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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9571#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1426 fasta sequence
[TGCGCTTATCTGGCCTATCATCTGATCATCTACTGTCGGCTAGCTCGATCAGTAGCTGGGACCATAATTAATTTAAGTTAAGTTCAATCAAGAAGTCGAGAGGCGATGTCCTGGTGGAAGAAATCCAGCGGCAAAAGCAGCAGCAGCAGCAGCCAGTACTACGCTGGCTCTGACAGCT-CGTCGTTCGCCGGAGGAGGAGGAGACGACCGGTACGGACGAGCCGGCAGCGGCAACGGCCGCTCGCCGTGGACGACGTCCGAGGAGTACCCGAGGTACACCAGCGACGACGACAACCGCAGCGGCAGCGGCAGCGACGACGACGACGACCACGGCGACCGGAACAGGCGCAGGGGAAAGAAGAGCAACAAGAAGAAGAGCAGCAGCAGCAGCAGCAGCTACAAGTACGACGACGACGGCGGCGAGAGAGACCGGAGCTACAGCAACTACGGCGGCTACGGCAACAACGAGGGCTACAGCAGCAGCGCCCCCAGCGGCTACAACCCCTACAACAACGGCGGCGGCTACGGCGGCCCTTCCTACGGCAACGGCGGCGGCTACGGCGGCTCTACCTACGGCAACGGCGGCGGCTACGGCGGCTCTTCCTATGGTAACGGCGGCGCCATCGT--AGCCGGA--GGCGGCGGCGGCAGCGCCCCTGCCTCCTATGGCTATGGCTCTAATTCCGGCTGGGGTGCGCCGGCGCCGCCGCGGCAGGAGGGTGGCTCAGGGTCGGCGCCGACGTACCTCAACGTCATCTACATGACGCAGCCAGGGTCGTCGTCGTCGCAGAACGAGAACTCCGGCGAGAGGAGAGACAACGGCGGCGGCGGAGGAGGACGAAACGGGCTCTTCGGTCCGACGTTCCAAGCCGTCGGCGGCTATATGGACCGTAGGTTCGGATTCGACTGAGCCTGATAGATTCCTAAATTGCTTCAATTCAATTCGTCGATGTCTCCTCTCCGTTCTGCATCTCGATCGACTCCATCGATATCTACTGCAACTCTGCATGTGCACGCATGCATGCATGTTGGCACATACTTAATTCGTACGTACTCAAATTCTACAAGCGTTCGTTGGTTCAGTTAAGTTAAGTTATTATTCAGAAGAAATAATCACGGAAGGCCGCCAAATAATTTGTGGTAATGAGTGCTCGTGATTCTATAGTTTTGTTATTTTTTTTTCAACTGCCGAAGAAGTGTAAACCAGTAGTACCGGCTTTCCTGCTTCAAGGAAAAATGAAGTTGCTAATGTACTATATAGTATATACACATGTGGGTAGCTAGCTAGCTAGTATTGTGTTGTATAATTGTACTAGCCGGAGACTGTTTTTTGTGTTGTACTCTAGCTATCTGTATGCTGTGTGTATGTTCAGTGTGCTGCTGGCTAGCTACTCAATATGCTTCCATACTCCTGTAAAAAAAAAAAAAAA]
[+] EMBL AK106300 [TGCGCTTATCTGGCCTATCATCTGATCATCTACTGTCGGCTAGCTCGATCAGTAGCTGGGACCATAATTAATTTAAGTTAAGTTCAATCAAGAAGTCGAGAGGCGATGTCCTGGTGGAAGAAATCCAGCGGCAAAAGCAGCAGCAGCAGCAGCCAGTACTACGCTGGCTCTGACAGCT CGTCGTTCGCCGGAGGAGGAGGAGACGACCGGTACGGACGAGCCGGCAGCGGCAACGGCCGCTCGCCGTGGACGACGTCCGAGGAGTACCCGAGGTACACCAGCGACGACGACAACCGCAGCGGCAGCGGCAGCGACGACGACGACGACCACGGCGACCGGAACAGGCGCAGGGGAAAGAAGAGCAACAAGAAGAAGAGCAGCAGCAGCAGCAGCAGCTACAAGTACGACGACGACGGCGGCGAGAGAGACCGGAGCTACAGCAACTACGGCGGCTACGGCAACAACGAGGGCTACAGCAGCAGCGCCCCCAGCGGCTACAACCCCTACAACAACGGCGGCGGCTACGGCGGCCCTTCCTACGGCAACGGCGGCGGCTACGGCGGCTCTACCTACGGCAACGGCGGCGGCTACGGCGGCTCTTCCTATGGTAACGGCGGCGCCATCGT AGCCGGA