cluster # 9577

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Oryza sativa
cluster # 9577 cluster # 9577 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9577#0 length = 936 sequences # 4

consensus_9577#1 length = 349 sequences # 1
consensus_9577#2 length = 195 sequences # 1

consensusID : consensus_9577#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 936
fasta sequence

                              [GGGCTGGAGGAATTCGGCACGAGTATAAATCCCACACGCGTCCTCCTCCTCCTAATAAACTCCTCCAATTCCTCGACGAATCAGTTTTCTCCTCTGATTTTCCACCACAAGATCTCTAGTTTCTTTGATTTCTTGATCAGACGACGATGGGAGGGAGCAAGGATGAGCAGCAAGACAGGGGGCTCTTCTCCAACCTGATGCACGGCGTCGCCGGCG-GCGGCGGCGGCCA-TGGCTATCCGTACCCTCCTCAGCAGGGGTACTACCCGCCGCCGCCCACCGCGTATCCTCCTCCTCCTCCGGCGGGGTACGGCGGCGGCT-ATGGCTA-CCCTCC-TGCAGG-TTACCCC--GGCTCGTCC-GCGCCATT-CCAACACGGTAACCATGGCGGAGGAAACATGGGGATGCTAGCTGCAGGTGCAGCCGCTGCCGCGGCGGCGTAC-GGCGCGC-AC-AAGCTTTCCCACGGTCATGGCCATG-GAGGCTACGGCTACGG-TGGCCACCACGGCGGCCTCTTCGGCGGTCACCATGGCCACCACGGCGGCTTGTTTGGAGGCCATCACGGACACCACGGCGGCGGCCTCTTCGGCGGCCACCACGGCCACCATGGCGGCTTGTTTGGCGGTCACCACGGCTTCGGTGGCCACCACGGACACCATGGCCACCATTGATGGTGATCACCATATCGTGTTGCACGGCGTGTTCAATCAGTGCGAGTGATAAGATGATCATGAGTTGGTTTGATTATACTACTATAAACTCGATATGTGTATATAGTTTTTTCTACTTAGTTTGCTACTCTAGATTGTATCTGAGACACTGATATGAGTGATAATATGGTTTGATGATTAGTAACCGACTGTCAATCAGTGTTTGATCCCTGTTTTTACTGTGCTGATACCCCCACGTTTTTTATCGGAGAGTGGGTTCTAATTTCTTGAAGGAATG]

