These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9584#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 780 fasta sequence [GGAACTCTTACATCAAGAAGAAGCTTCGCCAGCGCGGCATCGATCCGGCCACCCACAAGCCGCTCAAGTGGTCCGATTACGTGTTCGACGGCTACAACCACCAGCTACCTCCGTACAA-CCATGG-CGGCATCTATGGCGGCGGCGACAG--AAGGACA-CGGCGGTGCACTTCGACG-NCCACGCCC-TCGG-CAACTGGTGCTAGCAGCTACCCCTCCGTAAAAAAAAAAAACAATTCTAGCTACAAACCTGGACATATGCGTGTCTAGATT-CATAGCTAAAGTTTGTTTTTTTATGGGACAGAGTAGTACCATCTAGCTAAGCTCGAATCCACCCCAAATTAGGCGCAACGAGACCGACGGCGAGCGATGAGCCATAGCAATGAT-CAGCCGATCAATTAGTAGGCGCCATAATTGCATG-CAAGCATGCTGCTACGNATAAATGTACGTATACTACGGGTCCAAGTTTTCCAACGTGTATACGCGCGTGTGAATTAATTAAGTCGGCGCGTACGTAATTAAGATCATAGCTGATGTTTGGTGAGAGGTTTTTGGGTTGTCAAAAGATTTTTTTTTTTTTTGGTTTAGTTTCTTTCATTTCTCTTCTCTCCTTTGATCGATCGATCGAGAGATATCGATGGATCGGGCATTAGTTTGCTGCTTTTGAGTGACATGATTGTGATGATAATTAAAGTCTTTAATCTCGATCGCCGGTACACGTACAACATGTAAAGTTCTTCATATGATGATATATATAAATATATATATAGACATTGATGCTAAAAAA] [+] EMBL AU101387 [GGAACTCTTACATCAAGAAGAAGCTTCGCCAGCGCGGCATCGATCCGGCCACCCACAAGCCGCTCAAGTGGTCCGATTACGTGTTCGACGGCTACAACCACCAGCTACCTCCGTACAA CCATGG CGGCATCTATGGCGGCGGCGACAG AAGGACA CGGCGGTGCACTTCGACG NCCACGNCC TCGG CAACTGGTGCTAGCAGCTACCCCTCCGTAAAAAAAAAAAACAATTCTAGCTACAAACCTGGACATATGCGTGTCTAGATT CATAGCTAAAGTTTGTTTTTTTATGGGACAGAGTAGTACCATCTAGCTAAGCTCGAATCCACCCCAAATTAGGCGCAACGAGACCGACGNCGAGCGATGAGCCATAGCAATGAT CAGCCGATCAATTAGTAGGCGCCATAATTTCATG CAAGCATGCTGCTACGNATAAATGTACGna ] [+] EMBL C73778 [GGAACTCTTACATCAAGAAGAAGCTTCGCCAGCGCGGCATCGATCCGGCCACCCACAAGCCGCTCAAGTGGTCCGATTACGTGTTCGACGGCTACAACCACCAGCTACCTCCGTACAA CCATGG CGGCATCTATGGCGGCGGCGACAN AAGGACA CGGCGGTGCACTTCGACG NCCACGGCC TCGG CAACTGGTGCTAGCAGCTACCCCTCCGTAAAAAAAAAAAACAATTCTAGCTACAAACCTGGNCATATGCGTGTCTAGATT CATAGCTAAAGTTTGTTTTTTTATGGGACAGAGTAGTACCATCTAGCTAAGCTCGAATCCACCCCAAATTAGGCGCAACGNGACCGACGGCGAGCGATGAGCCATAGCAATGAT CAGCCGATCAATTAGTAGGCGNCATAATTGCATG CAAGCATGCTGCTACGNt ] [+] EMBL C99577 [ gtacCCCCCTTACAC CCNTGGCCGGCATCTTTGGCCNCCGCGACAGCCAAGGACACCGGCGTTGCAC TCGACG CCCACGCCC