|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9586#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1047 fasta sequence
[CCAACCGGAGTTAAGGAAGAAGGGAAGGAAAGCCACCCGAGCAAGCGGATCACATCGAGGTAGGGGAGGACCGGAGGAGCTGAGCTCAGCTCGGTGAGGGGTGGACTGGGAGTGCGTGGGTGGGTGTGATGGAGTGGACGACGGTGGAGGCGGCGAACGGGGCCAAGCTGAGCGTGCGGCTGTTCAAGCCGGCGGCGG-GGGCGGAGGCGGCGGCGGCGGAGGACGTCGCGGTGGTGCTGGTGCACCCCTACACGATCCTGGGCGGCGTGCAGGGCCTGCTGCGCGGGATCGCCGAGGGCGTCGCGCGGCGC-GGGTACCGCGCCGTCACCTTCGACATGCGCGGCGCCGGGAGGTCCACCGGCCGCGCCTCGCTCACCGGCTCCACCGAGGTCGGGGACGTCGAGGCCGTCTGCCGCTGGGTCGCTGACAATCTCAACCCGCGCGGCGTCCTCCTCGTCGGCTCCTCCGCTGGAGCACCAATAGCGGGATCTGCAGTTGATAAGGTTGACCAGGTCATTGGTTATGTTAGCATTGGGTACCCATTTGGTCTAATGGCCTCGGTCCTATTTGGCAGACACCACAATGCTATCCTCAAGTCTGAGAAACCAAAGTTATTCGTCATGGGAACTAAAGATGGCTTCACAAGTGTAAAGCAGCTGCAAAACAAGCTCAAGAATGCAGCAGGACGGGTTGATACTCACTTGATCGAAGGAGCTGGCCACTTCCAAATGGAAGGCCCTGCTTTTGATGCACGAATGGTTGACCTTATTGTTAATTTCATCAAATCCTTGCCCAAATAGCATTGACAGTGACTGTGTGCAAATTTGTCATGATTGTAGTGAGTTAGTGACAAACAAAAGAAGCTATTGAACAGTGCATTCATGGTGTGTATTTTCTCATCTTGTAATTGTACACTTGGTGTTGTAATTTTAGTTCAATCCGTGTTTCTTTCGAAGCCTAGTGTAAGATGATGAGTTTCAGATACAATACATTTACAGGATATGACATTTCATGGTTTCAGTCNAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK063741 [CCAACCGGAGTTAAGGAAGAAGGGAAGGAAAGCCACCCGAGCAAGCGGATCACATCGAGGTAGGGGAGGACCGGAGGAGCTGAGCTCAGCTCGGTGAGGGGTGGACTGGGAGTGCGTGGGTGGGTGTGATGGAGTGGACGACGGTGGAGGCGGCGAACGGGGCCAAGCTGAGCGTGCGGCTGTTCAAGCCGGCGGCGG GGGCGGAGGCGGCGGCGGCGGAGGACGTCGCGGTGGTGCTGGTGCACCCCTACACGATCCTGGGCGGCGTGCAGGGCCTGCTGCGCGGGATCGCCGAGGGCGTCGCGCGGCGC GGGTACCGCGCCGTCACCTTCGACATGCGCGGCGCCGGGAGGTCCACCGGCCGCGCCTCGCTCACCGGCTCCACCGAGGTCGGGGACGTCGAGGCCGTCTGCCGCTGGGTCGCTGACAATCTCAACCCGCGCGGCGTCCTCCTCGTCGGCTCCTCCGCTGGAGCACCAATAGCGGGATCTGCAGTTGATAAGGTTGACCAGGTCATTGGTTATGTTAGCATTGGGTACCCATTTGGTCTAATGGCCTCGGTCCTATTTGGCAGACACCACAATGCTATCCTCAAGTCTGAGAAACCAAAGTTATTCGTCATGGGAACTAAAGATGGCTTCACAAGTGTAAAGCAGCTGCAAAACAAGCTCAAGAATGCAGCAGGACGGGTTGATACTCACTTGATCGAAGGAGCTGGCCACTTCCAAATGGAAGGCCCTGCTTTTGATGCACGAATGGTTGACCTTATTGTTAATTTCATCAAATCCTTGCCCAAATAGCATTGACAGTGACTGTGTGCAAATTTGTCATGATTGTAGTGAGTTAGTGACAAACAAAAGAAGCTATTGAACAGTGCATTCATGGTGTGTATTTTCTCATCTTGTAATTGTACACTTGGTGTTGTAATTTTAGTTCAATCCGTGTTTCTTTCGAAGCCTAGTGTAAGATGATGAGTTTCAGATACAATACATTTACAGGATATGACATT ]