[+] EMBL BE039188             [GGGCTGGAGGAATTCGGCACGAGTATAAATCCCACACGCGTCCTCCTCCTCCTAATAAACTCCTCCAATTCCTCGACGAATCAGTTTTCTCCTCTGATTTTCCACCACAAGATCTCTAGTTTCTTTGATTTCTTGATCAGACGACGATGGGAGGGAGCAAGGATGAGCAGCAAGACAGGGGGCTCTTCTCCAACCTGATGCACGGCGTCGCCGGCG GCGGCGGCGGCCA TGGCTATCCGTACCCTCCTCAGCAGGGGTACTACCCGCCGCCGCCCACCGCGTATCCTCCTCCTCCTCCGGCGGGGTACGGCGGCGGCT ATGGCTA CCCTCC TGCAGG TTACCCC  GGCTCGTCC GCGCCATT CCAACACGGTAACCATGGCGGAGGAAACATGGGGATGCTAGCTGCAGGTGCAGCCGCTGCCGCGGCGGCGTAC GGCGCGC AC AAGCTTTCCCACGGTCATGGCCATG GAGGCTACGGCTACGG TGGGCACCACGGCGGGCTCTTCGGCGGTCACCATGGCCACCACGGCGGCTTGTTTGGAGGCCATC                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AK067943             [                                                                                          CCTCTGATTTTCCACCACAAGATCTCTAGTTTCTTTGATTTCTTGATCAGACGACGATGGGAGGGAGCAAGGATGAGCAGCAAGACAGGGGGCTCTTCTCCAACCTGATGCACGGCGTCGCCGGCG GCGGCGGCGGCCA TGGCTATCCGTACCCTCCTCAGCAGGGGTACTACCCGCCGCCGCCCACCGCGTATCCTCCTCCTCCTCCGGCGGGGTACGGCGGCGGCT ATGGCTA CCCTCC TGCAGG TTACCCC  GGCTCGTCC GCGCCATT CCAACACGGTAACCATGGCGGAGGAAACATGGGGATGCTAGCTGCAGGTGCAGCCGCTGCCGCGGCGGCGTAC GGCGCGC AC AAGCTTTCCCACGGTCATGGCCATG GAGGCTACGGCTACGG TGGCCACCACGGCGGCCTCTTCGGCGGTCACCATGGCCACCACGGCGGCTTGTTTGGAGGCCATCACGGACACCACGGCGGCGGCCTCTTCGGCGGCCACCACGGCCACCATGGCGGCTTGTTTGGCGGTCACCACGGCTTCGGTGGCCACCACGGACACCATGGCCACCATTGATGGTGATCACCATATCGTGTTGCACGGCGTGTTCAATCAGTGCGAGTGATAAGATGATCATGAGTTGGTTTGATTATACTACTATAAACTCGATATGTGTATATAGTTTTTTCTACTTAGTTTGCTACTCTAGATTGTATCTGAGACACTGATATGAGTGATAATATGGTTTGATGATTAGTAACCGACTGTCAATCAGTGTTTGATCCCTGTTTTTACTGTGCTGATACCCCCACGTTTTTTATCGGAGAGTGGGTTCTAATTTCTTGAAGGAATG]
[+] EMBL C27893               [                                                                                                                    TAGTTTCTTTGATTTCTTGATCAGACGACGATGGGAGGGAGCAAGGATGAGCAGCAAGACAGGGGGCTCTTCTCCAACCTGATGCACGGCGTCGC  GCGNGC GCGGCGCNCATTGGCTATCCGTACCCTCCTCAGCAGGGGTACTACCCGCCGCCGCCCACCGCGTATCCTCCTCCTCCTCCGGCGGGGTACGGCGGCGGCT ATGGCTA CCCTCC TGCAGG TTACCCC  GGCTCGTCC GCGCCATT CCAACACGGTAACCATGGCGGAGGAAACATGGGGATGCTAGCTGCAGGTGCAGCNGCTGCCGCGGCGG TTACNGGCG GCAACAAAGCTTTCCCACGGTCATGGCCATG GAGGCTACGGCTACGGTTAGCCAACACGGCNGCCTCTTCGGCGGT AACATTGGCAACACGGCNGCTTTTTTTGAGGCataag                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU100898             [                                                                                                                                                                                                                                                                                                                  gncCGGCCG GGCTAATGGCTACCCCTCCTTGCAGGTTTACCCCCGGGTTCGTCCGGCGCCATTCCCAACACGGTACCCATGGCGAAGAAAACATGGGAATGCTAGCTGCAGGTGCAGCCGCTNCCGCGNCGGCGTAC GGCGCGC AC AAGCTTTCCCACGGTCATGGCCATGNAAGGCTACGGNTACGG TGGCCACCACGGCGGCCTCTTCGGCGGTCACCATGGCCACCACGGCGGCTTGTTTGGAGGCCATCACGGACACCACGGCGGCGGCCTCTTCGGCGGCCACCACGGCCACCATGGCGGCTTGTTTGGCGGTCACCACGGCTTCGGTGGCCACCACGGACACCATGGCCACCATTGATGGTGATCACCATATCGTGTTGCACGGCGTGTTCAATCAGTGCGAGTGATAAGATGATCATGAGTTGGTTTGATTATACTACTATAAACTCGATATGTGTATATAGTTTTTTCTACTTAGTTTGCTACTCTAGATTGTATCTGAGACACTGATATGAGTGATAATATGGTTTGATGATTAGTAACCGACTGTCAATCAGTGTTTGATCCCTGTTTTTACTGTGCTGATACCCCCACGTTTTTaaaaaaa                            ]




