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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9582#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1366 fasta sequence
[TATCCTCCTAGAGAGGGACATGGGGAGAGGAGGAGTGGATCCACGATGATGACGAGGAGCATGATGAAGTTTTTCTCTCCCTCCTCCTCCGCTATTTATACCACCCTCTCCTCTCGTCTCGCCAGGATCAACGCCACTCGCCACACACCGCCACCACCACCAAAGAGCAGCAGAGCAGCAAGATCACTAACCTCTTTCTTGCTGATTCGAGCAACCATGTCTTCTTCGTCTTCGTCGTCGGATGCTGTCGCCGCGGCGGCGGCGG-CGAC-TTTTGAGAAGCCGAGGACGGTGGTGAAGAAGCTCCTGGCGGAGTCCCAGCCCGAGGGCGACGGCGCCACCGTGCGAAGGAGCATCGGCAGGTACGAGCTCAGGAACCTGGATCCTTTCCTCATGCTCGATGAATTCTCTGTTTCCAAGCCTGCTGGATTTCCCGACCATCCGCATAGAGGATTCGAGACAGTCACCTACATGCTCGAAGGGGCGTTCACCCACCAAGACTTTGCAGGCCACAAGGGCACCATCGGCACGGGAGATGTCCAGTGGATGACGGCTGGCCGCGGCATCGTGCACTCGGAGATGCCGGCAGCGGACGGTGTGCAGAAGGGCCTCCAGCTCTGGATCAACCTCTCTTCCAAGGACAAAATGATTGAGCCGAGGTACCAGGAGCTTATGAGCAAGGACATCAGCTGCGCCGAGAAGGACGGCGTGGAGGTGAAGATCATCGCCGGCGAGGCCTTCGGGGTGCGTTCGCCGGTGTACACGCGGACGCCGACGATGTACATGGACTTCACGATGCAGCCGGGGTCGCAGCTGCACCAGCCCATCCCGGAGGCCTGGAACGCCTTCGTCTACATCATCGACGGCGAGGGCGTGTTCGGGAGGGAGAAGGCGTCGCCGGCGACCGCCCACCACTGCCTCGTTCTCGGCCCCGGCGACGGCCTGAGCGTCTGGAATAAGTCCGGCGAGCCGCTCCGGTTCGCGCTCGTCGGCGGGCAGCCGCTCAACGAGCCCGTGGTGCAGCATGGCCCCTTCGTGATGAACACCCGCGCCGAGATCCAGCAGGCCATGGAGGATTACTACTATGGCAGGAATGGCTTCGAGAAGGCCCGCCATTGGAGCTCCACAGCATGATTTCATCATCCTCCCTTCATACCATGACACACCATCACCATACATAATGCTGCTGAGCTGAACATGATGCTGTTTTTAGGCATATTAGTATATCATTTGATTC-AGTAATAATAAATAGGTTTATTGTCATAAATTTTTCCTTGATTGGCTGTGTAATAAAACGATATCTGTGCAATGAAAATGGTAGTAATATGATTGGATTTTAAAAAAAACTGCACAACAGATTATGCAAAAA]
[+] EMBL AK105971 [TATCCTCCTAGAGAGGGACATGGGGAGAGGAGGAGTGGATCCACGATGATGACGAGGAGCATGATGAAGTTTTTCTCTCCCTCCTCCTCCGCTATTTATACCACCCTCTCCTCTCGTCTCGCCAGGATCAACGCCACTCGCCACACACCGCCACCACCACCAAAGAGCAGCAGAGCAGCAAGATCACTAACCTCTTTCTTGCTGATTCGAGCAACCATGTCTTCTTCGTCTTCGTCGTCGGATGCTGTCGCCGCGGCGGCGGCGG CGAC TTTTGAGAAGCCGAGGACGGTGGTGAAGAAGCTCCTGGCGGAGTCCCAGCCCGAGGGCGACGGCGCCACCGTGCGAAGGAGCATCGGCAGGTACGAGCTCAGGAACCTGGATCCTTTCCTCATGCTCGATGAATTCTCTGTTTCCAAGCCTGCTGGATTTCCCGACCATCCGCATAGAGGATTCGAGACAGTCACCTACATGCTCGAAGGGGCGTTCACCCACCAAGACTTTGCAGGCCACAAGGGCACCATCGGCACGGGAGATGTCCAGTGGATGACGGCTGGCCGCGGCATCGTGCACTCGGAGATGCCGGCAGCGGACGGTGTGCAGAAGGGCCTCCAGCTCTGGATCAACCTCTCTTCCAAGGACAAAATGATTGAGCCGAGGTACCAGGAGCTTATGAGCAAGGACATCAGCTGCGCCGAGAAGGACGGCGTGGAGGTGAAGATCATCGCCGGCGAGGCCTTCGGGGTGCGTTCGCCGGTGTACACGCGGACGCCGACGATGTACATGGACTTCACGATGCAGCCGGGGTCGCAGCTGCACCAGCCCATCCCGGAGGCCTGGAACGCCTTCGTCTACATCATCGACGGCGAGGGCGTGTTCGGGAGGGAGAAGGCGTCGCCGGCGACCGCCCACCACTGCCTCGTTCTCGGCCCCGGCGACGGCCTGAGCGTCTGGAATAAGTCCGGCGAGCCGCTCCGGTTCGCGCTCGTCGGCGGGCAGCCGCTCAACGAGCCCGTGGTGCAGCATGGCCCCTTCGTGATGAACACCCGCGCCGAGATCCAGCAGGCCATGGAGGATTACTACTATGGCAGGAATGGCTTCGAGAAGGCCCGCCATTGGAGCTCCACAGCATGATTTCATCATCCTCCCTTCATACCATGACACACCATCACCATACATAATGCTGCTGAGCTGAACATGATGCTGTTTTTAGGCATATTAGTATATCATTTGATTC AGTAATAATAAATAGGTTTATTGTCATAAATTTTTCCTTGATTGGCTGTGTAATAAAACGATATCTGTGCAATGAAAATGGTAGTAATATG ]
[+] EMBL OSS0751A [ TGATGACGAGGAGCATGATGAAGTTTTTCTCTCCCTCCTCCTCCGCTATTTATACCACCCTCTCCTCTCGTCTCGCCAGGATCAACGCCACTCGCCACACACCGCCACCACCACCAAAGAGCAGCAGAGCAGCAAGATCACTAACCTCTTTCTTGCTGATTCGAGCAACCATGTCTTCTTCGTCTTCGTCGTCGGATGCTGTAGCCGCGGCGGC GCGGACGACTTTTTGAGAAGCCGAGGACGGTGGTGAAGAAGCTCCTGGCGGAGTCCCAGCCC ]
[+] EMBL CB677094 [ ACGATGCTGCCGGGGTCGCAGCTGCACCAGCCCATCCCGGAGGCCTGGAACGCCTTCGTCTACATCATCGACGGCGAGGGCGTGTTCGGGAGGGAGAAGGCGTCGCCGGCGACCGCCCACCACTGCCTCGTTCTCGGCCCCGGCGACGGCCTGAGCGTCTGGAATAAGTCCGGCGAGCCGCTCCGGTTCGCGCTCGTCGGCGGGCAGCCGCTCAACGAGCCCGTGGTGCAGCATGGCCCCTTCGTGATGAACACCCGCGCCGAGATCCAGCAGGCCATGGAGGATTACTACTATGGCAGGAATGGCTTCGAGAAGGCCCGCCATTGGAGCTCCACAGCATGATTTCATCATCCTCCCTTCATACCATGACACACCATCACCATACATAATGCTGCTGAGCTGAACATGATGCTGTTTTTAGGCATATTAGTATATCATTTGATTC AGTAATAATAAATAGGTTTATTGTCATAAATTTTTCCTTGATTGGCTGTGTAATAAAACGATATCTGTGCAATGAAAATGGTAGTAATATG ]
[+] EMBL AU222769 [ GGCGGGCAGCCGCTCAACGAGCCCGTGGTGCAGCATGGCCCCTTCGTGATGAACACCCGCGCCGAGATCCAGCAGGCCATGGAGGATTACTACTATGGCAGGAATGGCTTCGAGAAGGCCCGCCATTGGAGCTCCACAGCATGATTTCATCATCCTCCCTTCATACCATGACACACCATCACCATACATAATGCTGCTGAGCTGAACATGATGCTGTTTTTAGGCATATTAGTATATCATTTGATTCNAGTAATAATAAATAGGTTTATTGTCATAAATTTTTCCTTGATTGGCTGTGTAATAAAACGATATCTGTGCAATGAAAATGGTAGTAATATGATTGGATTTTAAAAAAAA ]
[+] EMBL AU101314 [ CAGCATGGCCCCTTCGTGATGAACACCCGCGCCGAGATCCAGCAGGCCATGGAGGATTACTACTATGGCAGGAATGGCTTCGAGAAGGCCCGCCATTGGAGCTCCACAGCATGATTTCATCATCCTCCCTTCATACCATGACACACCATCACCATACATAATGCTGCTGAGCTGAACATGATGCTGTTTTTAGGCATATTAGTATATCATTTGATTC AGTAATAATAAATAGGTTTATTGTCATAAATTTTTCCTTGATTGGCTGTGTAATAAAACGATATCTGTGCAATGAAAATGGTAGTAATATGATTGGATTTTAAATGGAGCTGCACAACAGATTATGCAAAAA]
consensusID : consensus_9582#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 419 fasta sequence
