cluster # 9593

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Oryza sativa
cluster # 9593 cluster # 9593 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9593#0 length = 787 sequences # 3

consensus_9593#1 length = 693 sequences # 3

consensusID : consensus_9593#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 787
fasta sequence

                              [GGGTCCGGGCCCCCCCTTTTAGGAAAATTATCCGTTAAGTGTCCCTGTCCATTACCAGTGTAATTCTTTGTTAGAAGATTTTGTGTTTGTATATCCATGCTACATCAGGGAAGTGGTTGGAACTTTTGAAGACAATAATATCACATCCTCTTCATAACAAATCAGCGTCATTTAATCCTTTGCATTATTTTGCACAAGCACCCTGGAAGGGGATTTGCGTAGAAGTACTCCTCTTGCCTTGGACTTCGACCAGATAACCTCTGATATGGACCCCCAAGTCTGTTTTCATGATGTATCTTCACTTCACTTTGGAACTCATTCCATGTTAGTGTACCTTCATCAAGCTTGTCAATGAGTCCCACAAGCTTCTGCCTGTCTGGGTTGATGGTTTTTTGGAATCCTTCAAATCTTCTGTGACCCTGTACTGCTTTAGCCATATTTCCATCATACGTATACACAAAAACATCACTTTGGACGGCTACATTATAGTCCAAGGCAGCTAATCTGTTTTGGTATAGCTTGAAAGGCTCTAACTCATCTACCGTTGCCAGACTATAATGTGTATATATGTTTGGATATTCAGCCTTTAATGAATCCATGCTATGTCCACCATATATTTCACCTGCTACAATATAGATCTTTGTGCTGGAAGGATAGCCCATAGCTTTGAGGAAAAGAGCTACTTCACGAGGAGTCATAGGGCAGCGTCCTTGGAGTCTCCTCTCCCTACTGGTGATTTCCTTCTCTTTCCAGGGCCGCACGTTGAGTCTCATTTCTCTCAGCTCAT]

