cluster # 9598

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Oryza sativa
cluster # 9598 cluster # 9598 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9598#0 length = 867 sequences # 5

consensus_9598#1 length = 484 sequences # 1

consensusID : consensus_9598#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 867
fasta sequence

                              [AAGCAAAGCAAGCGAGCGCCGCCCTCACTCCTCTCACACACTGCACCACACGC-CTAACCAACCACGCGAACGAAGCGCGCGCGCGCTGACGTCATCCTCCTCCGCCGCCATGGCGGCTTCTTCCTCCTCCACCACTCGCCTCATCCCCCTCCTCCTCGTCTTGACCTTCTGCCTCGCTCTCGCCTCGGCGTCGGCGTGGGCGGCGGCGGCGGG-GGATGACGACCTCCTGGCGGCGGCGCGCGAGCCGGGGATGGCCGAGTGGCTGCGCGGCGTGCGGCGGCGGATCCACCGGCACCCCGAGCTGGCGTTCGAGGAGGTCCGCACCAGCGAGCTCGTCCGCGCCGAGCTCGACGCCATCGGCGTCCCCT-ACCAGTGGCCCG-TCGCGCGCACCGGCG-TCGTCGCCACGATCGCCGGCGGCGGC-GGCGGCGATGGCCCCGTCGTCGCGCTCC-GGGCGGACATGGACGCGCTCCCCGTGCAGGAATTGGTAGATTGGGAACACAAGAGCCAGGAAAACGGGAAAATGCATGCTTGCGGCCATGATGCTCACACTGCAATGCTTCTGGGAGCAGCCAAGCTACTTCAGAAACGCAAGAACGAACTCAAGGGCACTGTAAAGCTGGTGTTCCAGCCAGCAGAGGAGGGGAGCGCAGGTGCCTACTATGTTCTTCAGGAAGGCGTCCTCGACGACGTGTCGGCGATGTTTGGGATGCACGTCGATCCGGCTCTTCCGGTGGGCGTGGTTGCAGCCAGGCCTGGGCCATTCGCCGCAACGTCAGGCAGGTTCTTGGCAACTATCACTGGAAAGGGTGGCCATGCTGCA-TCCCCCATGACGCCATTGATCCTGTTGTCGCTGCATCCAATGCCATC]

