cluster # 9566

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Oryza sativa
cluster # 9566 cluster # 9566 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9566#0 length = 1442 sequences # 3

consensus_9566#1 length = 670 sequences # 3

consensusID : consensus_9566#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1442
fasta sequence

                              [AAGACGCAAATNAGGTACTGATGTTTTTAGGACCACAAGCATTGAGAAAGGTTATAGAAGACGCGGAACTGTATCCCATAAGAGGTCTTTTCTCCTTCAAAGATTTCTTCCCTGAGATCGATAATTATTATCTTGGAATCCGTGGGGATGAGCTTGGTGTTCCTACTGGATGGAAATCCATGGATGAGCTTTACAAGGTTGTTCCTGGGGAGTTGACTGTAGTAACAGGAGTNCCGAATTCTGGTAAAAGTGAGTGGATTGATGCTTTACTGTGCAATATAAATNACCAGGTTGGGTGGAAATTCGTTCTGTGCTCAATGGAAAACAAGGTCAGGGAGCATGCTAGAAAGCTCTTAGAGAAGCGCATTAAGGAACCATTCTTTGATGCTAGATATGGGGGCTCTNCAGAAGGAATGAGTCTAGACGAATTTGAAGAAGGCAAGCAATGGCTGAATGAAACATTCCATCTGATCCGGTGTGAAGATGATTGCCTTCCATCTGTTAATTGGGTTCTCGAGCTTGCTAAAGCTGCAGTTCTAAGATATGGAGTGCGTGGTCTTGTGATTGATCCCTACAATGAACTTGATCACCAACGCCCCTCAAATCAAACCGAAACAGAATATGTCAGTCAGATGCTTACCAAGATTAAGCGGTTTGCTCAGCACCATTCTTGTCATGTTTGGTTTGTTGCCCACCCTAGACAGCTTCATAACTGGAATGGTGGTCCTCCTAATATGTATGACATCAGTGGAAGCGCACATTTCATAAACAAATGTGATAATGGAATTGTCATCCATCGAAACAGGGATCCAAACAGTGGCCCACTTGATGTTGTGCAGGTTTGTGTGAGGAAGGTGCGCAACAAAGTGATTGGACAAATAGGAGATGCTTTCTTGTCATATGAACGGGTTAGTGGTGAGTTCAGGGATGCTGATAAAGATACTGCAAAGAAGGCTGCTGTTGCAGCCGCTAATGTAGCAAAAGCCCCACAGAGGAAAGGATAGATCCGCTGATTTGATTTACTCACTCACTGACCGATCGCACAAGGTGGAGCGATATTGTTCTTGATGCTGCACACTACTGGAGACCGTGGCCAACTTCATATGCTGGAGCTGACTGGTCAGTATTTTTTTTGCGACAAGACCCTTTGGAGGTCACCTGTCTGCTGCAGAATTTGGTGGGAAGATGGTTAACCTTGTTACATGGCCTACAAGACATTATTTGGGCGATGTATATCAAAGCATCAATTGTAGTTAATTTTACACCAGGTGCTATGAACATATTGGTGGATTCTATCAGTAGGGAAACTTCATCAGATTATTATGTACTATGCCCTTCCAAAAGTTGTAGTTGCTGGAAGGGCGTTTATTAATCCATCAGATGTATTTATTCCAGGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL OSS14444A            [AAGACGCAAATNAGGTACTGATGTTTTTAGGACCACAAGCATTGAGAAAGGTTATAGAAGACGCGGAACTGTATCCCATAAGAGGTCTTTTCTCCTTCAAAGATTTCTTCCCTGAGATCGATAATTATTATCTTGGAATCCGTGGGGATGAGCTTGGTGTTCCTACTGGATGGAAATCCATGGATGAGCTTTACAAGGTTGTTCCTGGGGAGTTGACTGTAGTAACAGGAGTNCCGAATTCTGGTAAAAGTGAGTGGATTGATGCTTTACTGTGCAATATAAATNACCAGGTTGGGTGGAAATTCGTTCTGTGCTCAATGGAAAACAAGGTCAGGGAGCATGCTAGAAAGCTCTTAGAGAAGCGCATTAAGGAACCATTCTTTGATGCTAGATATGGGGGCTCTNCAGAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AK108468             [                                                                                                                                                                                                                                                                                                                                              