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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9557#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1156 fasta sequence
[ATCGAGCTACATTTTGCTAACTATCCAGTACCAAGAACGGAGCTGCAAGGAAGAGACGTACGATGACCATGACGTCGACGACGACGAAGGCCATGGCGATGGCGGCGGCGGTCCTCGCCGCCGCCGCCGTCGCGGCGACGAACGCGCAGACGTGCGGGAAGCAGAACGACGGCATGATCTGCCCGCACAACCTGTGCTGCAGCCAGTTCGGGTACTGCGGCCTCGGCCGCGACTACTGCGGCACGGGGTGCCAGAGCGGCGCCTGCTGCTCCAGCCAGCGCTGCGGCAGCCAGGGCGGCGGCGCCACCTGCTCCAACAACCAGTGCTGCAGCCAGTACGGCTACTGCGGCTTCGGCTCCGAGTACTGCGGCTCCGGGTGCCAGAACGGGCCGTGCCGCGCCGACATCAAGTGCGGCCGCAACGCCAACGGCGAGCTCTGCCCCAACAACATGTGCTGCAGCCAGTGGGGATACTGCGGCCTCGGCAGCGAGTTCTGCGGCAACGGATGCCAGAGCGGCGCGTGCTGCCCGGAGAAGCGGTGCGGCAAGCAGGCCGGCGGGGACAAGTGCCCCAACAACTTCTGCTGCAGTGCCGGCGGCTACTGCGGCCTCGGCGGCAACTACTGCGGCTCCGGCTGCCAGAGCGGCGGCTGCTACAAGGGTGGCGACGGCATGGCGGCCATCCTGGCTAACAACCAGAGCGTCTCTTTCGAAGGGATCATCGAGTCAGTGGCTGAGCTTGTGTAGATCGATGAGTCGATCGTCGCCATGAGCGTTTTCTGCTTTGTATGCCTCTCGGCGTACAGGGCTTTTCAGCTTAGCTGCCTTTCAATAAAATCACTGATCATGGCGATCGACATGCAGAGCAGTGTTGTGTACGTAGTTGCTCATCTGAATAAATAAAGGGGCTGAGCCTGAGCTGCTGCCTAGCTCGCACCAACAGAGTCCGGCCGGGAGGAGTTGTAGTTTCTGAAGGTGAGCTAGCTAGCTTTGGGATCGATGTATGGATCAGCAATGTAACAATGTGTTGTGGAAGCCCGTAGCTACTAACTAGCTCATTGGTGCATGAAATATATGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK103206 [ATCGAGCTACATTTTGCTAACTATCCAGTACCAAGAACGGAGCTGCAAGGAAGAGACGTACGATGACCATGACGTCGACGACGACGAAGGCCATGGCGATGGCGGCGGCGGTCCTCGCCGCCGCCGCCGTCGCGGCGACGAACGCGCAGACGTGCGGGAAGCAGAACGACGGCATGATCTGCCCGCACAACCTGTGCTGCAGCCAGTTCGGGTACTGCGGCCTCGGCCGCGACTACTGCGGCACGGGGTGCCAGAGCGGCGCCTGCTGCTCCAGCCAGCGCTGCGGCAGCCAGGGCGGCGGCGCCACCTGCTCCAACAACCAGTGCTGCAGCCAGTACGGCTACTGCGGCTTCGGCTCCGAGTACTGCGGCTCCGGGTGCCAGAACGGGCCGTGCCGCGCCGACATCAAGTGCGGCCGCAACGCCAACGGCGAGCTCTGCCCCAACAACATGTGCTGCAGCCAGTGGGGATACTGCGGCCTCGGCAGCGAGTTCTGCGGCAACGGATGCCAGAGCGGCGCGTGCTGCCCGGAGAAGCGGTGCGGCAAGCAGGCCGGCGGGGACAAGTGCCCCAACAACTTCTGCTGCAGTGCCGGCGGCTACTGCGGCCTCGGCGGCAACTACTGCGGCTCCGGCTGCCAGAGCGGCGGCTGCTACAAGGGTGGCGACGGCATGGCGGCCATCCTGGCTAACAACCAGAGCGTCTCTTTCGAAGGGATCATCGAGTCAGTGGCTGAGCTTGTGTAGATCGATGAGTCGATCGTCGCCATGAGCGTTTTCTGCTTTGTATGCCTCTCGGCGTACAGGGCTTTTCAGCTTAGCTGCCTTTCAATAAAATCACTGATCATGGCGATCGACATGCAGAGCAGTGTTGTGTACGTAGTTGCTCATCTGAATAAATAAAGGGGCTGAGCCTGAGCTGCTGCCTAGCTCGCACCAACAGAGTCCGGCCGGGAGGAGTTGTAGTTTCTGAAGGTGAGCTAGCTAGCTTTGGGATCGATGTATGGATCAGCAATGTAACAATGTGTTGTGGAAGCCCGTAGCTACTAACTAGCTCATTGGTGCATGAAATATATGTC ]