[ACCAAAGAGCAGCAGAGCAGCAAGATCACTAACCTGTACTACTGCCTCTAACCCCAAATCCAAATCCAAATCCAAGGCCAAGCATCTCCTGCTGCTTCTCCTGATTGTCTCGCTCATCTTGCTTGCAGCTTTCTTGCTGATTCGAGCAACCATGTCTTCTTCGTCTTCGTCGTCGGATGCTGTCGCCGCGGCGGCGGGGNCGGACTTTTTGAGAAGCCGAGGACGGTGGTGAAGAAGCTCCTGGCGGAGTCCCAGCCCGAGGGCGACGGCGCCACCGTGCGAAGGAGCATCGGCAGGTACGAGCTCAGGAACCTGGATCCTTTNCTCATGCTTCGATGGAATTCTCTGTTTTCCAAGCCTTCTTGGATTTTCCCGACCATCCGATAGAGGGATTTGAGACAGTCACCTACATGTTTGAA]
[+] EMBL OSC276 [ACCAAAGAGCAGCAGAGCAGCAAGATCACTAACCTGTACTACTGCCTCTAACCCCAAATCCAAATCCAAATCCAAGGCCAAGCATCTCCTGCTGCTTCTCCTGATTGTCTCGCTCATCTTGCTTGCAGCTTTCTTGCTGATTCGAGCAACCATGTCTTCTTCGTCTTCGTCGTCGGATGCTGTCGCCGCGGCGGCGGGGNCGGACTTTTTGAGAAGCCGAGGACGGTGGTGAAGAAGCTCCTGGCGGAGTCCCAGCCCGAGGGCGACGGCGCCACCGTGCGAAGGAGCATCGGCAGGTACGAGCTCAGGAACCTGGATCCTTTNCTCATGCTTCGATGGAATTCTCTGTTTTCCAAGCCTTCTTGGATTTTCCCGACCATCCGATAGAGGGATTTGAGACAGTCACCTACATGTTTGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9582#0 TATCCTCCTAGAGAGGGACATGGGGAGAGGAGGAGTGGATCCACGATGATGACGAGGAGC 60
consensus_9582#1 --------------------------------------------------ACCAAAGAGC 10
* * ****
consensus_9582#0 ATGATGAAGTTTTTCTCTCCCTCCTCCTCCGCTATTTATACCACCCTCTCCTCTCGTCTC 120
consensus_9582#1 AGCAGAGCAGCAAGATCACTAACCTGTACTACTGCCTCTAACCCCAAATCCAAAT----- 65
* * ** * *** * ** * ** * ** ***
consensus_9582#0 GCCAGGATCAACGCCACTCGCCACACACCGCCACCACCACCAAAGAGCAGCAGAGCAGCA 180
consensus_9582#1 -CCAAATCCAAGGCCAAGCATCTCCTGCTGCTTCTCCTG---------ATTGTCTCGCTC 115
*** *** **** * * * * ** * * * *
consensus_9582#0 AGATCACTAACCTCTTTCTTGCTGATTCGAGCAACCATGTCTTCTTCGTCTTCGTCGTCG 240
consensus_9582#1 ATCTTGCTTGCAGCTTTCTTGCTGATTCGAGCAACCATGTCTTCTTCGTCTTCGTCGTCG 175
* * ** * ***********************************************
consensus_9582#0 GATGCTGTCGCCGCGGCGGCGGCGGCGA--CTTTTGAGAAGCCGAGGACGGTGGTGAAGA 298
consensus_9582#1 GATGCTGTCGCCGCGGCGGCGGGGNCGGACTTTTTGAGAAGCCGAGGACGGTGGTGAAGA 235
********************** * ** *****************************
consensus_9582#0 AGCTCCTGGCGGAGTCCCAGCCCGAGGGCGACGGCGCCACCGTGCGAAGGAGCATCGGCA 358
consensus_9582#1 AGCTCCTGGCGGAGTCCCAGCCCGAGGGCGACGGCGCCACCGTGCGAAGGAGCATCGGCA 295
************************************************************
consensus_9582#0 GGTACGAGCTCAGGAACCTGGATCCTTTCCTCATGCT-CGATG-AATTCTCTGTTT-CCA 415
consensus_9582#1 GGTACGAGCTCAGGAACCTGGATCCTTTNCTCATGCTTCGATGGAATTCTCTGTTTTCCA 355
**************************** ******** ***** ************ ***
consensus_9582#0 AGCCTGCTGGA--TTTCCCGACCATCCGCATAGAGGATTCGAGACAGTCACCTACATGCT 473
consensus_9582#1 AGCCTTCTTGGATTTTCCCGACCATCCGATAGAGGGATTTGAGACAGTCACCTACATGTT 415