GGAGCATGCTAGAAAGCTCTTAGAGAAGCGCATTAAGAAACCATTCTTTGATGCTAGATATGGGGGCTCTGCAGAAAGAATGAGTCTAGACGAATTTGAAGAAGGCAAGCAATGGCTGAATGAAACATTCCATCTGATCCGGTGTGAAGATGATTGCCTTCCATCTGTTAATTGGGTTCTCGAGCTTGCTAAAGCTGCAGTTCTAAGATATGGAGTGCGTGGTCTTGTGATTGATCCCTACAATGAACTTGATCACCAACGCCCCTCAAATCAAACCGAAACAGAATATGTCAGTCAGATGCTTACCAAGATTAAGCGGTTTGCTCAGCACCATTCTTGTCATGTTTGGTTTGTTGCCCACCCTAGACAGCTTCATAACTGGAATGGTGGTCCTCCTAATATGTATGACATCAGTGGAAGCGCACATTTCATAAACAAATGTGATAATGGAATTGTCATCCATCGAAACAGGGATCCAAACAGTGGCCCACTTGATGTTGTGCAGGTTTGTGTGAGGAAGGTGCGCAACAAAGTGATTGGACAAATAGGAGATGCTTTCTTGTCATATGAACGGGTTAGTGGTGAGTTCAGGGATGCTGATAAAGATACTGCAAAGAAGGCTGCTGTTGCAGCCGCTAATGTAGCAAAAGCCCCACAGAGGAAAGGATAGATCCGCTGATTTGATTTACTCACTCACTGACCGATCGCACAAGGTGGAGCGATATTGTTCTTGATGCTGCACACTACTGGAGACCGTGGCCAACTTCATATGCTGGAGCTGACTGGTCAGTATTTTTTTTGCGACAAGACCCTTTGGAGGTCACCTGTCTGCTGCAGAATTTGGTGGGAAGATGGTTAACCTTGTTACATGGCCTACAAGACATTATTTGGGCGATGTATATCAAAGCATCAATTGTAGTTAATTTTACACCAGGTGCTATGAACATATTGGTGGATTCTATCAGTAGGGAAACTTCATCAGATTATTATGTACTATGCCCTTCCAAAAGTTGTAGTTGCTGGAAGGGCGTTTATTAATCCATCAGATG                                                           ]
[+] EMBL CF318596             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                TCAGATTATTATGTACTATGCCCTTCCAAAAGTTGTAGTTGCTGGAAGGGCGTTTATTAATCCATCAGATGTATTTATTCCAGGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_9566#0
AAGACGCAAATNAGGTACTGATGTTTTTAGGACCACAAGCATTGAGAAAGGTTATAGAAG
ACGCGGAACTGTATCCCATAAGAGGTCTTTTCTCCTTCAAAGATTTCTTCCCTGAGATCG
ATAATTATTATCTTGGAATCCGTGGGGATGAGCTTGGTGTTCCTACTGGATGGAAATCCA
TGGATGAGCTTTACAAGGTTGTTCCTGGGGAGTTGACTGTAGTAACAGGAGTNCCGAATT
CTGGTAAAAGTGAGTGGATTGATGCTTTACTGTGCAATATAAATNACCAGGTTGGGTGGA
AATTCGTTCTGTGCTCAATGGAAAACAAGGTCAGGGAGCATGCTAGAAAGCTCTTAGAGA
AGCGCATTAAGGAACCATTCTTTGATGCTAGATATGGGGGCTCTNCAGAAGGAATGAGTC
TAGACGAATTTGAAGAAGGCAAGCAATGGCTGAATGAAACATTCCATCTGATCCGGTGTG
AAGATGATTGCCTTCCATCTGTTAATTGGGTTCTCGAGCTTGCTAAAGCTGCAGTTCTAA
GATATGGAGTGCGTGGTCTTGTGATTGATCCCTACAATGAACTTGATCACCAACGCCCCT
CAAATCAAACCGAAACAGAATATGTCAGTCAGATGCTTACCAAGATTAAGCGGTTTGCTC
AGCACCATTCTTGTCATGTTTGGTTTGTTGCCCACCCTAGACAGCTTCATAACTGGAATG
GTGGTCCTCCTAATATGTATGACATCAGTGGAAGCGCACATTTCATAAACAAATGTGATA
ATGGAATTGTCATCCATCGAAACAGGGATCCAAACAGTGGCCCACTTGATGTTGTGCAGG
TTTGTGTGAGGAAGGTGCGCAACAAAGTGATTGGACAAATAGGAGATGCTTTCTTGTCAT
ATGAACGGGTTAGTGGTGAGTTCAGGGATGCTGATAAAGATACTGCAAAGAAGGCTGCTG
TTGCAGCCGCTAATGTAGCAAAAGCCCCACAGAGGAAAGGATAGATCCGCTGATTTGATT
TACTCACTCACTGACCGATCGCACAAGGTGGAGCGATATTGTTCTTGATGCTGCACACTA
CTGGAGACCGTGGCCAACTTCATATGCTGGAGCTGACTGGTCAGTATTTTTTTTGCGACA
AGACCCTTTGGAGGTCACCTGTCTGCTGCAGAATTTGGTGGGAAGATGGTTAACCTTGTT
ACATGGCCTACAAGACATTATTTGGGCGATGTATATCAAAGCATCAATTGTAGTTAATTT
TACACCAGGTGCTATGAACATATTGGTGGATTCTATCAGTAGGGAAACTTCATCAGATTA
TTATGTACTATGCCCTTCCAAAAGTTGTAGTTGCTGGAAGGGCGTTTATTAATCCATCAG
ATGTATTTATTCCAGGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AA