[+] EMBL CB622929             [GGGTCCGGGCCCCCCCTTTTAGGAAAATTATCCGTTAAGTGTCCCTGTCCATTACCAGTGTAATTCTTTGTTCTATTATTTTGTGTTTGTATATCCATGCTACATCAGGGAAGTGGTTGGAACTTTTGAAGACAATAATATCACATCCTCTTCATAACAAATCAGCGTCATTTAATCCTTTGCATTATTTTGCACAAGCACCCTGGAAGGGGATTTGCGTAGAAGTACTCCTCTTGCCTTGGACTTCGACCAGATAACCTCTGATATGGACCCCCAAGTCTGTTTTCATGATGTATCTTCACTTCACTTTGGAACTCATTCCATGTTAGTGTACCTTCATCAAGCTTGTCAATGAGTCCCACAAGCTTCTGCCTGTCTGGGTTGATGGTTTTTTGGAATCCTTCAAATCTTCTGTGACCCTGTACTGCTTTAGCCATATTTCCATCATACGTATACACAAAAACATCACTTTGGACGGCTACATTATAGTCCAAGGCAGCTAATCTGTTTTGGTATAGCTTGAAAGGCTCTAACTCATCTACCGTTGCCAGACTATAATGTGTATATATGTTTGGATATTCAGCCTTTAATGAATCCATGCTATGTCCACCATATATTTCACCTGCTACAATATAGATCTTTGTGCTGGAAGGATAGCCCATAGCTTTGAGGAAAAGAGCTACTTCACGAGGAGTCATAGGGCAGCGTCCTTGGAGTCTCCT                                                                 ]
[+] EMBL CB626984             [                                                       CAGTGTAATTCTTTGTTAGAAGATTTTGTGTTTGTATATCCATGCTACATCAAGGAAGTGGTTGGAACTTTTGAAGACAATAATATCACATCCTCTTCATAACAAATCAGCGTCATTTAATCCTTTGCATTATTTTGCACAAGCACCCTGGAAGGGGATTTGCGTAAAAGTACTCCTCTTGCCTTGGACTTCGACCAGATAACCTCTGATATGGACCCCCAAGTCTGTTTTCATGATGTATCTTCACTTCACTTTGGAACTCATTCCATGTTAGTGTACCTTCATCAAGCTTGTCAATGAGTCCCACAAGCTTCTGCCTGTCTGGGTTGATGGTTTTTTGGAATCCTTCAAATCTTCTGTGACCCTGTACTGCTTTAGCCATATTTCCATCATACGTATACACAAAAACATCACTTTGGACGGCTACATTATAGTCCAAGGCAGCTAATCTGTTTTGGTATAACTTGAAAGGCTCTAACTCATCTACCGTTGCCAGACTATAATGTGTATATATGTTTGGATATTCAGCCTTTAATGAATCCATGCTATGTCCACCATATATTTCACCTGCTACAATATAGATCTTTGTGCTGGAAGGATAGCCCATATCTTTGAGGAAAAGAGCTACTTCACGAGGAGTCATAGGGCAGCGTCCTTGGAGTCTCCTCTCCCTACTGGTGATTTCCTTCTCTTTCCAGGGCCGCACGTTGAGTCTCATTTCTCTCAGCTCAT]
[+] EMBL CB626965             [                                                       CAGTGTAATTCTTTGTTAAAACATTTTGTGTTTGTATATCCATGCTACATCAGGGAAGTGGTTGGAACTTTTGAAGACAATAATATCACATCCTCTTCATAACAAATCAGCGTCATTTAATCCTTTGCATTATTTTGCACAAGCACCCTGGAAGGGGATTTGCGTAGAAGTACTCCTCTTGCCTTGGACTTCGACCAGATAACCTCTGATATGGACCCCCAAGTCTGTTTTCATGATGTATCTTCACTTCACTTTGGAACTCATTCCATGTTAGTGTACCTTCATCAAGCTTGTCAATGAGTCCCACAAGCTTCTGCCTGTCTGGGTTGATGGTTTTTTGGAATCCTTCAAATCTTCTGTGACCCTGTACTGCTTTAGCCATATTTCCATCATACGTATACACAAAAACATCACTTTGGACGGCTACATTATAGTCCAAGGCAGCTAATCTGTTTTGGTATAGCTTGAAAGGCTCTAACTCATCTACCGTTGCCAGACTATAATGTGTATATATGTTTGGATATTCAGCCTTTAATGAATCCATGCTATGTCCACCATATATTTCACCTGCTACAATATAGATCTTTGTGCTGGAAGGATAGCCCATAGCTTTGAGGAAAAGAGCTACTTCACGAGGAGTCATAGGGCAGCGTCCTTGGAGTCTCCT                                                                 ]




>consensus_9593#0
GGGTCCGGGCCCCCCCTTTTAGGAAAATTATCCGTTAAGTGTCCCTGTCCATTACCAGTG
TAATTCTTTGTTAGAAGATTTTGTGTTTGTATATCCATGCTACATCAGGGAAGTGGTTGG
AACTTTTGAAGACAATAATATCACATCCTCTTCATAACAAATCAGCGTCATTTAATCCTT
TGCATTATTTTGCACAAGCACCCTGGAAGGGGATTTGCGTAGAAGTACTCCTCTTGCCTT
GGACTTCGACCAGATAACCTCTGATATGGACCCCCAAGTCTGTTTTCATGATGTATCTTC
ACTTCACTTTGGAACTCATTCCATGTTAGTGTACCTTCATCAAGCTTGTCAATGAGTCCC
ACAAGCTTCTGCCTGTCTGGGTTGATGGTTTTTTGGAATCCTTCAAATCTTCTGTGACCC
TGTACTGCTTTAGCCATATTTCCATCATACGTATACACAAAAACATCACTTTGGACGGCT
ACATTATAGTCCAAGGCAGCTAATCTGTTTTGGTATAGCTTGAAAGGCTCTAACTCATCT
ACCGTTGCCAGACTATAATGTGTATATATGTTTGGATATTCAGCCTTTAATGAATCCATG
CTATGTCCACCATATATTTCACCTGCTACAATATAGATCTTTGTGCTGGAAGGATAGCCC
ATAGCTTTGAGGAAAAGAGCTACTTCACGAGGAGTCATAGGGCAGCGTCCTTGGAGTCTC
CTCTCCCTACTGGTGATTTCCTTCTCTTTCCAGGGCCGCACGTTGAGTCTCATTTCTCTC
AGCTCAT

consensusID : consensus_9593#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 693
fasta sequence