GGCGGCGGCGGCAGCGCCCCTGCCTCCTATGGCTATGGCTCTAATTCCGGCTGGGGTGCGCCGGCGCCGCCGCGGCAGGAGGGTGGCTCAGGGTCGGCGCCGACGTACCTCAACGTCATCTACATGACGCAGCCAGGGTCGTCGTCGTCGCAGAACGAGAACTCCGGCGAGAGGAGAGACAACGGCGGCGGCGGAGGAGGACGAAACGGGCTCTTCGGTCCGACGTTCCAAGCCGTCGGCGGCTATATGGACCGTAGGTTCGGATTCGACTGAGCCTGATAGATTCCTAAATTGCTTCAATTCAATTCGTCGATGTCTCCTCTCCGTTCTGCATCTCGATCGACTCCATCGATATCTACTGCAACTCTGCATGTGCACGCATGCATGCATGTTGGCACATACTTAATTCGTACGTACTCAAATTCTACAAGCGTTCGTTGGTTCAGTTAAGTTAAGTTATTATTCAGAAGAAATAATCACGGAAGGCCGCCAAATAATTTGTGGTAATGAGTGCTCGTGATTCTATAGTTTTGTTATTTTTTTTTCAACTGCCGAAGAAGTGTAAACCAGTAGTACCGGCTTTCCTGCTTCAAGGAAAAATGAAGTTGCTAATGTACTATATAGTATATACACATGTGGGTAGCTAGCTAGCTAGTATTGTGTTGTATAATTGTACTAGCCGGAGACTGTTTTTTGTGTTGTACTCTAGCTATCTGTATGCTGTGTGTATGTTCAGTGTGCTGCTGGCTAGCTACTCAATATGCTTCC ]
[+] EMBL CA753774 [ CTACTGTCGGCTAGCTCGATCAGTAGCTGGGACCATAATTAATTTAAGTTAAGTTCAATCAAGAAGTCGAGAGGCGATGTCCTGGTGGAAGAAATCCAGCGGCAAAAGCAGCAGCAGCAGCAGCCAGTACTACGCTGGCTCTGACAGCT CGTCGTTCGCCGGAGGAGGAGGAGACGACCGGTACGGACGAGCCGGCAGCGGCAACGGCCGCTCGCCGTGGACGACGTCCGAGGAGTACCCGAGGTACACCAGCGACGACGACNACCGCAGCGGCAGCGGCAGCGACGACGACGACGACCACGGCGACCGGAACAGGCGCAGGGGAAAGAAGAGCAACAAGAAGAAGAGCAGCAGCAGCAGCAGCAGCTACCAGTACGACGACNACGGCGGCGAGAGAGACCGGAGCTACAGCAACTACGGCGGCTACGGCNACAACGAGGGCTACAGCAGCAGCGCCCCCAGCGGCTACCACCCCTACNACAACGGCGGCGGCTACGGCGGCCCTTCCTACGGCNACGGCGGCGGCTACGGCGGCTCTACCTACGGCNACGGCGGCGGCTACGGCGGCTCTTCCTATGGTAACGGCGGCGCCCTCGTTAACCCGAAAGGGGGGCGGCGGCAGCGCCCCTGCCTCCTATGGCTATGG ]
[+] EMBL C25923 [ CTACTGTCG GCTCGATCAGTAGCTGGGACCATAATTAATTTAAGTTAAGTTCAATCAAGAAGTCGAGAGGCGATGTCCTGGTGGAAGAAATCCAGCGGCAAAAGCAGCAGCAGCAGCAGCCAGTACTACGCTGGCTCTGACAGCTACGTCGTTCGCCGGAGGAGGAGGAGACGACCGGTACGGACGAGCCGGCAGCGGCAACGGCCGTTCGCCGTGGACGACGTNCGAGGAGTACCCGAGGTACACCAGCGACGACGACAACCGCAGCGG ]
[+] EMBL OSR3133A [ GACCATAATTAATTTAAGTTAAGTTCAATCAAGAAGTCGAGAGGCGATGTCCTGGTGGAAGAAATCCAGCGGCAAAAGCAGCAGCAGCAGCAGCCAGTACTACGCTGGCTCTGACAGCT CGTCGTTCGCCGGAGGAGGAGGAGACGACCGGTACGNACGAGCTGGCAGCGGCAACGGCCGTTCGCCGTGGACGACGTCCGAGGAGTACCCGAGGTACACCAGCNACGACGACAACCGCAGCGGCA CGNCAGCNACGACGACGACGACCACGGCGACCGGAACAGGCGCAGGGGAAAGANGAGC ]
[+] EMBL AU184611 [ CTGCAACTCTGCATGTGCACGCATGCATGCATGTTGGCACATACTTAATTCGTACGTACTCAAATTCTACAAGCGTTCGTTGGTTCAGTTAAGTTAAGTTATTATTCAGAAGAAATAATCACGGAAGGCCGCCAAATAATTTGTGGTAATGAGTGCTCGTGATTCTATAGTTTTGTTATTTTTTTTTCAACTGCCGAAGAAGTGTAAACCAGTAGTACCGGCTTTCCTGCTTCAAGGAAAAATGAAGTTGCTAATGTACTATATAGTATATACACATGTGGGTAGCTAGCTAGCTAGTATTGTGTTGTATAATTGTACTAGCCGGAGACTGTTTTTTGTGTTGTACTCTAGCTATCTGTATGCTGTGTGTATGTTCAGTGTGCTGCTGGCTAGCTACTCAATATGCTTCCATACTCCTGTAAAAAAAAAAAAAAA]
consensusID : consensus_9571#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 365 fasta sequence