consensusID : consensus_9566#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 670
fasta sequence

                              [ATGGAATTTGTCATCCATCGAAACAGGGANCCAAACAGTGGCCCACTTGATGTTGTGCAGGTTTGTGTGAGGAAGGTGCGCAACAAAGTGATTGGACAAATAGGAGATGCTTTCTTGTCATATGAACGGGTTAGTGGTGAGTTCAGGGATGCTGATAAAGATACTGCAAAGAAGGCTGCTGTTGCAGCCGCTAATGTAGCAAAAGCCCCA-CAGAGGAAAGGATAGATCCGCTGATTTGATTTACTCACTCACTGACCGATCGCACAAGGTGGAGCGATATTGTTCTTGATGCTGCACACTACTGGAGACCGTGGCCAACTTCATATGCTGGAGCTGACTGGTCAGTATTTTTTTTGCGACAAGACCCTTTGGAGGTCACCTGTCTGCTGCAGAATTTGGTGGGAAGATGGTTAACCTTGTTA-CATGG-CCTACAAGACATTATTTGGGCGATGTATATCAAAGCATCAATTGTAGTTAATTTTACACCAGGT-GCTATGAACATATTGGTGGATTCTATCAGTAGGGAAACTTCATCAGATTATTATGTACTATGCCCTTCCAAAAGTTGTAGTTGCTGGAAGGGCGTTTATTAATCCATCAGATGTATTTATTCCAGGCTTCCACATCTATGA-TCAGAATCTAATGATTTTTTATTACCCAAAAAAAAAAA]

