cluster # 9569

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Oryza sativa
cluster # 9569 cluster # 9569 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9569#0 length = 669 sequences # 4

consensus_9569#1 length = 603 sequences # 1
consensus_9569#2 length = 533 sequences # 1

consensusID : consensus_9569#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 669
fasta sequence

                              [AGAGATACAGAAGAAGAGATGAGGATGAGAGCAAGAGGCATGTTTCTGAGATTGATGTCGAGAGAGAGGAAGAGTGCGGGATTTGCATGGAGATGAATAACAAGGTTGTCTTGCCCAACTGCAGCCATGCTATGTGCATGAAGTGTTACCGTCAATGGCGCTCAAGATCCCAGTCCTGCCCCTTCTGCCGTGACAGCCTCAAAAGAGTAAATTCTGGTGATCTGTGGATGCTCACAGATGACCGAGATGTCATTGACATGGCAACGATTACTAGAGAGAACCTTAGGCGCCTGTTTATGTACATTGAGAAGCTGCCTCTTGTTGCTCCGGACAACATCTTCTATGCCTATGATTCTCATGTAAAATAACCAGAGCTACTCATAATGACCTACTCATAATTGTTTTCGGAGAGTGACGCATGTCTTATTCATTCATGCAGAGGATGTTCCTTGTCGTAGGATGTGGCTAACCCCAGGAGCAGACTGAACTTTGACAAGAGAACTTGTGAATTCTGACTAGATCCAATGCTGTGGTCAGATGTTGTAAATGCTTGTACAGATTTGTAA-TTTG-CAGTGTAAAAAAATTAGTGAGGAAAAACCTTGTGTTCCACATTGAACTCCTAGTGTGAAATTCCAAGTACATAAA--------AAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK060662             [AGAGATACAGAAGAAGAGATGAGGATGAGAGCAAGAGGCATGTTTCTGAGATTGATGTCGAGAGAGAGGAAGAGTGCGGGATTTGCATGGAGATGAATAACAAGGTTGTCTTGCCCAACTGCAGCCATGCTATGTGCATGAAGTGTTACCGTCAATGGCGCTCAAGATCCCAGTCCTGCCCCTTCTGCCGTGACAGCCTCAAAAGAGTAAATTCTGGTGATCTGTGGATGCTCACAGATGACCGAGATGTCATTGACATGGCAACGATTACTAGAGAGAACCTTAGGCGCCTGTTTATGTACATTGAGAAGCTGCCTCTTGTTGCTCCGGACAACATCTTCTATGCCTATGATTCTCATGTAAAATAACCAGAGCTACTCATAATGACCTACTCATAATTGTTTTCGGAGAGTGACGCATGTCTTATTCATTCATGCAGAGGATGTTCCTTGTCGTAGGATGTGGCTAACCCCAGGAGCAGACTGAACTTTGACAAGAGAACTTGTGAATTCTGACTAGATCCAATGCTGTGGTCAGATGTTGTAAATGCTTGTACAGATTTGTAA TTTG CAGTGTAAAAAAATTAGTGAGGAAAAACCTTGTG                                                                         ]
[+] EMBL CA765789             [AGAGATACAGAAGAAGAGATGAGGATGAGAGCAAGAGGCATGTTTCTGAGATTGATGTCGAGAGAGAGGAAGAGTGCGGGATTTGCATGGAGATGAATAACAAGGTTGTCTTGCCCAACTGCAGCCATGCTATGTGCATGAAGTGTTACCGTCAATGGCGCTCAAGATCCCAGTCCTGCCCCTTCTGCCGTGACAGCCTCAAAAGAGTAAATTCTGGTGATCTGTGGATGCTCACAGATGACCGAGATGTCATTGACATGGCAACGATTACTAGAGAGAACCTTAGGCGCCTGTTTATGTACATTGAGAAGCTGCCTCTTGTTGCTCCGGACAACATCTTCTATGCCTATGATTCTCATGTAAAATAACCAGAGCTACTCATAATGACCTACTCATAATTGTTTTCGGAGAGTGACGCGTGTCTTATTCATTCATGCAGAGGATGTTCCTTGTCGTAGGATGTGGCTAAACCCAGGAGCAGACTGAACTTTGACAAGAGAACTTGTGAATTCTGACTAGATCCAATGCTGTGGTCAGATGTTGTAAATGCTTGTACAGATTTGTAATTTTG CAGTGT AAAAAATTAGTGAG                                                                                      ]
[+] EMBL AU097078             [                                                                                     CATGGAG TGAATAACAAGGTTGTCTTGCCCAACTGCAGCCATGCTATGTGCATGAAGTGTTACCGTCAATGGCGCTCAAGATCCCAGTCCTGCCCCTTCTGCCGTGACAGCCTCAAAAGAGTAAATTCTGGTGATCTGTGGATGCTCACAGATGACCGAGATGTCATTGACATGGCAACGATTACTAGAGAGANCCTTAGGCGCCTGTTTATGTACATTGAGAAGCTGCCTCTTGTTGCTCCGGACAACATCTTCTATGCCTATGATTCTCATGTAAAATAACCAGAGCTACTCATAATGACCTACTCATAATTGTTTTCGGAGAGTGACGCATGTCTTATTCATTCATGCAGAGGGTGTTCCTTGTCGTAGGATGTGGCTAACCCCAGGAGCAGACTGAACTTTGACAAGAGAACTTGTGAATTCTGACTAGATCCAATGCTGTGGTCAGATGTTGTAAATGCTTGTACAGATTTGTAA TTTG CAGTGTAAAAAAATTAGTGAGGAAAAACCTTGTGTTCCACATTGAACTCCTAGTGTGAAATTCCAAGTACATAAA        AAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU174221             [                                                                                                                                                                                                                                                                                                                                                                                                                                              gattntCATAGGATGTTCCTTGTCGTAGGATGTGGCTAACCCCAGGAGCAGACTGAACTTTGACAANAGAACTTGTGAATTNTGACTAGATCCAATGCTGTGGTCAGATGTTGTAAATGCTTGTACAGATTTGTAA TTTGCCAGTGTAAAAAAATTAGTGAGGAAAAACCTTGTGTTCCCCATTGAACTCCTAGTGTGAAATTCCAAGTACATATATGCTCNTTAAAAAAAAAAAAAAAAAAAA    ]