TCGGCCAACTGGTGCTAGCAGCTACCCCTCCGTAAAAAAAAAAANC ATTCTAGCTACAAACCTGGACATNTGCGTGTCTAGATTCCATAGCTAAAGTTTGTTTTTTTATGGGACAGAGTAGTACCATCTAGCTAAGCTCGAATCCACCCCAAATTAGGCGCAACGAGACCGACGGCGAGCGATGAGCCATAGCAATGATCCAGCCGATCAATTAGTAGGCGCCATAATTGCATGCCAAGCATGCTGCTACGTATAAATGTACGTATACTACGGGTCCAAGTTTTCCAACGTGTATACGCGCGTGTGAATTAATTAAGTCGGCGCGTACGTAATTAAGATCATAGCTGATGTTTGGTGAGAGGTTTTTGGGTTGTCAAAAGATTTTTTTTTTTTTTGGTTTAGTTTCTTTCATTTCTCTTCTCTCCTTTGATCGATCGATCGAGAGATATCGATGGATCGGGCATTAGTTTGCTGCTTTTGAGTGACATGATTGTGATGATAATTAAAGTCTTTAATCTCGATCGCCGGTACACGTACAACATGTAAAGTTCTTCATATGATGATATATATAAATATATATATAGACATTGATGCTAAAAAA] [+] EMBL C99637 [ CTCCGTACAACCCATGG CGGCATCTATGGCGGCGGCGACAGC AAGGACA CGGCGGTGCACTTCGACGCCCCACGCCCNTCGG CAACTGGTGCTAGCAGCTACCCCTCCGTAAAAAAAAAAAACAATTCTAGCTACAAACCTGGACATATGCGTGTCTAGATT CATAGCTAAAGTTTGTTTTTTTATGGGACAGAGTAGTACCATCTAGCTAAGCTCGAATCCACCCCAAATTAGGCGCAACGAGACCGACGGCGAGCGATGAGCCATAGCAATGAT CAGCCGATCAATTAGTAGGCGCCATAATTGCATG CAAGCATGCTGCTACGTATAAATGTACGTATACTACGGGT CAAGTTTT CAACGTGTATACGCGCGTGTGAATTAATTAAGTCGGCGCGTACGTAATTAAGATCATAGCTGATGTTTGGTGAGAGGTTTTTGGGTTGTCAAAAGATTTTTTTTTTTTTTGGTTTAGTTTCTTTCATTTCTCTTCTCTCCTTTGATCGATCGATCGAGAGATATCGATGGATCGGGCATTAGTTTGCTGCTTTTGAGTGACATGATTGTGATGATAATTAAAGTCTTTAATNTNGATCGCCGGTACACGTACAACATGTAAAGTTCTTCATATGATGATATATATAAATATATATATAGANATTGANGNTAA ] consensusID : consensus_9584#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 758 fasta sequence [AGCTCCTTCTTTCGTCTTCGTCTTCGCCATCGTCGTCGGGACATCGCCGGCGGTTTGGTTTGTTCTCTCTCGGTCGTCGTCGGCGGCAATTGCGACATTGAGCACGGTGGTGGTGGTGGCCATCTATGGCGAAGCGGGCGGGCGGCGCGAGGAAGAAGCTGAGGAGAGGGCTGTGGTCGCCGGAGGAGGACGAGAAGCTGATGAACCACATTGCCAAGTATGGCCATGGCTGCTGGAGCTCCGTCCCCAAGCTTGCAGGCCTTGAGAGATGTGGGAAGAGCTGCAGGCTGAGGTGGATAAACTACCTCAGGCCAGACCTCAAGAGGGGAGCATTCTCACAGGAAGAAGAAGACCTCATCATCCATCTCCATTCCATGCTAGGAAACAAGTGGTCTCAGATTGCGGCTCAGCTGCCGGGTCGGACGGACAACGAGGTCAAGAACTTCTGGAACTCTTACATCAAGAAGAAGCTTCGCCAGCGCGGCATCGATCCGGCCACCCACAAGCCGCTCGCCGAGGTCGTCGCCGCCGCCGCCTGCGCCCGCACGCCGGCGGTGTTCAGCGACGCCGAGCTCATCCTGTCCTCCATCGGCGCCCAGCCGCCGCCGGAGAGCTATGATGGCAGCCGGTACAGCACNGGAGTGCGGCGCCGCGAGTGTCGGCGGCGACGGGTCGCTGTCGTCGCTGTCCGGGTACAGCCAAGCGACAGCGGAGTTCGCGGTGGACGGCGCCAGCGCGAGCGCGCTGCTGCACTGCGG] [+] EMBL