cluster # 9589

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 9589 cluster # 9589 Sequences # 6 consensus # 1
see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9589#0 length = 1605 sequences # 6
consensusID : consensus_9589#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1605
fasta sequence
                              [AGCCATCTCTCTCTCTCATTCCAAGCTAAAGCCAAGCAAGCCGGCCGCCTCCTTCTCCTACCTCCAGCCTTCAGGCAGCTGCTAAATCGAACGCGACGCCGCACCCACCGCGCCCAATTCACCGCCGAGATCTCAACCCCATACCCCATGGGGATCTCCCACCCGCTGTCCGACGACTTCGACGCTTCTCCCGTGCTCTCGCCGCCGCCGCCGCCGTCCTCATGCTGCCCCCCCGCCCACGACGACCACTACCTTGAGCATCAGGTTTCCAGGATGGACACGCTCCCCGGCCTCGCCATCAAGTACGGCGTCGAGATATCTGACATCAAGAGGGCAAACAGTTTGATGACTGACAGCCAGATGTTCGCACACAAAATGTTGCTCATACCTCTACCAGGAAGACCCATGCCATCCTCTGTAAGGCTCAATGGTTCTGGTCAGAANATGAAGAGAGCGTGGGCTCCAAACAATNCAGC-AAACAGAGATGTTACGGATTCGCTAGACTCATCCNACTACNATTCTTCTNAGCAGCAAATGTCACTCGCCATGAGCACCTTGCAGTCCTATTATGGTCTAACTCCTNCAAATGGGGCTATGACAGATGCTGGCACTGAGATGTCCTTGTACAGTAAGGGCAGTTTGGAGCGTATCAACAGTGAAACATTGGTCACTTCATCTAGATTACCAGACACACATAATACCGACAGAAGTAGGAACTCTGAAGACACGTCGAATGGCTTTTCAGCAACAAACGGTGCCAGTGGGGCCAAGATCAATGGGAC-AGCCAAAGC-AAAGCAAGAT-GGTTCCATTCGTCGGCGGCAAAAAGTTGAAGCTGATCAAGTGTCTAACACCACAGATACCCAGGACGATGTTTTTACAGACCCAATTAAGATGACCAAGAGTTTGTTGCCAAGGCCAATTTCTAGTATCCGACAAAACATGGNCACAAGCAACCCAGAGTCCAGCCTGAAGAGCAATGGTTCATTTCTGAGCGGATTTAGATCAGTGCGGAAGTCGNCTAGCACACCAAA-TTTGCAGATGCAGAGAATGGGATCTCTATGTGGTCAAGCTCGGCATGGACTTTCAACCATGAGTCGTTCACGCGACCATTGCTTGATGGCCTTCCGAAACCCACAGCACCTAGGAGGACCAAAGCTGCTTTGGATTGAGCTGCCTGTGGCTGTAGTAGGTTTGTCTG-CGAT-GATCCAACTT-GAATTTG-CCAA-GAAG-AAGCCGGT-GGAAAAT-GGAAGTTGTGG-CTTGGCTTGTTTT--CAGAGTTTTTATTTTGACGG-CAGTTGCACCCTTGACG-CCAGCGCTGCATTCTTCATCTTACCTGTGGCAAAATGTAGAGCTCAATACTTTTCAGTGCCATGGAAGCAAGCGGTGGTTCTGGCATAGAAACTCATATATAATTGTATCAATATACATACATGTATTCTTTACTCTGTTATGTAGATGATGTGCTGGTATATAATTTAGTATAGAGTTTTGAGAAAGAGAGCAGAGAGTTTACAGACAGAGGACCTATATACGGAGTATATCCCATGCATTCTAATTGAGGCATGCAGTTGTGTGATGTCACAGCAAGTGCTACTTTAATTTGAAAAAAAA]

[+] EMBL CA756256             [AGCCATCTCTCTCTCTCATTCCAAGCTAAAGCCAAGCAAGCCGGCCGCCTCCTTCTCCTACCTCCAGCCTTCAGGCAGCTGCTAAATCGAACGCGACGCCGCACCCACCGCGCCCAATTCACCGCCGAGATCTCAACCCCATACCCCATGGGGATCTCCCACCCGCTGTCCGACGACTTCGACGCTTCTCCCGTGCTCTCGCCGCCGCCGCCGCCGTCCTCATGCTGCCCCCCCGCCCACGACGACCACTACCTTGAGCATCAGGTTTCCAGGATGGACACGCTCCCCGGCCTCGCCATCAAGTACGGCGTCGAGATATCTGACATCAAGAGGGCAAACAGTTTGATGACTGACAGCCAGATGTTCGCACACAAAATGTTGCTCATACCTCTACCAGGAAGACCCATGCCATCCTCTGTAAGGCTCAATGGTTCTGGTCAGAANATGAAGAGAGCGTGGGCTCCAAACAATNCAGC