>consensus_9577#0
GGGCTGGAGGAATTCGGCACGAGTATAAATCCCACACGCGTCCTCCTCCTCCTAATAAAC
TCCTCCAATTCCTCGACGAATCAGTTTTCTCCTCTGATTTTCCACCACAAGATCTCTAGT
TTCTTTGATTTCTTGATCAGACGACGATGGGAGGGAGCAAGGATGAGCAGCAAGACAGGG
GGCTCTTCTCCAACCTGATGCACGGCGTCGCCGGCGGCGGCGGCGGCCATGGCTATCCGT
ACCCTCCTCAGCAGGGGTACTACCCGCCGCCGCCCACCGCGTATCCTCCTCCTCCTCCGG
CGGGGTACGGCGGCGGCTATGGCTACCCTCCTGCAGGTTACCCCGGCTCGTCCGCGCCAT
TCCAACACGGTAACCATGGCGGAGGAAACATGGGGATGCTAGCTGCAGGTGCAGCCGCTG
CCGCGGCGGCGTACGGCGCGCACAAGCTTTCCCACGGTCATGGCCATGGAGGCTACGGCT
ACGGTGGCCACCACGGCGGCCTCTTCGGCGGTCACCATGGCCACCACGGCGGCTTGTTTG
GAGGCCATCACGGACACCACGGCGGCGGCCTCTTCGGCGGCCACCACGGCCACCATGGCG
GCTTGTTTGGCGGTCACCACGGCTTCGGTGGCCACCACGGACACCATGGCCACCATTGAT
GGTGATCACCATATCGTGTTGCACGGCGTGTTCAATCAGTGCGAGTGATAAGATGATCAT
GAGTTGGTTTGATTATACTACTATAAACTCGATATGTGTATATAGTTTTTTCTACTTAGT
TTGCTACTCTAGATTGTATCTGAGACACTGATATGAGTGATAATATGGTTTGATGATTAG
TAACCGACTGTCAATCAGTGTTTGATCCCTGTTTTTACTGTGCTGATACCCCCACGTTTT
TTATCGGAGAGTGGGTTCTAATTTCTTGAAGGAATG

consensusID : consensus_9577#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 349
fasta sequence

                              [TTTTACTATTCTAATCAGCAACTCCAACCGATCCACTAATTACACGTCAGCTTGCTTAGCCGCGTCGCGCTGCTCTGCTTGATCATCATCACCTTCTCCGATCGATCCTCCTCGACGCCGCCCACAAATATAAATCCCACACGCGTCCTCCTCCTCCTAATAAACTCCTCCAATTCCTCGACGAATCAGTTTTCTCCTCTGATTTTCCACCACAAGATCTCTAGTTTCTTTGATTTCTTGATCAGACGNCGATGGGAGGGAGGCAAGGATGAGGCAGCAAGACAGGGGGTCTTTCTTCCAACCTGATGCACGGCGTCGCNCGCGGGGGCGGGCGGGCCATGGNTATTCC]

[+] EMBL OSC209               [TTTTACTATTCTAATCAGCAACTCCAACCGATCCACTAATTACACGTCAGCTTGCTTAGCCGCGTCGCGCTGCTCTGCTTGATCATCATCACCTTCTCCGATCGATCCTCCTCGACGCCGCCCACAAATATAAATCCCACACGCGTCCTCCTCCTCCTAATAAACTCCTCCAATTCCTCGACGAATCAGTTTTCTCCTCTGATTTTCCACCACAAGATCTCTAGTTTCTTTGATTTCTTGATCAGACGNCGATGGGAGGGAGGCAAGGATGAGGCAGCAAGACAGGGGGTCTTTCTTCCAACCTGATGCACGGCGTCGCNCGCGGGGGCGGGCGGGCCATGGNTATTCC]




