCCGCGGTGGGGGTGGGGGTGGGGGAGGTGCCCGGGCGGCGGTGCCGCCGCCGGCGCTCGGGCTCCTGTGCTTCCGGAGGGAGGACGCCGACGCCCTCCTGGCGCAGATGGACGGGGACATGGCGGCTGGCTCCACCGTCGTGCCCGTCGCGCTAAACAAGGTTATCCAACTTAAGTCCGATGGTGTGGCATTTAGATTTGTTCCTGATTCTTCTCAGGTGGCAAACGCAATGAAGTTAATGGAAAATGAAGGCCAGTATGTGAATGATGGATTTCCAGGGGTT CCAGTTTTTCAGT CAAGGAGTCTAGTCCTGATGAGTTATAACAAGAGATATCGTCCAGTTTTCTTCAGAAAGGAGGACTTGGATAACTCACTACATCGAGCCTCTCGTGACCAGCAAAAGCCTAACCCTGCTGTAAAAATGGGTGACATTCAGGTTTCTTCTTTGGAGAATATCATCAAATCTATGAAGGATAGCTCCTCTTCCAAATGGGATGATGCTGTTTTTATTCCTCCAGGATTTGATCTTGCTACTAGTTCAAAGCAATCGAATCATGACAACTAGATCTTTATTTATGTTGAAGCTGCTTAACTGCTCTTGTCATGGAAATGCTTACATGAACATATTGAAGAAATAGAATACATGTTCATACCATACTAGCAACTTGATAATGGGTAATGCAATTATAAGTTt ]
[+] EMBL CA757016 [ CGGTGCCGCCGCCGGCGCTCGGGCTCCTGTGCTTCCGGAGGGAGGACGCCGACGCCCTCCTGGCGCAGATGGACGGGGACATGGCGGCTGGCTCCACCGTCGTGCCCGTCGCGCTAAACAAGGTTATCCAACTTAAGTCCGATGGTGTGGCATTTAGATTTGTTCCTGATTCTTCTCAGGTGGCAAACGCAATGAAGTTAATGGAAAATGAAGGCCAGTATGTGAATGATGGATTT ]
[+] EMBL AU094368 [ TAATGGAAAATGAAGGCCAGTATGTGAATGATGGATTTCCAGGGGTTCCCAGTTTTTCAGTCCAAGGAGTCTAGTCCTGATGAGTGATAACAAGAGATATCGTCCAGTTTTCTTCAGAAAGGAGGACTTGGATAACTCACTACATCGANCCTCTCGTGACCAGCAAAAGCCTAACCCTGCTGTAAAAATGGGTGACATTCAGGTTTCTTCTTTGGAGAATATCATCAAATCTATGAAGGATAGCTCCTCTTCCAAATGGGATGATGCTGTTTTTATTCCTCCAGGATTTGATCTTGCTACTAGTTCAAAGCAATCGAATCATGACAACTAGATCTTTATTTATGTTGAAGCTGCTTAACTGCTCTTGTCATGGAAATGCTTACATGAACATATTGAAGAAATAGAATACATGTTCATACCAaaaaaaaa ]
[+] EMBL CF308067 [ TTATTCCTCCAGGATTTGATCTTGCTACTAGTTCAAAGCAATCGAATCATGACAACTAGATCTTTATTTATGTTGAAGCTGCTTAACTGCTCTTGTCATGGAAATGCTTACATGAACATATTGAAGAAATAGAATACATGTTCATACCATACTAGCAACTTGATAATGGGTAATGCAATTATAAGTTAAAAAAA ]
[-] EMBL CF308068 [ TATTCCTCCAGGATTTGATCTTGCTACTAGTTCAAAGCAATCGAATCATGACAAATAGATCTTTATTTATGTTGAAGCTGCTTAACTGCTCTTGTCATGGAAATGCTTACATGAACATATTGAAGAAATAGAATACATGTTCATACCATACTAGCAACTTGATAATGGGTAATGCAATTAGAAGTTAAAAAAAA]
consensusID : consensus_9554#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 373 fasta sequence
[TCCCCNCCANCCGCCNCACCCCNCCTNACCACCACCNCCATNCCTTTCCACTTCCAATTCCCATGGCTCCCCAACAACCCCACCTCCTCCNNCTCCTCCCCAACGAAACCACCTAGCCCTGCAATCCCCAACCCCTTCCTCCCCATCCAGGCCGGCCTCGCTCCTTCCTCTNCTCCCTCCNGCTCCCACGCGCGGCCTTCCCGCCGGCGCCCTGGGNTCGCATCTCCTCCGCCTCAGCCTCCGCGGCCTCGGCTCGGCTCTCCCCGTGGCGGAGATCGAGGAGCGGCTCGGGAGGGGTCCNGTGTACGCGNTCGCCAACTTCTCGCAGGAGTTCGTGCTCGTGTCGTCCGGNCGCGTTGGGGGTNGGGGGTTG]
[+] EMBL OSC187 [TCCCCNCCANCCGCCNCACCCCNCCTNACCACCACCNCCATNCCTTTCCACTTCCAATTCCCATGGCTCCCCAACAACCCCACCTCCTCCNNCTCCTCCCCAACGAAACCACCTAGCCCTGCAATCCCCAACCCCTTCCTCCCCATCCAGGCCGGCCTCGCTCCTTCCTCTNCTCCCTCCNGCTCCCACGCGCGGCCTTCCCGCCGGCGCCCTGGGNTCGCATCTCCTCCGCCTCAGCCTCCGCGGCCTCGGCTCGGCTCTCCCCGTGGCGGAGATCGAGGAGCGGCTCGGGAGGGGTCCNGTGTACGCGNTCGCCAACTTCTCGCAGGAGTTCGTGCTCGTGTCGTCCGGNCGCGTTGGGGGTNGGGGGTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9554#0 CTTCCCCGCCGGCCGCCGCTCCCCTCCTCGCCACCGCCGCCATGCCTTTCCACTTCCAAT 60
consensus_9554#1 --TCCCCNCCANCCGCCNCACCCCNCCTNACCACCACCNCCATNCCTTTCCACTTCCAAT 58
***** ** ***** * **** *** ***** ** **** ****************
consensus_9554#0 TCCCATGGCTCCCCAACAACCCCACCTCCTCCTCCTCCTCCCCAACGAAACCACCTAGCC 120