AAACAGAGATGTTACGGATTCGCTAGACTCATCCNACTACNATTCTTCTNAGCAGCAAATGTCACTCGCCATGAGCACCTTGCAGTCCTATTATGGTCTAACTCCTNCAAATGGGGCTATGACAGATGCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CF308446             [                                                                                                                                                                                                                                                                AGCATCAGGTTTCCAGGATGGACACGCTCCCCGGCCTCGCCATCAAGTACGGCGTCGAGATATCTGACATCAAGGGGGCAAACAGTTTGATGACTGGCAGCCAGATGTTCGCACACAAAATGTTGCTCATACCTCTACCAGGAAGACCCATGCCATCCTCTGTAAGGCTCAATGGTTCTGGTCAGAAAATGAAGAGAGCGTGGGCTCCAAACAAT CAGCAAAACAGAGATGTTACGGATTCGCTAGACTCATCCAACTACAATTCTTCTAAGCAGCAAATGTCACTCGCCATGAGCACCTTGCAGTCCTATTATGGTCTAACTCCTCAAAATGGGGCTATGACAGATGCTGGCACTGAGATGTCCTTGTACAGTAAGGGCAGTTTGGAGCGTATCAACAGTGAAACATTGGTCACTTCATCTAGATTACCAGACACACATAATACCGACAGAAGTAGGAACTCTGAAGACACGTCGAATGGCTTTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL OSR02201A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GATTACCAGACACACATAATACCGACAGAAGTAGGAACTCTGAAGACACGTCGAATGGCTTTTCAGCAACAAACGGTGCCAGTGGGGCCAAGATCAATGGGAC AGCCAAAGC AAAGCAAGAT GGTTCCATTCGTCGGCGGCAAAAAGTTGAAGCTGATCAAGTGTCTAACACCACAGATACCCAGGACGATGTTTTTACAGACCCAATTAAGATGACCAAGAGTTTGTTGCCAAGGCCAATTTCTAGTATCCGACAAAACATGGNCACAAGCAACCCAGAGTCCAGCCTGAAGAGCAATGGTTCATTTCTGAGCGGATTTAGATCAGTGCGGAAGTCGNCTAGCACACCAAA TTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL OSS4328A             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ncGTTCCATTGGGCCAAAGATCAATGGGACAANCCAAACCAAAAGCAAGATGGGTTCCATTCGNCGGCGGCAAAAAGTTGAAGCTGATCAAGTGTCTAACACCACAGATACCCAGGACGATGTTTTTACAGACCCAATTAAGATGACCAAGAGTTTGTTGCCAAGGCCAATTTCTAGTATCCGACAAAACATGGACACAAGCAACCCAGAGTCCAGCCTGAAGAGCAATGGTTCATTTCTGAGCGGATTTAGATCAGTGCGGAAGTCGCCTAGCACACCAAACTTTGCAGATGCAGAGAATGGGATCTCTATGTGGTCAAGCTCGGCATGGACTTTCAACCATGAGTCGTTCACGCGACCATTGCTTGATGGCCTTCCGAAACCCACAGCACCTAGGAGGACCAAAGCTGCTTTGGATTGAGCTGCCTGTGGCTGTAGT                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CF308447             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ac TTTGCAGATGCAGAGAATGGGATCTCTATGTGGTCAAGCTCGGCATGGACTTTCAACCATGAGTCGTTCACGCGACCATTGCTTGATGGCCTTCCGAAACCCACAGCACCTAGGAGGACCAAAGCTGCTTTGGATTGAGCTGCCTGTGGCTGTAGTAGGTTTGTCTG CGAT GATCCAACTT GAATTTG CCAA GAAG AAGCCGGT GGAAAAT GGAAGTTGTGG CTTGGCTTGTTTT  CAGAGTTTTTATTTTGACGG CAGTTGCACCCTTGACG CCAGCGCTGCATTCTTCATCTTACCTGTGGCAAAATGTAGAGCTCAATACTTTTCAGTGCCATGGAAGCAAGCGGTGGTTCTGGCATAGAAACTCATATATAATTGTATCAATATACATACATGTATTCTTTACTCTGTTATGTAGATGATGTGCTGGTATATAATTTAGTATAGAGTTTTGAGAAAGAGAGCAGAGAGTTTACAGACAGAGGACCTATATACGGAGTATATCCCATGCATTCTAATTGAGGCATGCAGTTGTGTGATGTCACAGCAAGTGCTACTTTAATTTGAAAAAA  ]