CB643957 [AGCTCCTTCTTTCGTCTTCGTCTTCGCCATCGTCGTCGGGACATCGCCGGCGGTTTGGTTTGTTCTCTCTCGGTCGTCGTCGGCGGCAATTGCGACATTGAGCACGGTGGTGGTGGTGGCCATCTATGGCGAAGCGGGCGGGCGGCGCGAGGAAGAAGCTGAGGAGAGGGCTGTGGTCGCCGGAGGAGGACGAGAAGCTGATGAACCACATTGCCAAGTATGGCCATGGCTGCTGGAGCTCCGTCCCCAAGCTTGCAGGCCTTGAGAGATGTGGGAAGAGCTGCAGGCTGAGGTGGATAAACTACCTCAGGCCAGACCTCAAGAGGGGAGCATTCTCACAGGAAGAAGAAGACCTCATCATCCATCTCCATTCCATGCTAGGAAACAAGTGGTCTCAGATTGCGGCTCAGCTGCCGGGTCGGACGGACAACGAGGTCAAGAACTTCTGGAACTCTTACATCAAGAAGAAGCTTCGCCAGCGCGGCATCGATCCGGCCACCCACAAGCCGCTCGCCGAGGTCGTCGCCGCCGCCGCCTGCGCCCGCACGCCGGCGGTGTTCAGCGACGCCGAGCTCATCCTGTCCTCCATCGGCGCCCAGCCGCCGCCGGAGAGCTATGATGGCAGCCGGTACAGCACNGGAGTGCGGCGCCGCGAGTGTCGGCGGCGACGGGTCGCTGTCGTCGCTGTCCGGGTACAGCCAAGCGACAGCGGAGTTCGCGGTGGACGGCGCCAGCGCGAGCGCGCTGCTGCACTGCGG] consensusID : consensus_9584#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 536 fasta sequence [GTGCACTTCGACGCCCACGCCCTCGCTANGTGGTTGCTAGCACGCGTACCCCTCCGTAAAAACACATTCTAGCTACAAACCTGGACATATGCGTGTCTAGATTCATAGCTAAAGTTTGTTTTTTTATGGGACAGAGTAGTACCATCTAGCTAAGCTCGAATCCCCCCCCAATTAGGCGCAACGAGACCGACGGCGAGCGATGACCATACAATGATCAGCCGATCCATTAGTAGGCNCCATAATTGCATGCAAGCATGCTGCTACGTATAAATGTACGTATACCTACGGGTCAAGTTTTCAACGTGTATACGCGCGTGTGAATTAATTAAGTAGTCGCGTACGTAATTAAGATCATAGCTGATGTTTGGTGAGAGGCTTTTTGGGTTGTCCAAAGATTTTTTTTTTTTTGGTTTAGTTTCTTTCATTTCTCTTCTCTCCTTTGATCGATCGATCGAGAGATATCGATGGATCGGCATTAGTTTGCTGCTTTTGAGTGACATGATTGTGATGATAATTAAAGTCTTTCAAAAAAAAAA] [+] EMBL BI806391 [GTGCACTTCGACGCCCACGCCCTCGCTANGTGGTTGCTAGCACGCGTACCCCTCCGTAAAAACACATTCTAGCTACAAACCTGGACATATGCGTGTCTAGATTCATAGCTAAAGTTTGTTTTTTTATGGGACAGAGTAGTACCATCTAGCTAAGCTCGAATCCCCCCCCAATTAGGCGCAACGAGACCGACGGCGAGCGATGACCATACAATGATCAGCCGATCCATTAGTAGGCNCCATAATTGCATGCAAGCATGCTGCTACGTATAAATGTACGTATACCTACGGGTCAAGTTTTCAACGTGTATACGCGCGTGTGAATTAATTAAGTAGTCGCGTACGTAATTAAGATCATAGCTGATGTTTGGTGAGAGGCTTTTTGGGTTGTCCAAAGATTTTTTTTTTTTTGGTTTAGTTTCTTTCATTTCTCTTCTCTCCTTTGATCGATCGATCGAGAGATATCGATGGATCGGCATTAGTTTGCTGCTTTTGAGTGACATGATTGTGATGATAATTAAAGTCTTTCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9584#0 