[CCGCCAAATAATTTGTGGNAATGAGTGCTCGTGATTCTATAGTTTTGTTATTTTTNTTTCAACTGCCGAAGAAGTGTAAACCAGTAGTACCGGCTTTCCTGCTTCAAGGAAAAATGAAGTTGCTAATGTACTATATAGTATATACACATGTGGGTAGCTAGCTAGCTAGTATTGTGTTGTATAATTGTACTAGCCGGAGACTGTTTTTTGTGTTGTACTCTAGCTATCTGTATGCTGTGTGTATGTNCAGTGTGCTGCTGGCTAGCTACTCAATATGCTTCCATACTACTGTATTTAGTAAGTGTTTCTTCTGTTCATACATATTTGACACAGTTAACTTTAGTCATTACGTTTTGATCAAAAAA]
[+] EMBL AU100652 [CCGCCAAATAATTTGTGGNAATGAGTGCTCGTGATTCTATAGTTTTGTTATTTTTNTTTCAACTGCCGAAGAAGTGTAAACCAGTAGTACCGGCTTTCCTGCTTCAAGGAAAAATGAAGTTGCTAATGTACTATATAGTATATACACATGTGGGTAGCTAGCTAGCTAGTATTGTGTTGTATAATTGTACTAGCCGGAGACTGTTTTTTGTGTTGTACTCTAGCTATCTGTATGCTGTGTGTATGTNCAGTGTGCTGCTGGCTAGCTACTCAATATGCTTCCATACTACTGTATTTAGTAAGTGTTTCTTCTGTTCATACATATTTGACACAGTTAACTTTAGTCATTACGTTTTGATCAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9571#0 TGCGCTTATCTGGCCTATCATCTGATCATCTACTGTCGGCTAGCTCGATCAGTAGCTGGG 60
consensus_9571#1 ------------------------------------------------------------
consensus_9571#0 ACCATAATTAATTTAAGTTAAGTTCAATCAAGAAGTCGAGAGGCGATGTCCTGGTGGAAG 120
consensus_9571#1 ------------------------------------------------------------
consensus_9571#0 AAATCCAGCGGCAAAAGCAGCAGCAGCAGCAGCCAGTACTACGCTGGCTCTGACAGCTCG 180
consensus_9571#1 ------------------------------------------------------------
consensus_9571#0 TCGTTCGCCGGAGGAGGAGGAGACGACCGGTACGGACGAGCCGGCAGCGGCAACGGCCGC 240
consensus_9571#1 ------------------------------------------------------------
consensus_9571#0 TCGCCGTGGACGACGTCCGAGGAGTACCCGAGGTACACCAGCGACGACGACAACCGCAGC 300
consensus_9571#1 ------------------------------------------------------------
consensus_9571#0 GGCAGCGGCAGCGACGACGACGACGACCACGGCGACCGGAACAGGCGCAGGGGAAAGAAG 360
consensus_9571#1 ------------------------------------------------------------
consensus_9571#0 AGCAACAAGAAGAAGAGCAGCAGCAGCAGCAGCAGCTACAAGTACGACGACGACGGCGGC 420
consensus_9571#1 ------------------------------------------------------------
consensus_9571#0 GAGAGAGACCGGAGCTACAGCAACTACGGCGGCTACGGCAACAACGAGGGCTACAGCAGC 480
consensus_9571#1 ------------------------------------------------------------
consensus_9571#0 AGCGCCCCCAGCGGCTACAACCCCTACAACAACGGCGGCGGCTACGGCGGCCCTTCCTAC 540
consensus_9571#1 ------------------------------------------------------------
consensus_9571#0 GGCAACGGCGGCGGCTACGGCGGCTCTACCTACGGCAACGGCGGCGGCTACGGCGGCTCT 600
consensus_9571#1 ------------------------------------------------------------
consensus_9571#0 TCCTATGGTAACGGCGGCGCCATCGTAGCCGGAGGCGGCGGCGGCAGCGCCCCTGCCTCC 660
consensus_9571#1 ------------------------------------------------------------
consensus_9571#0 TATGGCTATGGCTCTAATTCCGGCTGGGGTGCGCCGGCGCCGCCGCGGCAGGAGGGTGGC 720