>consensus_9569#0
AGAGATACAGAAGAAGAGATGAGGATGAGAGCAAGAGGCATGTTTCTGAGATTGATGTCG
AGAGAGAGGAAGAGTGCGGGATTTGCATGGAGATGAATAACAAGGTTGTCTTGCCCAACT
GCAGCCATGCTATGTGCATGAAGTGTTACCGTCAATGGCGCTCAAGATCCCAGTCCTGCC
CCTTCTGCCGTGACAGCCTCAAAAGAGTAAATTCTGGTGATCTGTGGATGCTCACAGATG
ACCGAGATGTCATTGACATGGCAACGATTACTAGAGAGAACCTTAGGCGCCTGTTTATGT
ACATTGAGAAGCTGCCTCTTGTTGCTCCGGACAACATCTTCTATGCCTATGATTCTCATG
TAAAATAACCAGAGCTACTCATAATGACCTACTCATAATTGTTTTCGGAGAGTGACGCAT
GTCTTATTCATTCATGCAGAGGATGTTCCTTGTCGTAGGATGTGGCTAACCCCAGGAGCA
GACTGAACTTTGACAAGAGAACTTGTGAATTCTGACTAGATCCAATGCTGTGGTCAGATG
TTGTAAATGCTTGTACAGATTTGTAATTTGCAGTGTAAAAAAATTAGTGAGGAAAAACCT
TGTGTTCCACATTGAACTCCTAGTGTGAAATTCCAAGTACATAAAAAAAAAAAAAAAAAA
AAAAAAAAA

consensusID : consensus_9569#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 603
fasta sequence