GGAACTCTTACATCAAGAAGAAGCTTCGCCAGCGCGGCATCGATCCGGCCACCCACAAGC 60 consensus_9584#2 ------------------------------------------------------------ consensus_9584#1 -----------------------------AGCTCCTTCTTTCGTCTTCGTCTTCGCCATC 31 consensus_9584#0 CGCTCAAGTGGTCCGATTACGTGTTCGACGGCTACAACCACCAGCTACCTCCGTACAACC 120 consensus_9584#2 ------------------------------------------------------------ consensus_9584#1 GTCGTCGGGACATCGCCGGCGGTTTGGTTTGTTCT--CTCTCGGTCGTCGTCG-GCGGCA 88 consensus_9584#0 ATGGCGGCATCTATGGCGGCGGCGACAGAAGGACACGGCGGTGCACTTCGACGNCCACGC 180 consensus_9584#2 ----------------------------------------GTGCACTTCGACGCCCACGC 20 consensus_9584#1 ATTGCGACATTGAGCACGGTGGTGGTGGTGGCCATCTATGGCGAAGCGGGCGGGCGGCGC 148 * * * * * * *** consensus_9584#0 CCTCGGCAACTGGT-GCTAGCA-GC-TACCCCTCCGTAAAAAAAAAAAACAATTCT-AGC 236 consensus_9584#2 CCTCGCTANGTGGTTGCTAGCACGCGTACCCCTCCGTAAAAACACA------TTCT-AGC 73 consensus_9584#1 G--AGGAAGAAGCTGAGGAGAGGGCTGTGGTCGCCGGAGGAGGACGAGAAGCTGATGAAC 206 * * * * ** ** * *** * * * * * * * consensus_9584#0 TACAAACCTGGACATATGCGTGTCT-----AGATTCATAGCTAAAGTTTGTTTTTTTATG 291 consensus_9584#2 TACAAACCTGGACATATGCGTGTCT-----AGATTCATAGCTAAAGTTTGTTTTTTTATG 128 consensus_9584#1 CACATTGCCAAGTATGGCCATGGCTGCTGGAGCTCCGTCCCCAAGCTTGCAGGCCTTGAG 266 *** * ** * ** ** ** * * * * ** ** ** * consensus_9584#0 GGACAGAGTAGTACCATCTAGCTAAGCTCGA--ATCCACCCCAAATTAGGCGCAACGAGA 349 consensus_9584#2 GGACAGAGTAGTACCATCTAGCTAAGCTCGA--ATCCCCCCCCAATTAGGCGCAACGAGA 186 consensus_9584#1 AGATGTGGGAAGAGCTGCAGGCTGAGGTGGATAAACTACCTCAGGCCAGACCTCAAGAGG 326 ** * * * * * *** ** * ** * * ** * ** * * *** consensus_9584#0 --------CCGACGGCGAGCGATGAGCCATAGCAATGATCAGCCGATCAATTAGTAGGCG 401 consensus_9584#2 --------CCGACGGCGAGCGATGA-CCATA-CAATGATCAGCCGATCCATTAGTAGGCN 236 