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Oryza sativa
cluster # 9589 cluster # 9589       Sequences # 6       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9589#0 length = 1605 sequences # 6  

consensusID : consensus_9589#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1605
fasta sequence
                              [AGCCATCTCTCTCTCTCATTCCAAGCTAAAGCCAAGCAAGCCGGCCGCCTCCTTCTCCTACCTCCAGCCTTCAGGCAGCTGCTAAATCGAACGCGACGCCGCACCCACCGCGCCCAATTCACCGCCGAGATCTCAACCCCATACCCCATGGGGATCTCCCACCCGCTGTCCGACGACTTCGACGCTTCTCCCGTGCTCTCGCCGCCGCCGCCGCCGTCCTCATGCTGCCCCCCCGCCCACGACGACCACTACCTTGAGCATCAGGTTTCCAGGATGGACACGCTCCCCGGCCTCGCCATCAAGTACGGCGTCGAGATATCTGACATCAAGAGGGCAAACAGTTTGATGACTGACAGCCAGATGTTCGCACACAAAATGTTGCTCATACCTCTACCAGGAAGACCCATGCCATCCTCTGTAAGGCTCAATGGTTCTGGTCAGAANATGAAGAGAGCGTGGGCTCCAAACAATNCAGC-AAACAGAGATGTTACGGATTCGCTAGACTCATCCNACTACNATTCTTCTNAGCAGCAAATGTCACTCGCCATGAGCACCTTGCAGTCCTATTATGGTCTAACTCCTNCAAATGGGGCTATGACAGATGCTGGCACTGAGATGTCCTTGTACAGTAAGGGCAGTTTGGAGCGTATCAACAGTGAAACATTGGTCACTTCATCTAGATTACCAGACACACATAATACCGACAGAAGTAGGAACTCTGAAGACACGTCGAATGGCTTTTCAGCAACAAACGGTGCCAGTGGGGCCAAGATCAATGGGAC-AGCCAAAGC-AAAGCAAGAT-GGTTCCATTCGTCGGCGGCAAAAAGTTGAAGCTGATCAAGTGTCTAACACCACAGATACCCAGGACGATGTTTTTACAGACCCAATTAAGATGACCAAGAGTTTGTTGCCAAGGCCAATTTCTAGTATCCGACAAAACATGGNCACAAGCAACCCAGAGTCCAGCCTGAAGAGCAATGGTTCATTTCTGAGCGGATTTAGATCAGTGCGGAAGTCGNCTAGCACACCAAA-TTTGCAGATGCAGAGAATGGGATCTCTATGTGGTCAAGCTCGGCATGGACTTTCAACCATGAGTCGTTCACGCGACCATTGCTTGATGGCCTTCCGAAACCCACAGCACCTAGGAGGACCAAAGCTGCTTTGGATTGAGCTGCCTGTGGCTGTAGTAGGTTTGTCTG-CGAT-GATCCAACTT-GAATTTG-CCAA-GAAG-AAGCCGGT-GGAAAAT-GGAAGTTGTGG-CTTGGCTTGTTTT--CAGAGTTTTTATTTTGACGG-CAGTTGCACCCTTGACG-CCAGCGCTGCATTCTTCATCTTACCTGTGGCAAAATGTAGAGCTCAATACTTTTCAGTGCCATGGAAGCAAGCGGTGGTTCTGGCATAGAAACTCATATATAATTGTATCAATATACATACATGTATTCTTTACTCTGTTATGTAGATGATGTGCTGGTATATAATTTAGTATAGAGTTTTGAGAAAGAGAGCAGAGAGTTTACAGACAGAGGACCTATATACGGAGTATATCCCATGCATTCTAATTGAGGCATGCAGTTGTGTGATGTCACAGCAAGTGCTACTTTAATTTGAAAAAAAA]

[+] EMBL CA756256             [AGCCATCTCTCTCTCTCATTCCAAGCTAAAGCCAAGCAAGCCGGCCGCCTCCTTCTCCTACCTCCAGCCTTCAGGCAGCTGCTAAATCGAACGCGACGCCGCACCCACCGCGCCCAATTCACCGCCGAGATCTCAACCCCATACCCCATGGGGATCTCCCACCCGCTGTCCGACGACTTCGACGCTTCTCCCGTGCTCTCGCCGCCGCCGCCGCCGTCCTCATGCTGCCCCCCCGCCCACGACGACCACTACCTTGAGCATCAGGTTTCCAGGATGGACACGCTCCCCGGCCTCGCCATCAAGTACGGCGTCGAGATATCTGACATCAAGAGGGCAAACAGTTTGATGACTGACAGCCAGATGTTCGCACACAAAATGTTGCTCATACCTCTACCAGGAAGACCCATGCCATCCTCTGTAAGGCTCAATGGTTCTGGTCAGAANATGAAGAGAGCGTGGGCTCCAAACAATNCAGC