                              [ACGAGACAAGGGGCATGTTTCTTAGATTGATGTCGAGAGAGAGGAAGAGTGCGGGATTTGCATGGAGATGAATAACAAGGTTGTTTTGCCCAACTGCAGCCATGCTATGTGCATGAAGTGTTACCGTCAATGGCGCTCAAGATTCCAGTCCTGCCCCTTTTGCCGTGACAGCCTCAAAAGAGTAAATTTTGGTGATCTGTGGATGCTCACAGATGACCGAGATGTCATTGACATGGCAACGATTACTAGAGAGAACCTTAGGCGCCTGTTTATGTACATTGAGAAGCTGCCTCTTGTTGCTCCGGACAACATTTTCTATGCCTATGATTTTCATGTAAAATAACCAGAGCTACTCATAATGACCTACTTATAATTGTTTTTGGAGAGTGACGCATGTGGTGTTCATTCATGCAGAGGATGTTCCTTGTTGTAGGATGTGGCTAAACCCAGGAGCAGACTGAACTTTGGCAAGAGAACTTGTGAATTTTGACTAGATCCAATGCTGTGGTCAGATGTTGTAAATGCTTGTACAGATTTGTAATTTGCAATGTAAAAAAATTAGTGAGGAAAAACCTTGTGTTCCCCCTTGAAAAAAAAAAAAAA]

[-] EMBL CA759852             [ACGAGACAAGGGGCATGTTTCTTAGATTGATGTCGAGAGAGAGGAAGAGTGCGGGATTTGCATGGAGATGAATAACAAGGTTGTTTTGCCCAACTGCAGCCATGCTATGTGCATGAAGTGTTACCGTCAATGGCGCTCAAGATTCCAGTCCTGCCCCTTTTGCCGTGACAGCCTCAAAAGAGTAAATTTTGGTGATCTGTGGATGCTCACAGATGACCGAGATGTCATTGACATGGCAACGATTACTAGAGAGAACCTTAGGCGCCTGTTTATGTACATTGAGAAGCTGCCTCTTGTTGCTCCGGACAACATTTTCTATGCCTATGATTTTCATGTAAAATAACCAGAGCTACTCATAATGACCTACTTATAATTGTTTTTGGAGAGTGACGCATGTGGTGTTCATTCATGCAGAGGATGTTCCTTGTTGTAGGATGTGGCTAAACCCAGGAGCAGACTGAACTTTGGCAAGAGAACTTGTGAATTTTGACTAGATCCAATGCTGTGGTCAGATGTTGTAAATGCTTGTACAGATTTGTAATTTGCAATGTAAAAAAATTAGTGAGGAAAAACCTTGTGTTCCCCCTTGAAAAAAAAAAAAAA]




>consensus_9569#1
ACGAGACAAGGGGCATGTTTCTTAGATTGATGTCGAGAGAGAGGAAGAGTGCGGGATTTG
CATGGAGATGAATAACAAGGTTGTTTTGCCCAACTGCAGCCATGCTATGTGCATGAAGTG
TTACCGTCAATGGCGCTCAAGATTCCAGTCCTGCCCCTTTTGCCGTGACAGCCTCAAAAG
AGTAAATTTTGGTGATCTGTGGATGCTCACAGATGACCGAGATGTCATTGACATGGCAAC
GATTACTAGAGAGAACCTTAGGCGCCTGTTTATGTACATTGAGAAGCTGCCTCTTGTTGC
TCCGGACAACATTTTCTATGCCTATGATTTTCATGTAAAATAACCAGAGCTACTCATAAT
GACCTACTTATAATTGTTTTTGGAGAGTGACGCATGTGGTGTTCATTCATGCAGAGGATG
TTCCTTGTTGTAGGATGTGGCTAAACCCAGGAGCAGACTGAACTTTGGCAAGAGAACTTG
TGAATTTTGACTAGATCCAATGCTGTGGTCAGATGTTGTAAATGCTTGTACAGATTTGTA
ATTTGCAATGTAAAAAAATTAGTGAGGAAAAACCTTGTGTTCCCCCTTGAAAAAAAAAAA
AAA

consensusID : consensus_9569#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 533
fasta sequence

                              [GTNCCGGGATTCTCCATGGAGGATGAATATACACAGGGTGTCTTTGCCCAACTCGCACCAATGCTATGTGCACATGAAGTGTTACCGTCAATGGCGCTCAAGATCCCACGTCCTGCCCCTTCTGCCGTGACCGCCTCCAAAGAGTAAATTCTGGTGATCTGTGGATGCTCACCACGATGACCGAGATGTCACTTGACCTGGCCAACGATTACTAGAGAGAACCTTAGGCNCCTGTTTATAGTACCTTGAGAAGCTGCCTCCTTGTTGCTCCGGACAAACAATCTTCTATGCCTATGATTCTCCATAGGATAGTTCCCTTGGTCGTAGGATGTGGCTAACCCCCGGACCCGACTGAACTTTGACCAGAGAACTTGTGAATTCTGACTAGATCCCATGCTGTGGTCAGATGTTGTAAATGCTTGTNCAGATTTGTAATTTCCCGTGTAAAAAAATTAGTGAGGAAAAACCCNTGTGTTCCCCCTTGAACTCCTAGTGTGAAATTCCCAGTACATATATGCTCCTTAAAAAAAAAA]