***** ** * *************** ***** ****************** *
consensus_9582#0 CGAAGGGGCGTTCACCCACCAAGACTTTGCAGGCCACAAGGGCACCATCGGCACGGGAGA 533
consensus_9582#1 TGAA-------------------------------------------------------- 419
***
consensus_9582#0 TGTCCAGTGGATGACGGCTGGCCGCGGCATCGTGCACTCGGAGATGCCGGCAGCGGACGG 593
consensus_9582#1 ------------------------------------------------------------
consensus_9582#0 TGTGCAGAAGGGCCTCCAGCTCTGGATCAACCTCTCTTCCAAGGACAAAATGATTGAGCC 653
consensus_9582#1 ------------------------------------------------------------
consensus_9582#0 GAGGTACCAGGAGCTTATGAGCAAGGACATCAGCTGCGCCGAGAAGGACGGCGTGGAGGT 713
consensus_9582#1 ------------------------------------------------------------
consensus_9582#0 GAAGATCATCGCCGGCGAGGCCTTCGGGGTGCGTTCGCCGGTGTACACGCGGACGCCGAC 773
consensus_9582#1 ------------------------------------------------------------
consensus_9582#0 GATGTACATGGACTTCACGATGCAGCCGGGGTCGCAGCTGCACCAGCCCATCCCGGAGGC 833
consensus_9582#1 ------------------------------------------------------------
consensus_9582#0 CTGGAACGCCTTCGTCTACATCATCGACGGCGAGGGCGTGTTCGGGAGGGAGAAGGCGTC 893
consensus_9582#1 ------------------------------------------------------------
consensus_9582#0 GCCGGCGACCGCCCACCACTGCCTCGTTCTCGGCCCCGGCGACGGCCTGAGCGTCTGGAA 953
consensus_9582#1 ------------------------------------------------------------
consensus_9582#0 TAAGTCCGGCGAGCCGCTCCGGTTCGCGCTCGTCGGCGGGCAGCCGCTCAACGAGCCCGT 1013
consensus_9582#1 ------------------------------------------------------------
consensus_9582#0 GGTGCAGCATGGCCCCTTCGTGATGAACACCCGCGCCGAGATCCAGCAGGCCATGGAGGA 1073
consensus_9582#1 ------------------------------------------------------------
consensus_9582#0 TTACTACTATGGCAGGAATGGCTTCGAGAAGGCCCGCCATTGGAGCTCCACAGCATGATT 1133
consensus_9582#1 ------------------------------------------------------------
consensus_9582#0 TCATCATCCTCCCTTCATACCATGACACACCATCACCATACATAATGCTGCTGAGCTGAA 1193
consensus_9582#1 ------------------------------------------------------------
consensus_9582#0 CATGATGCTGTTTTTAGGCATATTAGTATATCATTTGATTCAGTAATAATAAATAGGTTT 1253
consensus_9582#1 ------------------------------------------------------------
consensus_9582#0 ATTGTCATAAATTTTTCCTTGATTGGCTGTGTAATAAAACGATATCTGTGCAATGAAAAT 1313
consensus_9582#1 ------------------------------------------------------------
consensus_9582#0 GGTAGTAATATGATTGGATTTTAAAAAAAACTGCACAACAGATTATGCAAAAA 1366
consensus_9582#1 -----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||