[+] EMBL AU174453 [ TTTTGCTAACTATCCAGTACCAAGAACGGAGCTGCAAGGAAGAGACGTACGATGACCATGACGTCGACGACGACGAAGGCCATGGCGATGGCGGCGGCGGTCCTCGCCGCCGCCGCCGTCGCGGCGACGAACGCGCAGACGTGCGGGAAGCAGAACGACGGCATGATCTGCCCGCACAACCTGTGCTGCAGCCAGTTCGGGTACTGCGGCCTCGGCCGCGACTACTGCGGCACGGGGTGCCAGAGCGGCGCCTGCTGCTCCAGCCAGCGCTGCGGCAGCCAGGGCGGCGGCGCCACCTGCTCCAACAACCAGTGCTGCAGCCAGTACGGCTACTGCGGCTTCGGCTCCGAGTACTGCGGCTCCGGGTGCCAGAACGGGCCGTGCCGCGCC ]
[+] EMBL OSLECTIN [ TGCTAACTATCCAGTACCAAGAACGGAGCTGCAAGGAAGAGACGTACGATGACCATGACGTCGACGACGACGAAGGCCATGGCGATGGCGGCGGCGGTCCTCGCCGCCGCCGCCGTCGCGGCGACGAACGCGCAGACGTGCGGGAAGCAGAACGACGGCATGATCTGCCCGCACAACCTGTGCTGCAGCCAGTTCGGGTACTGCGGCCTCGGCCGCGACTACTGCGGCACGGGGTGCCAGAGCGGCGCCTGCTGCTCCAGCCAGCGCTGCGGCAGCCAGGGCGGCGGCGCCACCTGCTCCAACAACCAGTGCTGCAGCCAGTACGGCTACTGCGGCTTCGGCTCCGAGTACTGCGGCTCCGGGTGCCAGAACGGGCCGTGCCGCGCCGACATCAAGTGCGGCCGCAACGCCAACGGCGAGCTCTGCCCCAACAACATGTGCTGCAGCCAGTGGGGATACTGCGGCCTCGGCAGCGAGTTCTGCGGCAACGGATGCCAGAGCGGCGCGTGCTGCCCGGAGAAGCGGTGCGGCAAGCAGGCCGGCGGGGACAAGTGCCCCAACAACTTCTGCTGCAGTGCCGGCGGCTACTGCGGCCTCGGCGGCAACTACTGCGGCTCCGGCTGCCAGAGCGGCGGCTGCTACAAGGGTGGCGACGGCATGGCGGCCATCCTGGCTAACAACCAGAGCGTCTCTTTCGAAGGGATCATCGAGTCAGTGGCTGAGCTTGTGTAGATCGATGAGTCGATCGTCGCCATGAGCGTTTTCTGCTTTGTATGCCTCTCGGCGTACAGGGCTTTTCAGCTTAGCTGCCTTTCAATAAAATCACTGATCATGGCGATCGACATGCAGAGCAGTGTTGTGTACGTAGTTGCTCATCTGAATAAATAAAGGGGCTGAGCCTGAGCTGCTGCCTAGCTCGCACCAACAGAGTCCGGCCGGGAGGAGTTGTAGTTTCTGAAGGTGAGCTAGCTAGCTTTGGGATCGATGTATGGATCAGCAATGTAACAATGTGTTGT ]
[-] EMBL AU094599 [ GCGAGCTCTGCCCCAACAACATGTGCTGCAGCCAGTGGGGATACTGCGGCCTCGGCAGCGAGTTCTGCGGCAACGGATGCCAGAGCGGCGCGTGCTGCCCGGAGAAGCGGTGCGGCAAGCAGGCCGGCGGGGACAAGTGCCCCAACAACTTCTGCTGCAGTGCCGGCGGCTACTGCGGCCTCGGCGGCAACTACTGCGGCTCCGGCTGCCAGAGCGGCGGCTGCTACAAGGGTGGCGACGGCATGGCGGCCATCCTGGCTAACAACCAGAGCGTCTCTTTCGAAGGGATCATCGAGTCAGTGGCTGAGCTTGTGTAGATCGATGAGTCGATCGTCGCCATGAGCGTTTTCTGCTTTGTATGCCTCTCGGCGTACAGGGCTTTTCAGCTTAGCTGCCTTTCAATAAAATCACTGATCATGGCGATCGACATGCAGAGCAGTGTTGTGTACGTAGTTGCTCATCTGAATAAATAAAGGGGCTGAGCCTGAGCTGCTGCCTAGCTCGCACCAACAGAGTCCGGCCGGGAGGAGTTGTAGTTTCTGAAGGTGAGCT ]