>consensus_9577#1
TTTTACTATTCTAATCAGCAACTCCAACCGATCCACTAATTACACGTCAGCTTGCTTAGC
CGCGTCGCGCTGCTCTGCTTGATCATCATCACCTTCTCCGATCGATCCTCCTCGACGCCG
CCCACAAATATAAATCCCACACGCGTCCTCCTCCTCCTAATAAACTCCTCCAATTCCTCG
ACGAATCAGTTTTCTCCTCTGATTTTCCACCACAAGATCTCTAGTTTCTTTGATTTCTTG
ATCAGACGNCGATGGGAGGGAGGCAAGGATGAGGCAGCAAGACAGGGGGTCTTTCTTCCA
ACCTGATGCACGGCGTCGCNCGCGGGGGCGGGCGGGCCATGGNTATTCC

consensusID : consensus_9577#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 195
fasta sequence

                              [TGATGGTGATCACCATATCGTGTTGCACGGCGTGTTCACATCAGTGCGAGTGATAAGATGATCATGAGTTGGTTTGATTATACTACTATAAACCTCGATATGTGTATATAGTTTTTTCTACTTAGTTTGCTACTCTAGATTGTATCTGAGACACTGATATGAGTGATAATATGGTTTGATGATTTAAAAAAAAAA]

[+] EMBL BM037970             [TGATGGTGATCACCATATCGTGTTGCACGGCGTGTTCACATCAGTGCGAGTGATAAGATGATCATGAGTTGGTTTGATTATACTACTATAAACCTCGATATGTGTATATAGTTTTTTCTACTTAGTTTGCTACTCTAGATTGTATCTGAGACACTGATATGAGTGATAATATGGTTTGATGATTTAAAAAAAAAA]




>consensus_9577#2
TGATGGTGATCACCATATCGTGTTGCACGGCGTGTTCACATCAGTGCGAGTGATAAGATG
ATCATGAGTTGGTTTGATTATACTACTATAAACCTCGATATGTGTATATAGTTTTTTCTA
CTTAGTTTGCTACTCTAGATTGTATCTGAGACACTGATATGAGTGATAATATGGTTTGAT
GATTTAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9577#0      GGGCTGGAGGAATTCGGCACGAGTATAAATCCCACACGCGTCCTCCTCCTCCTAATAAAC 60
consensus_9577#2      ------------------------------------------------------------
consensus_9577#1      ------------------------------------------------------------
                                                                                  

consensus_9577#0      TCCTCCAATTCCTCGACGAATCAGTTTTCTCCTCTGATTTTCCACCACAAGATCTCTAGT 120
consensus_9577#2      ------------------------------------------------------------
consensus_9577#1      ------------------------------------------------------------
                                                                                  

consensus_9577#0      TTCTTTGATTTCTTGATCAGACGACGATGGGAGGGAGCAAGGATGAGCAGCAAGACAGGG 180
consensus_9577#2      ------------------------------------------------------------
consensus_9577#1      ------------------------------------------------------------
                                                                                  

consensus_9577#0      GGCTCTTCTCCAACCTGATGCACGGCGTCGCCGGCGGCGGCGGCGGCCATGGCTATCCGT 240
consensus_9577#2      ------------------------------------------------------------
consensus_9577#1      ------------------------------------------------------------
                                                                                  

consensus_9577#0      ACCCTCCTCAGCAGGGGTACTACCCGCCGCCGCCCACCGCGTATCCTCCTCCTCCTCCGG 300
consensus_9577#2      ------------------------------------------------------------
consensus_9577#1      ------------------------------------------------------------
                                                                                  

consensus_9577#0      CGGGGTACGGCGGCGGCTATGGCTACCCTCCTGCAGGTTACCCCGGCTCGTCCGCGCCAT 360
consensus_9577#2      ------------------------------------------------------------
consensus_9577#1      ------------------------------------------------------------
                                                                                  