[+] EMBL C74354 [ ACGGTGGAGGCGGCGAACGGGGCCAAGCTGAGCGTGCGGCTGTTCAAGCCGGCGGCGGTGGGCGGAGGCGGCGGCGGCGGAGGACGTCGCGGTGGTGCTGGTGCA CCCTACACGATCCTGGGCGGCGTGCAGGGCCTGCTGCGCGGGATCGCCGAGGGCGTCGCGCGGCGCGGGGTAAC NTNCNACCCTTTCGACATGCGCNGCGCCGGGAAGTCCACCGGCCGCGCCTCGCTCACCGGCTCCANCGANGTCGGGGACGTCGAAGCCGTCTGCCGCTGGGTCGCTG ]
[+] EMBL CB678792 [ AGTGTACTTCAGCTGCAAAACAAGCTCAAGAATGCAGCAGGACGGGTTGATACTCACTTGATCGAAGGAGCTGGCCACTTCCAAATGGAAGGCCCTGCTTTTGATGCACGAATGGTTGACCTTATTGTTAATTTCATCAAATCCTTGCCCAAATAGCATTGACAGTGACTGTGTGCAAATTTGTCATGATTGTAGTGAGTTAGTGACAAACAAAAGAAGCTATTGAACAGTGCATTCATGGTGTGTATTTTCTCATCTTGTAATTGTACACTTGGTGTTGTAATTTTAGTTCAATCCGTGTTTCTTTCGAAGCCTAGTGTAAGATGATGAGTTTCAGATACAATACATTTACAGGATATGACATTTCATGGT ]
[+] EMBL AU172802 [ GACCTTATTGTTAATTTCATCAAATCCTTGCCCAAANAGCATTGACAGTGACTGTGNGCAAATTTGTCATGATTGTAGTGAGTTAGTGACAAACAAAANAAGCTATTGAACAGNGCATTCATGGNGNGTATTTTCTCATCTTGNAATTGNACACTTGGTGTTGTAATTTTAGTTCAATCCGTGTTTCTTTNGAAGCCTAGTGTAANATGATGAGTTTCAGATACAATACATTTACAGGATATGACATTTCATGGTTTCAGTCNAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_9586#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 463 fasta sequence
[AGGTTGACCAGGTCATTGGTTATGTTAGCATTGGGTACCCATTTGGTCTAATGGCCTCGGTCCTATTTGGCAGACACCACAATGCTATCCTCAAGTCTGAGAAACCAAAGTTATCCTCATGGGAACTAAAGATGGCTTCACAAGTGTAAAGCAGCTGCAAAACAAGCTCAAGAATGCAGCAGGACGGGTTGATACTCACTTGATCGAAGGAGCTGGCCACTTCCAAATGGAAGGCCCTGCTTTTGATGCACGAATGGTTGACCTTATTGTTAATTTCATCAAATCCTTGCCCAAATAGCATTGACAGTGACTGTGTGCAAATTTGTCATGATTGTAGTGAGTTAGTGACAAACAAAAGAAGCTATTGAACAGTGCATTCATGGTGTGTATTTTCTCATCTTGTAATTGTACACTTGGTGTTGTAATTTTAGTTCAATCCGTGTTTCTTTCGAAAAAAAAAAAA]
[+] EMBL AU101407 [AGGTTGACCAGGTCATTGGTTATGTTAGCATTGGGTACCCATTTGGTCTAATGGCCTCGGTCCTATTTGGCAGACACCACAATGCTATCCTCAAGTCTGAGAAACCAAAGTTATCCTCATGGGAACTAAAGATGGCTTCACAAGTGTAAAGCAGCTGCAAAACAAGCTCAAGAATGCAGCAGGACGGGTTGATACTCACTTGATCGAAGGAGCTGGCCACTTCCAAATGGAAGGCCCTGCTTTTGATGCACGAATGGTTGACCTTATTGTTAATTTCATCAAATCCTTGCCCAAATAGCATTGACAGTGACTGTGTGCAAATTTGTCATGATTGTAGTGAGTTAGTGACAAACAAAAGAAGCTATTGAACAGTGCATTCATGGTGTGTATTTTCTCATCTTGTAATTGTACACTTGGTGTTGTAATTTTAGTTCAATCCGTGTTTCTTTCGAAAAAAAAAAAA]
consensusID : consensus_9586#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 296 fasta sequence
[GGAGGACGTCGCGGTGGTGCTGGTGCACCCTACACGATCCTGGGCGGCGTGCANGGCCTGCTGCGCGGGATNGNCGAGGGCGTNGCGCGGCGCGGTGTACNNTTCTACGCTTTCGACATGCGCGGCGCCGGGAGGTCCACCGGCCGCGCTCGCTCACCGGCTCCACCGAGGTCGGGGACGTCGAGGCCGTNTGCCGCTGGGTCGCTGANAATCTCAAACCGCGCGGCGTCCTCNTCGTCGGCTCCTNCGCTGGAGCACCAATAGCGGGATTTGCAATTGAAAAGGTTGAACAGGTC]