AAACAGAGATGTTACGGATTCGCTAGACTCATCCNACTACNATTCTTCTNAGCAGCAAATGTCACTCGCCATGAGCACCTTGCAGTCCTATTATGGTCTAACTCCTNCAAATGGGGCTATGACAGATGCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CF308446             [                                                                                                                                                                                                                                                                AGCATCAGGTTTCCAGGATGGACACGCTCCCCGGCCTCGCCATCAAGTACGGCGTCGAGATATCTGACATCAAGGGGGCAAACAGTTTGATGACTGGCAGCCAGATGTTCGCACACAAAATGTTGCTCATACCTCTACCAGGAAGACCCATGCCATCCTCTGTAAGGCTCAATGGTTCTGGTCAGAAAATGAAGAGAGCGTGGGCTCCAAACAAT CAGCAAAACAGAGATGTTACGGATTCGCTAGACTCATCCAACTACAATTCTTCTAAGCAGCAAATGTCACTCGCCATGAGCACCTTGCAGTCCTATTATGGTCTAACTCCTCAAAATGGGGCTATGACAGATGCTGGCACTGAGATGTCCTTGTACAGTAAGGGCAGTTTGGAGCGTATCAACAGTGAAACATTGGTCACTTCATCTAGATTACCAGACACACATAATACCGACAGAAGTAGGAACTCTGAAGACACGTCGAATGGCTTTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL OSR02201A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GATTACCAGACACACATAATACCGACAGAAGTAGGAACTCTGAAGACACGTCGAATGGCTTTTCAGCAACAAACGGTGCCAGTGGGGCCAAGATCAATGGGAC AGCCAAAGC AAAGCAAGAT GGTTCCATTCGTCGGCGGCAAAAAGTTGAAGCTGATCAAGTGTCTAACACCACAGATACCCAGGACGATGTTTTTACAGACCCAATTAAGATGACCAAGAGTTTGTTGCCAAGGCCAATTTCTAGTATCCGACAAAACATGGNCACAAGCAACCCAGAGTCCAGCCTGAAGAGCAATGGTTCATTTCTGAGCGGATTTAGATCAGTGCGGAAGTCGNCTAGCACACCAAA TTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL OSS4328A             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ncGTTCCATTGGGCCAAAGATCAATGGGACAANCCAAACCAAAAGCAAGATGGGTTCCATTCGNCGGCGGCAAAAAGTTGAAGCTGATCAAGTGTCTAACACCACAGATACCCAGGACGATGTTTTTACAGACCCAATTAAGATGACCAAGAGTTTGTTGCCAAGGCCAATTTCTAGTATCCGACAAAACATGGACACAAGCAACCCAGAGTCCAGCCTGAAGAGCAATGGTTCATTTCTGAGCGGATTTAGATCAGTGCGGAAGTCGCCTAGCACACCAAACTTTGCAGATGCAGAGAATGGGATCTCTATGTGGTCAAGCTCGGCATGGACTTTCAACCATGAGTCGTTCACGCGACCATTGCTTGATGGCCTTCCGAAACCCACAGCACCTAGGAGGACCAAAGCTGCTTTGGATTGAGCTGCCTGTGGCTGTAGT                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CF308447             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ac TTTGCAGATGCAGAGAATGGGATCTCTATGTGGTCAAGCTCGGCATGGACTTTCAACCATGAGTCGTTCACGCGACCATTGCTTGATGGCCTTCCGAAACCCACAGCACCTAGGAGGACCAAAGCTGCTTTGGATTGAGCTGCCTGTGGCTGTAGTAGGTTTGTCTG CGAT GATCCAACTT GAATTTG CCAA GAAG AAGCCGGT GGAAAAT GGAAGTTGTGG CTTGGCTTGTTTT  CAGAGTTTTTATTTTGACGG CAGTTGCACCCTTGACG CCAGCGCTGCATTCTTCATCTTACCTGTGGCAAAATGTAGAGCTCAATACTTTTCAGTGCCATGGAAGCAAGCGGTGGTTCTGGCATAGAAACTCATATATAATTGTATCAATATACATACATGTATTCTTTACTCTGTTATGTAGATGATGTGCTGGTATATAATTTAGTATAGAGTTTTGAGAAAGAGAGCAGAGAGTTTACAGACAGAGGACCTATATACGGAGTATATCCCATGCATTCTAATTGAGGCATGCAGTTGTGTGATGTCACAGCAAGTGCTACTTTAATTTGAAAAAA  ]