[+] EMBL AU096614             [ATGGAATTTGTCATCCATCGAAACAGGGANCCAAACAGTGGCCCACTTGATGTTGTGCAGGTTTGTGTGAGGAAGGTGCGCAACAAAGTGATTGGACAAATAGGAGATGCTTTCTTGTCATATGAACGGGTTAGTGGTGAGTTCAGGGATGCTGATAAAGATACTGCAAAGAAGGCTGCTGTTGCAGCCGCTAATGTAGCAAAAGCCCCA CAGAGGAAAGGATAGATCCGCTGATTTGATTTACTCACTCACTGACCGATCGCACAAGGTGGAGCGATATTGTTCTTGATGCTGCACACTACTGGAGACCGTGGCCAACTTCATATGCTGGAGCTGACTGGTCAGTATTTTTTTTGCGACAAGACCNTTTGGAGGTCACCTGTCTGCTGCAGAATTTGGTGGGAAGATGGTTAACCTTGTTA CATGG CCTACAAGNCATTATTTGGGCGATGTATATCAAAGCATCAATTGTAGTTAATTTTACACCAGGT GCTATGAACATATTGGTGGATTCTATCAGTAGGGAAACTTCATCAGATTATTATGTACTATGCCCTTCCAAAAGTTGTAGTTGCTGGAAGGGCGTTTATTAATCCATCAGATGTATTTATTCCAGGCTTCCACATCTATGA TCAGAATCTAATGATTTTTTATTACCCAAAAAAAAAAA]
[-] EMBL CA758968             [                      ACAGGGATCCAAACAGTGGCCCACTTGATGTTGTGCAGGTTTGTGTGAGGAAGGTGCGCAACAAAGTGATTGGACAAATAGGAGATGCTTTCTTGTCATATGAACGGGTTAGTGGTGAGTTCAGGGATGCTGATAAAGATACTGCAAAGAAGGCTGCTGTTGCAGCCGCTAATGTAGCAAAAGCCCCA CAGAGGAAAGGATAGATCCGCTGATTTGATTTACTCACTCACTGACCGATCGCACAAGGTGGAGCGATATTGTTCTTGATGCTGCACACTACTGGAGACCGTGGCCAACTTCATATGCTGGAGCTGACTGGTCAGTATTTTTTTTGCGACAAGACCCTTTGGAGGTTACCTGTCTGCTGCAGAATTTGGTGGGAAGATGGTTAACCTTGTTA CATGG CCTACAAGACATTATTTGGGCGATGTATATCAAAGCATCAATTGTAGTTAATTTTACACCAGGT GCTATGAACATATTGGTGGATTCTATCAGTAGGGAAACTTCATCAGATTATTATGTACTATGCCCTTCCAAAAGTTGTAGTTGCTGGAAGGGCGTTTATTAATCCATCAGATGTATTTATTCCAGGCTTCCACATCTATGA TCAGAATCTAATGATTTTTTATTACCCAAAAAA     ]
[+] EMBL BM418702             [                                                                                                 cnATAGGAGATGCTTTCTNGTCATATGAACGGGTTAGTGGTGAGTTCAGGGATGCTGATAAAGATACTGCAAAGAAGGCTGCTGTTCCAGCCGCTAATGTAGCCAAAGCCCCACCAGAGGAAAGGATAGATCCGCTGATTTGATTTACTCACTCACTGACCGATCGCACAAGGTGGAGCGATATTGTTCTTGATGCTGCACACTACTGGAGACCGTGGCCAACTTCATATGCTGGAGCTGACTGGTCAGTATTTTTTTTGCGACAAGACCCTTTGGAGGTCACCTGTCTGCTGCAGAATTTGGTGGGAAGATGGTTAACCTTGTTACCATGGCCCTACAAGACATTATTTGGGCGATGTATATCAAAGCATCAATTGTAGTTAATTTTACACCAGGTGGCTATGAACATATTGGTGGATTCTATCAGTAGGGAAACTTCATCAGATTATTATGTACTATGCCCTTCC AAAGTTGTAGTTGCTGGAAGGGCGTTTATTAATCCATCAGATGTATTTATTCCAGGCTTCCACATCTATGACTCAGAATCTAATGATTTTTTATTACCCAAAA       ]