consensus_9554#1 TCCCATGGCTCCCCAACAACCCCACCTCCTCCNNCTCCTCCCCAACGAAACCACCTAGCC 118
******************************** **************************
consensus_9554#0 CTGCAATCCCCAACCCCTTCCTCCCCATCCAGGCCGGCCTCGCCTCCTTCCTCTCCTCCC 180
consensus_9554#1 CTGCAATCCCCAACCCCTTCCTCCCCATCCAGGCCGGCCTCGC-TCCTTCCTCTNCTCCC 177
******************************************* ********** *****
consensus_9554#0 TCCCGCTCCCACGCGCGGCCTTCCCGCCGCCGCCCTGGGCTCGCATCTCCTCCGCCTCAG 240
consensus_9554#1 TCCNGCTCCCACGCGCGGCCTTCCCGCCGGCGCCCTGGGNTCGCATCTCCTCCGCCTCAG 237
*** ************************* ********* ********************
consensus_9554#0 CCTCCGCGGCCTCGGCCTCGGCTCTCCCCGTGGCGGAGATCGAGGAGCGGCTCGCGGGGG 300
consensus_9554#1 CCTCCGCGGCCTCGGC-TCGGCTCTCCCCGTGGCGGAGATCGAGGAGCGGCTCGGGAGGG 296
**************** ************************************* * ***
consensus_9554#0 TCCCCGTGTACGCGCTCGCCAACTCCTCGCAGGAGTTCGTGCTCGTGTCGTCCGCCCGCG 360
consensus_9554#1 GTCCNGTGTACGCGNTCGCCAACTTCTCGCAGGAGTTCGTGCTCGTGTCGTCCGGNCGCG 356
** ********* ********* ***************************** ****
consensus_9554#0 GTGGGGGTGGGGGTGGGGGAGGTGCCCGGGCGGCGGTGCCGCCGCCGGCGCTCGGGCTCC 420
consensus_9554#1 TTGGGGGTNGGGGGTTG------------------------------------------- 373
******* **** *
consensus_9554#0 TGTGCTTCCGGAGGGAGGACGCCGACGCCCTCCTGGCGCAGATGGACGGGGACATGGCGG 480
consensus_9554#1 ------------------------------------------------------------
consensus_9554#0 CTGGCTCCACCGTCGTGCCCGTCGCGCTAAACAAGGTTATCCAACTTAAGTCCGATGGTG 540
consensus_9554#1 ------------------------------------------------------------
consensus_9554#0 TGGCATTTAGATTTGTTCCTGATTCTTCTCAGGTGGCAAACGCAATGAAGTTAATGGAAA 600
consensus_9554#1 ------------------------------------------------------------
consensus_9554#0 ATGAAGGCCAGTATGTGAATGATGGATTTCCAGGGGTTCCAGTTTTTCAGTCAAGGAGTC 660
consensus_9554#1 ------------------------------------------------------------
consensus_9554#0 TAGTCCTGATGAGTTATAACAAGAGATATCGTCCAGTTTTCTTCAGAAAGGAGGACTTGG 720
consensus_9554#1 ------------------------------------------------------------
consensus_9554#0 ATAACTCACTACATCGAGCCTCTCGTGACCAGCAAAAGCCTAACCCTGCTGTAAAAATGG 780
consensus_9554#1 ------------------------------------------------------------
consensus_9554#0 GTGACATTCAGGTTTCTTCTTTGGAGAATATCATCAAATCTATGAAGGATAGCTCCTCTT 840
consensus_9554#1 ------------------------------------------------------------
consensus_9554#0 CCAAATGGGATGATGCTGTTTTTATTCCTCCAGGATTTGATCTTGCTACTAGTTCAAAGC 900
consensus_9554#1 ------------------------------------------------------------
consensus_9554#0 AATCGAATCATGACAACTAGATCTTTATTTATGTTGAAGCTGCTTAACTGCTCTTGTCAT 960
consensus_9554#1 ------------------------------------------------------------
consensus_9554#0 GGAAATGCTTACATGAACATATTGAAGAAATAGAATACATGTTCATACCATACTAGCAAC 1020
consensus_9554#1 ------------------------------------------------------------
consensus_9554#0 TTGATAATGGGTAATGCAATTATAAGTTAAAAAAAA 1056
consensus_9554#1 ------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||