consensus_9571#1 ------------------------------------------------------------
consensus_9571#0 TCAGGGTCGGCGCCGACGTACCTCAACGTCATCTACATGACGCAGCCAGGGTCGTCGTCG 780
consensus_9571#1 ------------------------------------------------------------
consensus_9571#0 TCGCAGAACGAGAACTCCGGCGAGAGGAGAGACAACGGCGGCGGCGGAGGAGGACGAAAC 840
consensus_9571#1 ------------------------------------------------------------
consensus_9571#0 GGGCTCTTCGGTCCGACGTTCCAAGCCGTCGGCGGCTATATGGACCGTAGGTTCGGATTC 900
consensus_9571#1 ------------------------------------------------------------
consensus_9571#0 GACTGAGCCTGATAGATTCCTAAATTGCTTCAATTCAATTCGTCGATGTCTCCTCTCCGT 960
consensus_9571#1 ------------------------------------------------------------
consensus_9571#0 TCTGCATCTCGATCGACTCCATCGATATCTACTGCAACTCTGCATGTGCACGCATGCATG 1020
consensus_9571#1 ------------------------------------------------------------
consensus_9571#0 CATGTTGGCACATACTTAATTCGTACGTACTCAAATTCTACAAGCGTTCGTTGGTTCAGT 1080
consensus_9571#1 ------------------------------------------------------------
consensus_9571#0 TAAGTTAAGTTATTATTCAGAAGAAATAATCACGGAAGGCCGCCAAATAATTTGTGGTAA 1140
consensus_9571#1 ---------------------------------------CCGCCAAATAATTTGTGGNAA 21
****************** **
consensus_9571#0 TGAGTGCTCGTGATTCTATAGTTTTGTTATTTTTTTTTCAACTGCCGAAGAAGTGTAAAC 1200
consensus_9571#1 TGAGTGCTCGTGATTCTATAGTTTTGTTATTTTTNTTTCAACTGCCGAAGAAGTGTAAAC 81
********************************** *************************
consensus_9571#0 CAGTAGTACCGGCTTTCCTGCTTCAAGGAAAAATGAAGTTGCTAATGTACTATATAGTAT 1260
consensus_9571#1 CAGTAGTACCGGCTTTCCTGCTTCAAGGAAAAATGAAGTTGCTAATGTACTATATAGTAT 141
************************************************************
consensus_9571#0 ATACACATGTGGGTAGCTAGCTAGCTAGTATTGTGTTGTATAATTGTACTAGCCGGAGAC 1320
consensus_9571#1 ATACACATGTGGGTAGCTAGCTAGCTAGTATTGTGTTGTATAATTGTACTAGCCGGAGAC 201
************************************************************
consensus_9571#0 TGTTTTTTGTGTTGTACTCTAGCTATCTGTATGCTGTGTGTATGTTCAGTGTGCTGCTGG 1380
consensus_9571#1 TGTTTTTTGTGTTGTACTCTAGCTATCTGTATGCTGTGTGTATGTNCAGTGTGCTGCTGG 261
********************************************* **************
consensus_9571#0 CTAGCTACTCAATATGCTTCCATACTCCTGTAAAAAAAAAAAAAAA-------------- 1426
consensus_9571#1 CTAGCTACTCAATATGCTTCCATACTACTGTATTTAGTAAGTGTTTCTTCTGTTCATACA 321
************************** ***** * **
consensus_9571#0 --------------------------------------------
consensus_9571#1 TATTTGACACAGTTAACTTTAGTCATTACGTTTTGATCAAAAAA 365
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||