>consensus_9566#1
ATGGAATTTGTCATCCATCGAAACAGGGANCCAAACAGTGGCCCACTTGATGTTGTGCAG
GTTTGTGTGAGGAAGGTGCGCAACAAAGTGATTGGACAAATAGGAGATGCTTTCTTGTCA
TATGAACGGGTTAGTGGTGAGTTCAGGGATGCTGATAAAGATACTGCAAAGAAGGCTGCT
GTTGCAGCCGCTAATGTAGCAAAAGCCCCACAGAGGAAAGGATAGATCCGCTGATTTGAT
TTACTCACTCACTGACCGATCGCACAAGGTGGAGCGATATTGTTCTTGATGCTGCACACT
ACTGGAGACCGTGGCCAACTTCATATGCTGGAGCTGACTGGTCAGTATTTTTTTTGCGAC
AAGACCCTTTGGAGGTCACCTGTCTGCTGCAGAATTTGGTGGGAAGATGGTTAACCTTGT
TACATGGCCTACAAGACATTATTTGGGCGATGTATATCAAAGCATCAATTGTAGTTAATT
TTACACCAGGTGCTATGAACATATTGGTGGATTCTATCAGTAGGGAAACTTCATCAGATT
ATTATGTACTATGCCCTTCCAAAAGTTGTAGTTGCTGGAAGGGCGTTTATTAATCCATCA
GATGTATTTATTCCAGGCTTCCACATCTATGATCAGAATCTAATGATTTTTTATTACCCA
AAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9566#0      AAGACGCAAATNAGGTACTGATGTTTTTAGGACCACAAGCATTGAGAAAGGTTATAGAAG 60
consensus_9566#1      ------------------------------------------------------------
                                                                                  

consensus_9566#0      ACGCGGAACTGTATCCCATAAGAGGTCTTTTCTCCTTCAAAGATTTCTTCCCTGAGATCG 120
consensus_9566#1      ------------------------------------------------------------
                                                                                  

consensus_9566#0      ATAATTATTATCTTGGAATCCGTGGGGATGAGCTTGGTGTTCCTACTGGATGGAAATCCA 180
consensus_9566#1      ------------------------------------------------------------
                                                                                  

consensus_9566#0      TGGATGAGCTTTACAAGGTTGTTCCTGGGGAGTTGACTGTAGTAACAGGAGTNCCGAATT 240
consensus_9566#1      ------------------------------------------------------------
                                                                                  

consensus_9566#0      CTGGTAAAAGTGAGTGGATTGATGCTTTACTGTGCAATATAAATNACCAGGTTGGGTGGA 300
consensus_9566#1      ------------------------------------------------------------
                                                                                  

consensus_9566#0      AATTCGTTCTGTGCTCAATGGAAAACAAGGTCAGGGAGCATGCTAGAAAGCTCTTAGAGA 360
consensus_9566#1      ------------------------------------------------------------
                                                                                  

consensus_9566#0      AGCGCATTAAGGAACCATTCTTTGATGCTAGATATGGGGGCTCTNCAGAAGGAATGAGTC 420
consensus_9566#1      ------------------------------------------------------------
                                                                                  

consensus_9566#0      TAGACGAATTTGAAGAAGGCAAGCAATGGCTGAATGAAACATTCCATCTGATCCGGTGTG 480
consensus_9566#1      ------------------------------------------------------------
                                                                                  

consensus_9566#0      AAGATGATTGCCTTCCATCTGTTAATTGGGTTCTCGAGCTTGCTAAAGCTGCAGTTCTAA 540
consensus_9566#1      ------------------------------------------------------------
                                                                                  

consensus_9566#0      GATATGGAGTGCGTGGTCTTGTGATTGATCCCTACAATGAACTTGATCACCAACGCCCCT 600
consensus_9566#1      ------------------------------------------------------------
                                                                                  

consensus_9566#0      CAAATCAAACCGAAACAGAATATGTCAGTCAGATGCTTACCAAGATTAAGCGGTTTGCTC 660
consensus_9566#1      ------------------------------------------------------------
                                                                                  

consensus_9566#0      AGCACCATTCTTGTCATGTTTGGTTTGTTGCCCACCCTAGACAGCTTCATAACTGGAATG 720
consensus_9566#1      ------------------------------------------------------------
                                                                                  

consensus_9566#0      GTGGTCCTCCTAATATGTATGACATCAGTGGAAGCGCACATTTCATAAACAAATGTGATA 780
consensus_9566#1      ------------------------------------------------------------
                                                                                  