[+] EMBL AU164978 [ TGAATAAATAAAGGGGCTGAGCCTGAGCTGCTGCCTAGCTCGCACCAACAGAGTCCGGCCGGGAGGAGTTGTAGTTTCTGAAGGTGAGCTAGCTAGCTTTGGGATCGATGTATGGATCAGCAATGTAACAATGTGTTGTGGAAGCCCGTAGCTACTAACTAGCTCATTGGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_9557#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 387 fasta sequence
[GCTAANAACCCAGAGCGTCTCTTTCGAAGGGATCATCGAGTCAAGTGGCTGAGCTTGTGTAGATCGATGAGTCGATCGTCGCNCATGAGCGTTTTCTGCTTTTGNTATCTCTCGNCCGTACAGGCTTTTCAGCTTAGCTGCCTTTCAATAAAATCACTGATCATGGCGATCGACATGCAGAGCAGTGTTGTGTACGTAGTTGCTCATCTGAATAAATAAAGGGCTGAGCCTGAGCTGCTGCCTAGCTCGCACCAACAGAGTCCGGCCGGGAGGAGTTGTAGTTTCTGAAGGTGAGCTAGCTAGCTTTGGGATCGATGTATGGATCAGCAATGTAACAATGTGTTGTGGAAGCCCGTAGCTACTAACTAGCTCATTNGGNTNGNCNAA]
[-] EMBL OSC4361 [GCTAANAACCCAGAGCGTCTCTTTCGAAGGGATCATCGAGTCAAGTGGCTGAGCTTGTGTAGATCGATGAGTCGATCGTCGCNCATGAGCGTTTTCTGCTTTTGNTATCTCTCGNCCGTACAGGCTTTTCAGCTTAGCTGCCTTTCAATAAAATCACTGATCATGGCGATCGACATGCAGAGCAGTGTTGTGTACGTAGTTGCTCATCTGAATAAATAAAGGGCTGAGCCTGAGCTGCTGCCTAGCTCGCACCAACAGAGTCCGGCCGGGAGGAGTTGTAGTTTCTGAAGGTGAGCTAGCTAGCTTTGGGATCGATGTATGGATCAGCAATGTAACAATGTGTTGTGGAAGCCCGTAGCTACTAACTAGCTCATTNGGNTNGNCNAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9557#0 ATCGAGCTACATTTTGCTAACTATCCAGTACCAAGAACGGAGCTGCAAGGAAGAGACGTA 60
consensus_9557#1 ------------------------------------------------------------
consensus_9557#0 CGATGACCATGACGTCGACGACGACGAAGGCCATGGCGATGGCGGCGGCGGTCCTCGCCG 120
consensus_9557#1 ------------------------------------------------------------
consensus_9557#0 CCGCCGCCGTCGCGGCGACGAACGCGCAGACGTGCGGGAAGCAGAACGACGGCATGATCT 180
consensus_9557#1 ------------------------------------------------------------
consensus_9557#0 GCCCGCACAACCTGTGCTGCAGCCAGTTCGGGTACTGCGGCCTCGGCCGCGACTACTGCG 240
consensus_9557#1 ------------------------------------------------------------
consensus_9557#0 GCACGGGGTGCCAGAGCGGCGCCTGCTGCTCCAGCCAGCGCTGCGGCAGCCAGGGCGGCG 300
consensus_9557#1 ------------------------------------------------------------
consensus_9557#0 GCGCCACCTGCTCCAACAACCAGTGCTGCAGCCAGTACGGCTACTGCGGCTTCGGCTCCG 360
consensus_9557#1 ------------------------------------------------------------
consensus_9557#0 AGTACTGCGGCTCCGGGTGCCAGAACGGGCCGTGCCGCGCCGACATCAAGTGCGGCCGCA 420
consensus_9557#1 ------------------------------------------------------------
consensus_9557#0 ACGCCAACGGCGAGCTCTGCCCCAACAACATGTGCTGCAGCCAGTGGGGATACTGCGGCC 480
consensus_9557#1 ------------------------------------------------------------