                              [TTTTTTTTTTTTTTTTAAAAAAGAATTTACCATTCATCACTTGTTTCTTCTTGGGTACATCCTGCTCTCTCTATATACATCATACATGCCTATCTGAATAAAGCTGCAATTTTGGGATGAATACAAAATATAAAAAGAGGACAGACTGTACATATGGAGTGTGTGAAGTGTGAACTACATACATGCACTAAAAAAGGTATTCTTTCAAGCTATCCCATCACTTCTGGCACATCTATGCTTTGCTGGTATTTAAAATCTTTTTTACTCTTCCGTTTCCTGTATACTTGAATAAATAATCAACTGGAGATGCAGATCTCAGACGATAATAAATGGACCTGCCCCTCCTGCTTCCTTTTCTATGAATGATGGCTGCATACACTGTTAATCTAGGAAAATTATCTGTGGGCTGTCCCTGTCCATTACCAGTGTAATTCTTTGTTAGAAGATTTTGTGTTTGTATATCCATGCTACATCAGGGAAGTGGTTGGAACTTTTGAAGACAATAATATCACATCCTCTTCATAACAAATCAGCGTCATTTAATCCTTTGCATTCTTTTGCACAAGCAGCCTGGAAGGGGATTTGCGTAGAAGTACTCCTCTTGCCTAGGACTTCGACCAGATAACCTCTGATATGGACCCCCAAGTCTGTTTTCATG-ATGTATCTTCACTTCACTTTGGGAACTCATTCCAT]

[-] EMBL AU108570             [TTTTTTTTTTTTTTTTAAAAAAGAATTTACCATTCATCACTTGTTTCTTCTTGGGTACATCCTGCTCTCTCTATATACATCATACATGCCTATCTGAATAAAGCTGCAATTTTGGGATGAATACAAAATATAAAAAGAGGACAGACTGTACATATGGAGTGTGTGAAGTGTGAACTACATACATGCACTAAAAAAGGTATTCTTTCAAGCTATCCCATCACTTCTGGCACATCTATGCTTTGCTGGTATTTAAAATCTTTTTTACTCTTCCGTTTCCTGTATACTTGAATAAATAATCAACTGGAGATGCAGATCTCAGACGATAATAAATGGACCTGCCCCTCCTGCTTCCTTTTCTATGAATGATGGCTGCATACACTGTTAATCTAGGAAAATTATCTGTGGGCTGTCCCTGTCCATTACCAGTGTAATTCTTTGTTAGAAGATTTTGTGTTTGTATATCCATGCTACATCAGGGAAGTGGTTGGAACTTTTGAAGACAATAATATCACATCCTCTTCATAACAAATCAGCGTCATTTAATCCTTTGCATTCTTTTGCACAAGCAGCCTGGAAGGGGATTTGCGTAGAAGTACTCCTCTTGCCTAGGACTTCGACCAGATAACCTCTGATATNGACCCCCAAGTCTGTTTTCATGAATGTAACTTCACTTCACTTTGGGAACTCATTCCAT]
[+] EMBL CB681018             [              cTAAAAAAAAATTTACCATTCATCACTTGTTTCTTCTTGGGTACATCCTGCTCTCTCTATATACATCATACATGCCTATCTGAATAAAGCTGCAATTTTGGGATGAATACAAAATATAAAAAGAGGACCGACTGTACATATGGAGTGGGTGAAGTGGGAACTACATACATGCACTAAAAAAGGGATTCTTTCAAGCTATCCCATCACTTCTGGCACATCTATGCTTTGCTGGGATTTAAAATCTTTTTTACTCTTCCGTTTCCTGGATACTTGAATAAATAATCAACTGGAGATGCAAATCTCAAACGAAAATAAATGGACCTGCCCCTCCTGCTTCCTTTTCTATGAATGATGGCTGCATACACTGGTAATCTAAGAAAATTATCTGGGGGCTGTCCCTGTCCATTACCAGGGTAATTCTTTGTTAAAAAAATTTGTGTTTGTATATCCATGCTACATCAGGGAAGTGGTTGGAACTTTTGAAAACAATAATATCACATCCTCTTCATAACAAATCAGCGGCATTTAATCCTTTGCATTCTTTTGCACAAACAGCCTGGAAGGGGATTTGCGTAAAAATACTCCTCTTGCCTAGGACTTCCACCAGATAACCTCTGATATGGACCCCCAAGTCTGTTTTCATG ATGTATCTTCAC                       ]
[-] EMBL CB681017             [                  AAAAGAATTTACCATTCATCACTTGTTTCTTCTTGGGTACATCCTGCTCTCTCTATATACATCATACATGCCTATCTGAATAAAGCTGCAATTTTGGGATGAATACAAAATATAAAAAGAGGACAGACTGTACATATGGAGTGTGTGAAGTGTGAACTACATACATGCACTAAAAAAGGTATTCTTTCAAGCTATCCCATCACTTCTGGCACATCTATGCTTTGCTGGTATTTAAAATCTTTTTTACTCTTCCGTTTCCTGTATACTTGAATAAATAATCAACTGGAGATGCAGATCTCAGACGATAATAAATGGACCTGCCCCTCCTGCTTCCTTTTCTATGAATGATGGCTGCATACACTGTTAATCTAGGAAAATTATCTGTGGGCTGTCCCTGTCCATTACCAGTGTAATTCTTTGTTAGAAGATTTTGTGTTTGTATATCCATGCTACATCAGGGAAGTGGTTGGAACTTTTGAAGACAATAATATCACATCCTCTTCATAACAAATCAGCGTCATTTAATCCTTTGCATTCTTTTGCACAAGCAGCCTGGAAGGGGATTTGCGTAGAAGTACTCCTCTTGCCTAGGACTTCGACCAGATAACCTCTGATATGGACCCCCAAGTCTGTTTTCATG AT AATGTTCACT                      ]