[+] EMBL BI807186             [GTNCCGGGATTCTCCATGGAGGATGAATATACACAGGGTGTCTTTGCCCAACTCGCACCAATGCTATGTGCACATGAAGTGTTACCGTCAATGGCGCTCAAGATCCCACGTCCTGCCCCTTCTGCCGTGACCGCCTCCAAAGAGTAAATTCTGGTGATCTGTGGATGCTCACCACGATGACCGAGATGTCACTTGACCTGGCCAACGATTACTAGAGAGAACCTTAGGCNCCTGTTTATAGTACCTTGAGAAGCTGCCTCCTTGTTGCTCCGGACAAACAATCTTCTATGCCTATGATTCTCCATAGGATAGTTCCCTTGGTCGTAGGATGTGGCTAACCCCCGGACCCGACTGAACTTTGACCAGAGAACTTGTGAATTCTGACTAGATCCCATGCTGTGGTCAGATGTTGTAAATGCTTGTNCAGATTTGTAATTTCCCGTGTAAAAAAATTAGTGAGGAAAAACCCNTGTGTTCCCCCTTGAACTCCTAGTGTGAAATTCCCAGTACATATATGCTCCTTAAAAAAAAAA]




>consensus_9569#2
GTNCCGGGATTCTCCATGGAGGATGAATATACACAGGGTGTCTTTGCCCAACTCGCACCA
ATGCTATGTGCACATGAAGTGTTACCGTCAATGGCGCTCAAGATCCCACGTCCTGCCCCT
TCTGCCGTGACCGCCTCCAAAGAGTAAATTCTGGTGATCTGTGGATGCTCACCACGATGA
CCGAGATGTCACTTGACCTGGCCAACGATTACTAGAGAGAACCTTAGGCNCCTGTTTATA
GTACCTTGAGAAGCTGCCTCCTTGTTGCTCCGGACAAACAATCTTCTATGCCTATGATTC
TCCATAGGATAGTTCCCTTGGTCGTAGGATGTGGCTAACCCCCGGACCCGACTGAACTTT
GACCAGAGAACTTGTGAATTCTGACTAGATCCCATGCTGTGGTCAGATGTTGTAAATGCT
TGTNCAGATTTGTAATTTCCCGTGTAAAAAAATTAGTGAGGAAAAACCCNTGTGTTCCCC
CTTGAACTCCTAGTGTGAAATTCCCAGTACATATATGCTCCTTAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9569#0      AGAGATACAGAAGAAGAGATGAGGATGAGAGCAAGAGGCATGTTTCTGAGATTGATGTCG 60
consensus_9569#1      ------------------------ACGAGA-CAAGGGGCATGTTTCTTAGATTGATGTCG 35
consensus_9569#2      ------------------------------------------------------------
                                                                                  

consensus_9569#0      AGAGAGAGGAAGAGTGCGGGATT-TGCATGGAG-ATGAATA---ACAAGGTTGTCTTGCC 115
consensus_9569#1      AGAGAGAGGAAGAGTGCGGGATT-TGCATGGAG-ATGAATA---ACAAGGTTGTTTTGCC 90
consensus_9569#2      ------------GTNCCGGGATTCTCCATGGAGGATGAATATACACAGGGTGTCTTTGCC 48
                                      ******* * ******* *******   *** ***    *****

consensus_9569#0      CAACT-GCAGCCATGCTATGTGCA--TGAAGTGTTACCGTCAATGGCGCTCAAGATCCCA 172
consensus_9569#1      CAACT-GCAGCCATGCTATGTGCA--TGAAGTGTTACCGTCAATGGCGCTCAAGATTCCA 147
consensus_9569#2      CAACTCGCACCAATGCTATGTGCACATGAAGTGTTACCGTCAATGGCGCTCAAGATCCCA 108
                      ***** *** * ************  ****************************** ***