consensus_9557#0 TCGGCAGCGAGTTCTGCGGCAACGGATGCCAGAGCGGCGCGTGCTGCCCGGAGAAGCGGT 540
consensus_9557#1 ------------------------------------------------------------
consensus_9557#0 GCGGCAAGCAGGCCGGCGGGGACAAGTGCCCCAACAACTTCTGCTGCAGTGCCGGCGGCT 600
consensus_9557#1 ------------------------------------------------------------
consensus_9557#0 ACTGCGGCCTCGGCGGCAACTACTGCGGCTCCGGCTGCCAGAGCGGCGGCTGCTACAAGG 660
consensus_9557#1 ------------------------------------------------------------
consensus_9557#0 GTGGCGACGGCATGGCGGCCATCCTGGCTAACAACC-AGAGCGTCTCTTTCGAAGGGATC 719
consensus_9557#1 --------------------------GCTAANAACCCAGAGCGTCTCTTTCGAAGGGATC 34
***** **** ***********************
consensus_9557#0 ATCGAGTCA-GTGGCTGAGCTTGTGTAGATCGATGAGTCGATCGTCGCC-ATGAGCGTTT 777
consensus_9557#1 ATCGAGTCAAGTGGCTGAGCTTGTGTAGATCGATGAGTCGATCGTCGCNCATGAGCGTTT 94
********* ************************************** **********
consensus_9557#0 TCTGCTTTGTATGCCTCTCGGC-GTACAGGGCTTTTCAGCTTAGCTGCCTTTCAATAAAA 836
consensus_9557#1 TCTGCTTTTGNTATCTCTCGNCCGTACAGG-CTTTTCAGCTTAGCTGCCTTTCAATAAAA 153
******** * ****** * ******* *****************************
consensus_9557#0 TCACTGATCATGGCGATCGACATGCAGAGCAGTGTTGTGTACGTAGTTGCTCATCTGAAT 896
consensus_9557#1 TCACTGATCATGGCGATCGACATGCAGAGCAGTGTTGTGTACGTAGTTGCTCATCTGAAT 213
************************************************************
consensus_9557#0 AAATAAAGGGGCTGAGCCTGAGCTGCTGCCTAGCTCGCACCAACAGAGTCCGGCCGGGAG 956
consensus_9557#1 AAATAAAGGG-CTGAGCCTGAGCTGCTGCCTAGCTCGCACCAACAGAGTCCGGCCGGGAG 272
********** *************************************************
consensus_9557#0 GAGTTGTAGTTTCTGAAGGTGAGCTAGCTAGCTTTGGGATCGATGTATGGATCAGCAATG 1016
consensus_9557#1 GAGTTGTAGTTTCTGAAGGTGAGCTAGCTAGCTTTGGGATCGATGTATGGATCAGCAATG 332
************************************************************
consensus_9557#0 TAACAATGTGTTGTGGAAGCCCGTAGCTACTAACTAGCTCATTGGTGCATGAAATATATG 1076
consensus_9557#1 TAACAATGTGTTGTGGAAGCCCGTAGCTACTAACTAGCTCATTNGGNTNGNCNAA----- 387
******************************************* * *
consensus_9557#0 TCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1136
consensus_9557#1 ------------------------------------------------------------
consensus_9557#0 AAAAAAAAAAAAAAAAAAAA 1156
consensus_9557#1 --------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||