[+] EMBL C74233 [GGAGGACGTCGCGGTGGTGCTGGTGCACCCTACACGATCCTGGGCGGCGTGCANGGCCTGCTGCGCGGGATNGNCGAGGGCGTNGCGCGGCGCGGTGTACNNTTCTACGCTTTCGACATGCGCGGCGCCGGGAGGTCCACCGGCCGCGCTCGCTCACCGGCTCCACCGAGGTCGGGGACGTCGAGGCCGTNTGCCGCTGGGTCGCTGANAATCTCAAACCGCGCGGCGTCCTCNTCGTCGGCTCCTNCGCTGGAGCACCAATAGCGGGATTTGCAATTGAAAAGGTTGAACAGGTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9586#0 CCAACCGGAGTTAAGGAAGAAGGGAAGGAAAGCCACCCGAGCAAGCGGATCACATCGAGG 60
consensus_9586#1 ------------------------------------------------------------
consensus_9586#2 ------------------------------------------------------------
consensus_9586#0 TAGGGGAGGACCGGAGGAGCTGAGCTCAGCTCGGTGAGGGGTGGACTGGGAGTGCGTGGG 120
consensus_9586#1 ------------------------------------------------------------
consensus_9586#2 ------------------------------------------------------------
consensus_9586#0 TGGGTGTGATGGAGTGGACGACGGTGGAGGCGGCGAACGGGGCCAAGCTGAGCGTGCGGC 180
consensus_9586#1 ------------------------------------------------------------
consensus_9586#2 ------------------------------------------------------------
consensus_9586#0 TGTTCAAGCCGGCGGCGGGGGCGGAGGCGGCGGCGGCGGAGGACGTCGCGGTGGTGCTGG 240
consensus_9586#1 ------------------------------------------------------------
consensus_9586#2 ------------------------------------------------------------
consensus_9586#0 TGCACCCCTACACGATCCTGGGCGGCGTGCAGGGCCTGCTGCGCGGGATCGCCGAGGGCG 300
consensus_9586#1 ------------------------------------------------------------
consensus_9586#2 ------------------------------------------------------------
consensus_9586#0 TCGCGCGGCGCGGGTACCGCGCCGTCACCTTCGACATGCGCGGCGCCGGGAGGTCCACCG 360
consensus_9586#1 ------------------------------------------------------------
consensus_9586#2 ------------------------------------------------------------
consensus_9586#0 GCCGCGCCTCGCTCACCGGCTCCACCGAGGTCGGGGACGTCGAGGCCGTCTGCCGCTGGG 420
consensus_9586#1 ------------------------------------------------------------
consensus_9586#2 ------------------------------------------------------------
consensus_9586#0 TCGCTGACAATCTCAACCCGCGCGGCGTCCTCCTCGTCGGCTCCTCCGCTGGAGCACCAA 480
consensus_9586#1 ------------------------------------------------------------
consensus_9586#2 ------------------------------------------------------------
consensus_9586#0 TAGCGGGATCTGCAGTTGATAAGGTTGACCAGGTCATTGGTTATGTTAGCATTGGGTACC 540
consensus_9586#1 ---------------------AGGTTGACCAGGTCATTGGTTATGTTAGCATTGGGTACC 39