[+] EMBL AU101599             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               cCTGCCGATGGACCCAACTTGGAATTTGCCCAAGGAAGAAACCCGGTGGGAAAATGGGAAGTTGTGGCCTTGGCTTGTTTTTCCAGAGTTTTTATTTTGACGGCCAGTTGCACCCTTGACGCCCAGCGCTGCATTCTTCATCTTACCTGTGGCAAAATGTAGAGCTCAATACTTTTCAGTGCCATGGAAGCAAGCGGTGGTTCTGGCATAGAAACTCATATATAATTGTATCAATATACATACATGTATTCTTTACTCTGTTATGTAGATGATGTGCTGGTATATAATTTAGTATAGAGTTTTGAGAAAGAGAGCAGAGAGTTTACAGACAGAGGACCTATATACGGAGTATATCCCATGCATTCTAATTGAGGCATGCAGTTGTGTGATGTCACAGCAAGTGCTACTCTAATTTGATAAAAAA]


>consensus_9589#0 AGCCATCTCTCTCTCTCATTCCAAGCTAAAGCCAAGCAAGCCGGCCGCCTCCTTCTCCTA CCTCCAGCCTTCAGGCAGCTGCTAAATCGAACGCGACGCCGCACCCACCGCGCCCAATTC ACCGCCGAGATCTCAACCCCATACCCCATGGGGATCTCCCACCCGCTGTCCGACGACTTC GACGCTTCTCCCGTGCTCTCGCCGCCGCCGCCGCCGTCCTCATGCTGCCCCCCCGCCCAC GACGACCACTACCTTGAGCATCAGGTTTCCAGGATGGACACGCTCCCCGGCCTCGCCATC AAGTACGGCGTCGAGATATCTGACATCAAGAGGGCAAACAGTTTGATGACTGACAGCCAG ATGTTCGCACACAAAATGTTGCTCATACCTCTACCAGGAAGACCCATGCCATCCTCTGTA AGGCTCAATGGTTCTGGTCAGAANATGAAGAGAGCGTGGGCTCCAAACAATNCAGCAAAC AGAGATGTTACGGATTCGCTAGACTCATCCNACTACNATTCTTCTNAGCAGCAAATGTCA CTCGCCATGAGCACCTTGCAGTCCTATTATGGTCTAACTCCTNCAAATGGGGCTATGACA GATGCTGGCACTGAGATGTCCTTGTACAGTAAGGGCAGTTTGGAGCGTATCAACAGTGAA ACATTGGTCACTTCATCTAGATTACCAGACACACATAATACCGACAGAAGTAGGAACTCT GAAGACACGTCGAATGGCTTTTCAGCAACAAACGGTGCCAGTGGGGCCAAGATCAATGGG ACAGCCAAAGCAAAGCAAGATGGTTCCATTCGTCGGCGGCAAAAAGTTGAAGCTGATCAA GTGTCTAACACCACAGATACCCAGGACGATGTTTTTACAGACCCAATTAAGATGACCAAG AGTTTGTTGCCAAGGCCAATTTCTAGTATCCGACAAAACATGGNCACAAGCAACCCAGAG TCCAGCCTGAAGAGCAATGGTTCATTTCTGAGCGGATTTAGATCAGTGCGGAAGTCGNCT AGCACACCAAATTTGCAGATGCAGAGAATGGGATCTCTATGTGGTCAAGCTCGGCATGGA CTTTCAACCATGAGTCGTTCACGCGACCATTGCTTGATGGCCTTCCGAAACCCACAGCAC CTAGGAGGACCAAAGCTGCTTTGGATTGAGCTGCCTGTGGCTGTAGTAGGTTTGTCTGCG ATGATCCAACTTGAATTTGCCAAGAAGAAGCCGGTGGAAAATGGAAGTTGTGGCTTGGCT TGTTTTCAGAGTTTTTATTTTGACGGCAGTTGCACCCTTGACGCCAGCGCTGCATTCTTC ATCTTACCTGTGGCAAAATGTAGAGCTCAATACTTTTCAGTGCCATGGAAGCAAGCGGTG GTTCTGGCATAGAAACTCATATATAATTGTATCAATATACATACATGTATTCTTTACTCT GTTATGTAGATGATGTGCTGGTATATAATTTAGTATAGAGTTTTGAGAAAGAGAGCAGAG AGTTTACAGACAGAGGACCTATATACGGAGTATATCCCATGCATTCTAATTGAGGCATGC AGTTGTGTGATGTCACAGCAAGTGCTACTTTAATTTGAAAAAAAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)