[+] EMBL AU101599             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               cCTGCCGATGGACCCAACTTGGAATTTGCCCAAGGAAGAAACCCGGTGGGAAAATGGGAAGTTGTGGCCTTGGCTTGTTTTTCCAGAGTTTTTATTTTGACGGCCAGTTGCACCCTTGACGCCCAGCGCTGCATTCTTCATCTTACCTGTGGCAAAATGTAGAGCTCAATACTTTTCAGTGCCATGGAAGCAAGCGGTGGTTCTGGCATAGAAACTCATATATAATTGTATCAATATACATACATGTATTCTTTACTCTGTTATGTAGATGATGTGCTGGTATATAATTTAGTATAGAGTTTTGAGAAAGAGAGCAGAGAGTTTACAGACAGAGGACCTATATACGGAGTATATCCCATGCATTCTAATTGAGGCATGCAGTTGTGTGATGTCACAGCAAGTGCTACTCTAATTTGATAAAAAA]




>consensus_9589#0
AGCCATCTCTCTCTCTCATTCCAAGCTAAAGCCAAGCAAGCCGGCCGCCTCCTTCTCCTA
CCTCCAGCCTTCAGGCAGCTGCTAAATCGAACGCGACGCCGCACCCACCGCGCCCAATTC
ACCGCCGAGATCTCAACCCCATACCCCATGGGGATCTCCCACCCGCTGTCCGACGACTTC
GACGCTTCTCCCGTGCTCTCGCCGCCGCCGCCGCCGTCCTCATGCTGCCCCCCCGCCCAC
GACGACCACTACCTTGAGCATCAGGTTTCCAGGATGGACACGCTCCCCGGCCTCGCCATC
AAGTACGGCGTCGAGATATCTGACATCAAGAGGGCAAACAGTTTGATGACTGACAGCCAG
ATGTTCGCACACAAAATGTTGCTCATACCTCTACCAGGAAGACCCATGCCATCCTCTGTA
AGGCTCAATGGTTCTGGTCAGAANATGAAGAGAGCGTGGGCTCCAAACAATNCAGCAAAC
AGAGATGTTACGGATTCGCTAGACTCATCCNACTACNATTCTTCTNAGCAGCAAATGTCA
CTCGCCATGAGCACCTTGCAGTCCTATTATGGTCTAACTCCTNCAAATGGGGCTATGACA
GATGCTGGCACTGAGATGTCCTTGTACAGTAAGGGCAGTTTGGAGCGTATCAACAGTGAA
ACATTGGTCACTTCATCTAGATTACCAGACACACATAATACCGACAGAAGTAGGAACTCT
GAAGACACGTCGAATGGCTTTTCAGCAACAAACGGTGCCAGTGGGGCCAAGATCAATGGG
ACAGCCAAAGCAAAGCAAGATGGTTCCATTCGTCGGCGGCAAAAAGTTGAAGCTGATCAA
GTGTCTAACACCACAGATACCCAGGACGATGTTTTTACAGACCCAATTAAGATGACCAAG
AGTTTGTTGCCAAGGCCAATTTCTAGTATCCGACAAAACATGGNCACAAGCAACCCAGAG
TCCAGCCTGAAGAGCAATGGTTCATTTCTGAGCGGATTTAGATCAGTGCGGAAGTCGNCT
AGCACACCAAATTTGCAGATGCAGAGAATGGGATCTCTATGTGGTCAAGCTCGGCATGGA
CTTTCAACCATGAGTCGTTCACGCGACCATTGCTTGATGGCCTTCCGAAACCCACAGCAC
CTAGGAGGACCAAAGCTGCTTTGGATTGAGCTGCCTGTGGCTGTAGTAGGTTTGTCTGCG
ATGATCCAACTTGAATTTGCCAAGAAGAAGCCGGTGGAAAATGGAAGTTGTGGCTTGGCT
TGTTTTCAGAGTTTTTATTTTGACGGCAGTTGCACCCTTGACGCCAGCGCTGCATTCTTC
ATCTTACCTGTGGCAAAATGTAGAGCTCAATACTTTTCAGTGCCATGGAAGCAAGCGGTG
GTTCTGGCATAGAAACTCATATATAATTGTATCAATATACATACATGTATTCTTTACTCT
GTTATGTAGATGATGTGCTGGTATATAATTTAGTATAGAGTTTTGAGAAAGAGAGCAGAG
AGTTTACAGACAGAGGACCTATATACGGAGTATATCCCATGCATTCTAATTGAGGCATGC
AGTTGTGTGATGTCACAGCAAGTGCTACTTTAATTTGAAAAAAAA
clustalw multiple alignements is not computed in this case