>consensus_9593#1
TTTTTTTTTTTTTTTTAAAAAAGAATTTACCATTCATCACTTGTTTCTTCTTGGGTACAT
CCTGCTCTCTCTATATACATCATACATGCCTATCTGAATAAAGCTGCAATTTTGGGATGA
ATACAAAATATAAAAAGAGGACAGACTGTACATATGGAGTGTGTGAAGTGTGAACTACAT
ACATGCACTAAAAAAGGTATTCTTTCAAGCTATCCCATCACTTCTGGCACATCTATGCTT
TGCTGGTATTTAAAATCTTTTTTACTCTTCCGTTTCCTGTATACTTGAATAAATAATCAA
CTGGAGATGCAGATCTCAGACGATAATAAATGGACCTGCCCCTCCTGCTTCCTTTTCTAT
GAATGATGGCTGCATACACTGTTAATCTAGGAAAATTATCTGTGGGCTGTCCCTGTCCAT
TACCAGTGTAATTCTTTGTTAGAAGATTTTGTGTTTGTATATCCATGCTACATCAGGGAA
GTGGTTGGAACTTTTGAAGACAATAATATCACATCCTCTTCATAACAAATCAGCGTCATT
TAATCCTTTGCATTCTTTTGCACAAGCAGCCTGGAAGGGGATTTGCGTAGAAGTACTCCT
CTTGCCTAGGACTTCGACCAGATAACCTCTGATATGGACCCCCAAGTCTGTTTTCATGAT
GTATCTTCACTTCACTTTGGGAACTCATTCCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9593#0      GGGTCCGGGCCCCCCCTTTTAGGAAAATTATCCGTTAAGTGTCCCTGTCCA-TTACCAGT 59
consensus_9593#1      --TTTTTTTTTTTTTTTTAAAAAAGAATTTACCATTCATCACTTGTTTCTTCTTGGGTAC 58
                         *            **  *  * ****  ** ** *       * **   **      

consensus_9593#0      GTAATTCTTTGTTAGAAGATTTTGTGTTTGTATATCCATGCTACATCAGGGAAGTGGTTG 119
consensus_9593#1      ATCCTGCTCTCTCTATATACATCATACATGCCTATCTG-AATAAAGCTGCAATTTTGGGA 117
                       *  * ** * *    * *  *  *   **  ****     ** * * *  *  * *   