consensus_9584#1 GGAGCATTCTCACAGGAAGAAGAAGACCTCATCATCCATC--TCCATTCCATGCTAGGAA 384 * ** * ** ** * ** *** * ** * **** consensus_9584#0 CCATAATTGCATGCAAGCATGCTGCTACGNATAAAT-GTACGTATAC-TACGGGTCCAAG 459 consensus_9584#2 CCATAATTGCATGCAAGCATGCTGCTACGTATAAAT-GTACGTATACCTACGGGTC-AAG 294 consensus_9584#1 ACA-AGTGGTCTCAGATTGCGGCTCAGCTGCCGGGTCGGACGGACAACGAGGTCAAGAAC 443 ** * * * * * * * * * * *** * * * * ** consensus_9584#0 TTTTCCAACGTGTATACGCGCGTGTGAATTAATTAA------GTCGGCGCGTACGTAATT 513 consensus_9584#2 TTTTC-AACGTGTATACGCGCGTGTGAATTAATTAA------GTAGTCGCGTACGTAATT 347 consensus_9584#1 TTCTGGAACTCTTACATCAAGAAGAAGCTTCGCCAGCGCGGCATCGATCCGGCCACCCAC 503 ** * *** ** * * ** * * * ** * consensus_9584#0 AAGATCATAGCTGATGTTTGGTGAGAGG-TTTTTGGGTTGTCAAAAGATTTTTTTTTTTT 572 consensus_9584#2 AAGATCATAGCTGATGTTTGGTGAGAGGCTTTTTGGGTTGTCCAAAGATTTTTTTTTTTT 407 consensus_9584#1 AAGCCGCTCGCCGAGGTCGTCGCCGCCGCCGCCTGCGCCCGCACGCCGGCGGTGTTCAGC 563 *** * ** ** ** * * ** * * * ** consensus_9584#0 TTGGTTTAGTTTCTTTCATTTCTCTTCTCTCCTTTGATCGATCGATCGAGAGATATCGAT 632 consensus_9584#2 T-GGTTTAGTTTCTTTCATTTCTCTTCTCTCCTTTGATCGATCGATCGAGAGATATCGAT 466 consensus_9584#1 GACGCCGAGCTCATCCTGTCCTCCATCGGCGCCCAG--CCGCCGCCGGAGAGCTAT-GAT 620 * ** * * * * ** * * * ** ***** *** *** consensus_9584#0 GGATCGGGCATTAGTTTGCTGCTTTTGAGTGACATGATTGT-GATGATAATTAAAGTCTT 691 consensus_9584#2 GGATCGG-CATTAGTTTGCTGCTTTTGAGTGACATGATTGT-GATGATAATTAAAGTCTT 524 consensus_9584#1 GG--CAGCCGGTACAGCACNGGAGTGCGGCGCCGCGAGTGTCGGCGGCGACGGGTCGCTG 678 ** * * * ** * * * * * * ** *** * * * ** consensus_9584#0 TAATCTCGATCGCCGGTACACGTACAACATGTAAAGTTCTTCATATGATGATATATATAA 751 consensus_9584#2 TCAAAAAAAAAA------------------------------------------------ 536 consensus_9584#1 TCGTCGCTGTC-CGGGTACAGCCAAGCGACAGCGGAGTTCGCGGTGGACGGCGCCAGCGC 737 * consensus_9584#0 ATATATATATAGACATTGATGCTAAAAAA 780 consensus_9584#2 ----------------------------- consensus_9584#1 GAGCGCGCTGCTGCACTGCGG-------- 758 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||