consensus_9586#2 ------------------------------------------------------------
consensus_9586#0 CATTTGGTCTAATGGCCTCGGTCCTATTTGGCAGACACCACAATGCTATCCTCAAGTCTG 600
consensus_9586#1 CATTTGGTCTAATGGCCTCGGTCCTATTTGGCAGACACCACAATGCTATCCTCAAGTCTG 99
consensus_9586#2 ------------------------------------------------------------
consensus_9586#0 AGAAACCAAAGTTATTCGTCATGGGAACTAAAGATGGCTTCACAAGTGTAAAGCAGCTGC 660
consensus_9586#1 AGAAACCAAAGTTATCC-TCATGGGAACTAAAGATGGCTTCACAAGTGTAAAGCAGCTGC 158
consensus_9586#2 -------------------------------GGAGGACGTCGCGGTGGTGCTGGTGC-AC 28
** * * ** * ** * ** *
consensus_9586#0 AAAACAAGCTCAAGAATGCAGCAGGACGGGTTGATACTCACT-TGATCGAAGGAGCTGGC 719
consensus_9586#1 AAAACAAGCTCAAGAATGCAGCAGGACGGGTTGATACTCACT-TGATCGAAGGAGCTGGC 217
consensus_9586#2 CCTACACGATCCTGGGCGGCGT-GCANGGCCTGCTGCGCGGGATNGNCGAGGGCGTNGCG 87
*** * ** * * * * * ** ** * * * * *** ** * *
consensus_9586#0 CACTTCCAAATGGAAGGCCCTGCTTTTGATGCACGAATGGTTGACCTTATTGTTAATTTC 779
consensus_9586#1 CACTTCCAAATGGAAGGCCCTGCTTTTGATGCACGAATGGTTGACCTTATTGTTAATTTC 277
consensus_9586#2 CGGCGCGGTGTACNNTTCTACGCTTTCGACATGCG---------CGGCGCCGGGAGGTCC 138
* * * * ***** ** ** * * * * *
consensus_9586#0 ATCAAATCCTTGCCCAAATAGCATTGACAGTGACTGTGTGCAAATTTGTCATGATTGTAG 839
consensus_9586#1 ATCAAATCCTTGCCCAAATAGCATTGACAGTGACTGTGTGCAAATTTGTCATGATTGTAG 337
consensus_9586#2 ACCGGCCGCGCTCGCTCACCGGCTCCACCGAGGTCGGGGACGTCGAGGCCGTN-TGCCGC 197
* * * * * * * * ** * * * * * * * * *
consensus_9586#0 TGAGTTAGTGACAAACAAAAGAAGCTATTGAACAGTGCATTCATGGTGTGTATTTTCTCA 899
consensus_9586#1 TGAGTTAGTGACAAACAAAAGAAGCTATTGAACAGTGCATTCATGGTGTGTATTTTCTCA 397
consensus_9586#2 TGGGTCGCTGANAATCTCAA------ACCGCGCGGCGTCCTCNTCGT---CGGCTCCTNC 248
** ** *** ** * ** * * * * * ** * ** * **
consensus_9586#0 TCTTGTAATTGTACACTTGGTGTTGTAATTTTA---GTTCAATCCGTGTTTCTTTCGAAG 956
consensus_9586#1 TCTTGTAATTGTACACTTGGTGTTGTAATTTTA---GTTCAATCCGTGTTTCTTTCGAAA 454
consensus_9586#2 GCTGGAGCACCAATAGCGGGATTTGCAATTGAAAAGGTTGAACAGGTC------------ 296
** * * * ** *** **** * *** ** **
consensus_9586#0 CCTAGTGTAAGATGATGAGTTTCAGATACAATACATTTACAGGATATGACATTTCATGGT 1016
consensus_9586#1 AAAAAAAAA--------------------------------------------------- 463
consensus_9586#2 ------------------------------------------------------------
consensus_9586#0 TTCAGTCNAAAAAAAAAAAAAAAAAAAAAAA 1047
consensus_9586#1 -------------------------------
consensus_9586#2 -------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||