consensus_9577#0      TCCAACACGGTAACCATGGCGGAGGAAACATGGGGATGCTAGCTGCAGGTGCAGCCGCTG 420
consensus_9577#2      ------------------------------------------------------------
consensus_9577#1      ------------------------------------------------------------
                                                                                  

consensus_9577#0      CCGCGGCGGCGTACGGCGCGCACAAGCTTTCCCACGGTCATGGCCATGGAGGCTACGGCT 480
consensus_9577#2      ------------------------------------------------------------
consensus_9577#1      ------------------------------------------------------------
                                                                                  

consensus_9577#0      ACGGTGGCCACCACGGCGGCCTCTTCGGCGGTCACCATGGCCACCACGGCGGCTTGTTTG 540
consensus_9577#2      ------------------------------------------------------------
consensus_9577#1      ------------------------------------------------------------
                                                                                  

consensus_9577#0      GAGGCCATCACGGACACCACGGCGGCGGCCTCTTCGGCGGCCACCACGGCCACCATGGCG 600
consensus_9577#2      ------------------------------------------------------------
consensus_9577#1      ------------------------------------------------------------
                                                                                  

consensus_9577#0      GCTTGTTTGGCGGTCACCACGGCTTCGGTGGCCACCACGGACACCATGGCCACCATTGAT 660
consensus_9577#2      --------------------------------------------------------TGAT 4
consensus_9577#1      ----------TTTTACTATTCTAATCAGCAACTCCAACCGATCCACTAATTACACGTCAG 50
                                                                              * * 

consensus_9577#0      GGTGATCA-CCATATCGTGTTGCACGGCGTGTTCA--ATCAG----TGCGAGTGAT---- 709
consensus_9577#2      GGTGATCA-CCATATCGTGTTGCACGGCGTGTTCAC-ATCAG----TGCGAGTGAT---- 54
consensus_9577#1      CTTGCTTAGCCGCGTCGCGCTGCTCTGCTTGATCATCATCACCTTCTCCGATCGATCCTC 110
                        ** * * **   *** * *** * ** ** ***  ****     * ***  ***    

consensus_9577#0      ----AAGATGATCATGAGT-TGGTTTGATTATAC-TACTATAAAC-TCGATATGTGTATA 762
consensus_9577#2      ----AAGATGATCATGAGT-TGGTTTGATTATAC-TACTATAAACCTCGATATGTGTATA 108
consensus_9577#1      CTCGACGCCGCCCACAAATATAAATCCCACACGCGTCCTCCTCCTCCTAATAAACTCCTC 170
                          * *  *  **  * * *   *     *  * * **          ***      * 

consensus_9577#0      TAGTTTTTT--CTACTTAGTTTGCTACTCTAGATTGTATCTGAGACA---CTGATATGAG 817
consensus_9577#2      TAGTTTTTT--CTACTTAGTTTGCTACTCTAGATTGTATCTGAGACA---CTGATATGAG 163
consensus_9577#1      CAATTCCTCGACGAATCAGTTTTCTCCTCTGATTTTCCACCACAAGATCTCTAGTTTCTT 230
                       * **  *   * * * ***** ** ****   **    *    * *   **  * *   

consensus_9577#0      TGATAATATGGTTTGATGATTAGTAACCGACTGTCAATCAGTGTTTGATCCCTGTTTTTA 877
consensus_9577#2      TGATAATATGGTTTGATGATTTAAAAAAAAAA---------------------------- 195
consensus_9577#1      TGATTTCTTGATCAGACGNCGATGGGAGGGAGGCAAGGATGAGGCAGCAAGACAGGGGGT 290
                      ****    ** *  ** *                                          

consensus_9577#0      CTGTGCTGATACCCCCACGTTTTTTATCGGAGAGTGGGTTCTAATTTCTTGAAGGAATG 936
consensus_9577#2      -----------------------------------------------------------
consensus_9577#1      CTTTCTTCCAACCTGATGCACGGCGTCGCNCGCGGGGGCGGGCGGGCCATGGNTATTCC 349