consensus_9593#0      GAACTTTTGAAGACAATAATATCACATCCTCTTCATAACAAATCAGCGTCATTTAATCCT 179
consensus_9593#1      TGAATACAAAATATAAAAAGAGGACAGACTGTACATATGGAGTGTGTGAAGTGTGA---- 173
                        * *    ** * ** ** *  ***  ** * ****   * *  * *   * * *    

consensus_9593#0      TTGCATTATTTTGCACAAGCACCCTGGAAGGGGATTTGCGTAGAAGTACTCCTCTTGCCT 239
consensus_9593#1      -------ACTACATACATGCACT---AAAAAAGGTATTCTTTCAAGCTATCCCATCACTT 223
                             * *    *** ****     **   * * * * *  ***   ***  *  * *

consensus_9593#0      TGGACTTCGACCAGATAACCTCTGATATGGACCCCCAAGTCTGTTTTCATGATGTATCTT 299
consensus_9593#1      CTGGCA-----CATCTATGCTTTGC--TGGTATTTAAAATCTTTTTTACTCTTCCGTTTC 276
                        * *      **  **  ** **   ***      ** *** ****  *  *   * * 

consensus_9593#0      CACTTCACTTTGGAACTCATTCCA-TGTTAGTGTACCTTCATCAAGCTTGTCAATGAGTC 358
consensus_9593#1      CTGTATACTTGAATAAATAATCAACTGGAGATGCAGATCTCAGACGATAATAAATGGACC 336
                      *  *  ****    *   * ** * **    ** *  *     * * *  * ****   *

consensus_9593#0      CCACAAGCTTCTGCCTGTCTGGGTTGATGGTTTTTTGGAATCCTTCAAATCTTCTGTGAC 418
consensus_9593#1      TGCCCCTCCTGCTTCCTTTTCTATGAATGATGGCTGCATACACTGTTAATCTAGGAAAAT 396
                         *   * *    *  * *   *  *** *   *    *  **   *****      * 

consensus_9593#0      CCTGTACTGCTTTAGCCATATTTCCATCATACGTATACACAAAAACATCACTTTGGACGG 478
consensus_9593#1      TATCTGTGGGCTGTCCC---TGTCCATTACCAGTGTA-------ATTCTTTGTTAGAAGA 446
                        * *   *  *   **   * ***** *   ** **       *       ** ** * 

consensus_9593#0      CTACATTATAGTCCAAGGCAGCTAATCTGTTTTGGTATAGCTTGAAAGGCTCTAACTCAT 538
consensus_9593#1      TTTTGTGTTTGT-----ATATCCATGCTACATCAGGGAAGT------GGTTGGAACT--- 492
                       *   *  * **       * * *  **   *  *   **       ** *  ****   

consensus_9593#0      CTACCGTTGCCAGACTATAATGT-GTATATATGTTTGGATATTCAGCCTTTAATGAATCC 597
consensus_9593#1      ------TTTGAAGACAATAATATCACATCCTCTTCATAACAAATCAGCGTCATTTAATCC 546
                            **   **** ***** *   **     *    * *      * * * * *****

consensus_9593#0      ATGCTATGTCCACCATATATTTCACCTGCTACAATATAGATCTTTGTGCTGGAAGGATAG 657
consensus_9593#1      TTTGCAT-TCTTTTGCACAAGCAGCCTGGAAGGGGATTTG-CGTAGAAGTACTCCTCTTG 604
                       *   ** **      * *     ****  *    **    * * *   *       * *

consensus_9593#0      CCCATAGCTTTGAGGAAAAGAGCTACTTCACGAGGAGTCATAGGGCAGCGTCCTTGGAGT 717
consensus_9593#1      CCTAGGACTTCGACCAGATAACCT--CTGATATGGACCCCCAAGTCTGTTTTCATGATGT 662
                      ** *   *** **  * *  * **   * *   ***  *  * * * *  * * **  **

consensus_9593#0      CTCCTCTCCCTACTG-GTGATTTCCTTCTCTTTCCAGGGCCGCACGTTGAGTCTCATTTC 776
consensus_9593#1      ATCTTCACTTCACTTTGGGAACTCATTCCAT----------------------------- 693
                       ** ** *   ***  * **  ** ***  *                             

consensus_9593#0      TCTCAGCTCAT 787
consensus_9593#1      -----------