consensus_9569#0      -GTCCTGCCCCTTCTGCCGTGACAGCCTCAAAAGAGTAAATTCTGGTGATCTGTGGATGC 231
consensus_9569#1      -GTCCTGCCCCTTTTGCCGTGACAGCCTCAAAAGAGTAAATTTTGGTGATCTGTGGATGC 206
consensus_9569#2      CGTCCTGCCCCTTCTGCCGTGACCGCCTCCAAAGAGTAAATTCTGGTGATCTGTGGATGC 168
                       ************ ********* ***** ************ *****************

consensus_9569#0      TCACA--GATGACCGAGATGTCA-TTGACATGGC-AACGATTACTAGAGAGAACCTTAGG 287
consensus_9569#1      TCACA--GATGACCGAGATGTCA-TTGACATGGC-AACGATTACTAGAGAGAACCTTAGG 262
consensus_9569#2      TCACCACGATGACCGAGATGTCACTTGACCTGGCCAACGATTACTAGAGAGAACCTTAGG 228
                      ****   **************** ***** **** *************************

consensus_9569#0      CGCCTGTTTAT-GTACATTGAGAAGCTGCCTC-TTGTTGCTCCGGACAAC--ATCTTCTA 343
consensus_9569#1      CGCCTGTTTAT-GTACATTGAGAAGCTGCCTC-TTGTTGCTCCGGACAAC--ATTTTCTA 318
consensus_9569#2      CNCCTGTTTATAGTACCTTGAGAAGCTGCCTCCTTGTTGCTCCGGACAAACAATCTTCTA 288
                      * ********* **** *************** ****************   ** *****

consensus_9569#0      TGCCTATGATTCTCATGTAAAATAACCAGAGCTACTCATAATGACCTACTCATAATTGTT 403
consensus_9569#1      TGCCTATGATTTTCATGTAAAATAACCAGAGCTACTCATAATGACCTACTTATAATTGTT 378
consensus_9569#2      TGCCTATGATTCTC-CATAGGATA------------------------------------ 311
                      *********** **   **  ***                                    

consensus_9569#0      TTCGGAGAGTGACGCATGTCTTATTCATTCATGCAGAGGATGTTCCTTGTCGTAGGATGT 463
consensus_9569#1      TTTGGAGAGTGACGCATGTGGTGTTCATTCATGCAGAGGATGTTCCTTGTTGTAGGATGT 438
consensus_9569#2      ----------------------GTTC-----------------CCTTGGTCGTAGGATGT 332
                                             ***                  * * ** *********

consensus_9569#0      GGCTAACCCCAGGAGCAGACTGAACTTTGACAAGAGAACTTGTGAATTCTGACTAGATCC 523
consensus_9569#1      GGCTAAACCCAGGAGCAGACTGAACTTTGGCAAGAGAACTTGTGAATTTTGACTAGATCC 498
consensus_9569#2      GGCTAACCCCCGGACCCGACTGAACTTTGACCAGAGAACTTGTGAATTCTGACTAGATCC 392
                      ****** *** *** * ************ * **************** ***********

consensus_9569#0      AATGCTGTGGTCAGATGTTGTAAATGCTTGTACAGATTTGTAATTTGCAGTGTAAAAAAA 583
consensus_9569#1      AATGCTGTGGTCAGATGTTGTAAATGCTTGTACAGATTTGTAATTTGCAATGTAAAAAAA 558
consensus_9569#2      CATGCTGTGGTCAGATGTTGTAAATGCTTGTNCAGATTTGTAATTTCCCGTGTAAAAAAA 452
                       ****************************** ************** *  **********

consensus_9569#0      TTAGTGAGGAAAAACC-TTGTGTTCCACATTGAACTCCTAGTGTGAAATTCCAAGTACAT 642
consensus_9569#1      TTAGTGAGGAAAAACC-TTGTGTTCCCCCTTGAAAAAAAAAAAAAA-------------- 603
consensus_9569#2      TTAGTGAGGAAAAACCCNTGTGTTCCCCCTTGAACTCCTAGTGTGAAATTCCCAGTACAT 512
                      ****************  ******** * *****     *     *              

consensus_9569#0      AAAAAAAAAAAAAAAAAAAAAAAAAAA 669
consensus_9569#1      ---------------------------
consensus_9569#2      ATATGCTCCTTAAAAAAAAAA------ 533