consensus_9566#0      ATGGAATT-GTCATCCATCGAAACAGGGATCCAAACAGTGGCCCACTTGATGTTGTGCAG 839
consensus_9566#1      ATGGAATTTGTCATCCATCGAAACAGGGANCCAAACAGTGGCCCACTTGATGTTGTGCAG 60
                      ******** ******************** ******************************

consensus_9566#0      GTTTGTGTGAGGAAGGTGCGCAACAAAGTGATTGGACAAATAGGAGATGCTTTCTTGTCA 899
consensus_9566#1      GTTTGTGTGAGGAAGGTGCGCAACAAAGTGATTGGACAAATAGGAGATGCTTTCTTGTCA 120
                      ************************************************************

consensus_9566#0      TATGAACGGGTTAGTGGTGAGTTCAGGGATGCTGATAAAGATACTGCAAAGAAGGCTGCT 959
consensus_9566#1      TATGAACGGGTTAGTGGTGAGTTCAGGGATGCTGATAAAGATACTGCAAAGAAGGCTGCT 180
                      ************************************************************

consensus_9566#0      GTTGCAGCCGCTAATGTAGCAAAAGCCCCACAGAGGAAAGGATAGATCCGCTGATTTGAT 1019
consensus_9566#1      GTTGCAGCCGCTAATGTAGCAAAAGCCCCACAGAGGAAAGGATAGATCCGCTGATTTGAT 240
                      ************************************************************

consensus_9566#0      TTACTCACTCACTGACCGATCGCACAAGGTGGAGCGATATTGTTCTTGATGCTGCACACT 1079
consensus_9566#1      TTACTCACTCACTGACCGATCGCACAAGGTGGAGCGATATTGTTCTTGATGCTGCACACT 300
                      ************************************************************

consensus_9566#0      ACTGGAGACCGTGGCCAACTTCATATGCTGGAGCTGACTGGTCAGTATTTTTTTTGCGAC 1139
consensus_9566#1      ACTGGAGACCGTGGCCAACTTCATATGCTGGAGCTGACTGGTCAGTATTTTTTTTGCGAC 360
                      ************************************************************

consensus_9566#0      AAGACCCTTTGGAGGTCACCTGTCTGCTGCAGAATTTGGTGGGAAGATGGTTAACCTTGT 1199
consensus_9566#1      AAGACCCTTTGGAGGTCACCTGTCTGCTGCAGAATTTGGTGGGAAGATGGTTAACCTTGT 420
                      ************************************************************

consensus_9566#0      TACATGGCCTACAAGACATTATTTGGGCGATGTATATCAAAGCATCAATTGTAGTTAATT 1259
consensus_9566#1      TACATGGCCTACAAGACATTATTTGGGCGATGTATATCAAAGCATCAATTGTAGTTAATT 480
                      ************************************************************

consensus_9566#0      TTACACCAGGTGCTATGAACATATTGGTGGATTCTATCAGTAGGGAAACTTCATCAGATT 1319
consensus_9566#1      TTACACCAGGTGCTATGAACATATTGGTGGATTCTATCAGTAGGGAAACTTCATCAGATT 540
                      ************************************************************

consensus_9566#0      ATTATGTACTATGCCCTTCCAAAAGTTGTAGTTGCTGGAAGGGCGTTTATTAATCCATCA 1379
consensus_9566#1      ATTATGTACTATGCCCTTCCAAAAGTTGTAGTTGCTGGAAGGGCGTTTATTAATCCATCA 600
                      ************************************************************

consensus_9566#0      GATGTATTTATTCCAGGCTAAAAAAAAAAAAAAAAAAAAAAAAAAA------AAAAAAAA 1433
consensus_9566#1      GATGTATTTATTCCAGGCTTCCACATCTATGATCAGAATCTAATGATTTTTTATTACCCA 660
                      *******************   * *   *  *  * **   **  *      *  *   *

consensus_9566#0      AAAAAAAAA- 1442
consensus_9566#1      AAAAAAAAAA 670
                      *********