[+] EMBL AU162711             [AAGCAAAGCAAGCGAGCGCCGCCCTCACTCCTCTCACACACTGCACCACACGC CTAACCAACCACGCGAACGAAGCGCGCGCGCGCTGACGTCATCCTCCTCCGCCGCCATGGC GCTTCTTCCTCCTCCACCACTCGCCTCATCCCCCTCCTCCTCGTCTTGACCTTCTGCCTCGCTCTCGCCTCGGCGTCGGCGTGGGCGGCGGCGGCGGG GGATGACGACCTCCTGGCGGCGGCGCGCGAGCCGGGGATGGCCGAGTGGCTGCGCGGCGTGCGGCGGCGGATCCACCGGCACNCCGAGCTGGCGTTCGAGGAGGTCCGCACCAGCGAGCTCGTCCGCGCCGAGCTCGACGCCATCGGGGTCCCCTAACCAGTGGCCCGTTCGCGCGCANCGGCGTTCGTCGCCAAGAATGACGGCGGGGGCGGGNGGCGATGGGCNCGTCGTCGNGTTCCGGGGGGGAAATGGAa                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CB650409             [              AGCGCCTTTCTAAGTCCTCTCACACACTGCACCACACGCTCTAACCAACCACGCGAACGAAGCGCGCGCGCGCTGACGTCCTCCTCCTCCGCCGCCATGGCGGCTTCTTCCTCCTCCACCACTCGCCTCATCCCCCTCCTCCTCGTCTTGACCTTCTGCCTCGCTCTCGCCTCGGCGTCGGCGTGGGCGGCGGCGGCGGG GGATGACGACCTCCTGGCGGCGGCGCGCGAGCCGGGGATGGCCGAGTGGCTGCGCGGCGTGCGGCGGCGGATCCACCGGCACCCCGAGCTGGCGTTCGAGGAGGTCCGCACCAGCGAGCTCGTCCGCGCCGAGCTCGACGCCATCGGCGTCCCCT ACCAGTGGCCCG TCGCGCGCACCGGCG TCGTCGCCACGATCGCCGGCGGCGGC GGCGGCGATGGCCCCGTCGTCGCGCTCC GGGCGGACATGGACGCGCTCCCCGTGCAGGAATTGGTAGATTGGGAACACAAGAGCCAGGAAAACGGGAAAATGCATGCTTGCGGCCATGATGCTCACACTGCAATGCTTCTGGGAGCAGCCAAGCTACTTCAGAAACGCAAGAACGAACTCAAGGGCACTGTAAAGCTGGTGTTCCAGCCAGCAGAGGAGGGGAGCGCAGGTGCCTACTATGTTCTTCAGGAAGGCGTCCTCGACGACGTGTCGGCGATGTTTGGGATGCACGTCGATCCGGCTCTTCCGGTGGGCGTGGTTGCAGCCAGGCCTGGGCCATTCGCCGCAACGTCAGGCAGGTTCTTGGCAACTATCACTGGAAAGGGTGGCCATGCTGCA TCCCCCATGACGCCATTGATCCTGTTGTCGCTGCATC          ]
[+] EMBL CB640261             [                                      CACTGCACCACACGC CTAACCAACCACGCGAACGAAGCGCGCGCGCGCTGACGTCATCCTCCTCCGCCGCCATGGCGGCTTCTTCCTCCTCCACCACTCGCCTCATCCCCCTCCTCCTCGTCTTGACCTTCTGCCTCGCTCTCGCCTCGGCGTCGGCGTGGGCGGCGGCGGCGGG GGATGACAACCTCCTGGCGGCGGCGCGCGAGCCGGGGATGGCCGAGTGGCTGCGCGGCGTGCGGCGGCGGATCCACCGGCACCCCGAGCTGGCGTTCGAGGAGGTCCGCACCAGCGAGCTCGTCCGCGCCGAGCTCGACGCCATCGGCGTCCCCT ACCAGTGGCCCG TCGCGCGCACCGGCG TCGTCGCCACGATCGCCGGCGGCGGC GGCGGCGATGGCCCCGTCGTCGCGCTCC GGGCGGACATGGACGCGCTCCCCGTGCAGGAATTGGTAGATTGGGAACACAAGAGCCAGGAAAACGGGAAAATGCATGCTTGCGGCCATGATGCTCACACTGCAATGCTTCTGGGAGCAGCCAAGCTACTTCAGAAACGCAAGAACGAACTCAAGGGCACTGTA                                                                                                                                                                                                                                                               ]
[+] EMBL CB639295             [                                       ACTGCACCACACGC CTAACCAACCACGCGAACGAAGCGCGCGCGCGCTGACGTCATCCTCCTCCGCCGCCATGGCGGCTTCTTCCTCCTCCACCACTCGCCTCATCCCCCTCCTCCTCGTCTTGACCTTCTGCCTCGCTCTCGCCTCGGCGTCGGCGTGGGCGGCGGCGGCGGGTGTATTACGACCTCCTGGCGGCGGCGCGCGAGCCGGGGATGGCCGAGTGGCTGCGCGGCGTGCGGCGGCGGATCCACCGGCACCCCGAGCTGGCGTTCGAGGAGGTCCGCACCATCGAGCTCGTCCGCGCCGAGCTCGACGCCATCGGCGTCCCCT ACCAGTGGCCCG TCGCGCGCACCGGCG TCGTCGCCACGATCGCCGGCGGCGGC GGCGGCGATGGCCCCGTCGTCCCGCTCC GGGCGGACATGGACGCGCTCCCCGTGCAGGAATTGGTAG                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CB654671             [                                                                  GCGAACGAAGCGCGCGCGCGCTGACGTCATCCTCCTCCGCCGCCATGGCGGCTTCTTCCTCCTCCACCACTCGCCTCATCCCCCTCCTCCTCGTCTTGACCTTCTGCCTCGCTCTCGCCTCGGCGTCGGCGTGGGCGGCGGCGGCGGG GGATGACGACCTCCTGGCGGCGGCGCGCGAGCCGGGGATGGCCGAGTGGCTGCGCGGCGTGCGGCGGCGGATCCACCGGCACCCCGAGCTGGCGTTCGAGGAGGTCCGCACCAGCGAGCTCGTCCGCGCCGAGCTCGACGCCATCGGCGTCCCCT ACCAGTGGCCCG TCGCGCGCACCGGCG TCGTCGCCACGATCGCCGGCGGCGGC GGCGGCGATGGCCCCGTCGTCGCGCTCC GGGCGGACATGGACGCGCTCCCCGTGCAGGAATTGGTAGATTGGGAACACAAGAGCCAGGAAAACGGGAAAATGCATGCTTGCGGCCATGATGCTCACACTGCAATGCTTCTGGGAGCAGCCAAGCTACTTCAGAAACGCAAGAACGAACTCAAGGGCACTGTAAAGCTGGTGTTCCAGCCAGCAGAGGAGGGGAGCGCAGGTGCCTACTATGTTCTTCAGGAAGGCGTCCTCGACGACGTGTCGGCGATGTTTGGGATGCACGTCGATCCGGCTCTTCCGGTGGGCGTGGTTGCAGCCAGGCCTGGGCCATTCGCCGCAACGTCAGGCAGGTTCTTGGCAACTATCACTGGAAAGGGTGGCCATGCTGCATTCCCCCATGACGCCATTGATCCTGTTGTCGCTGCATCCAATGCCATC]




>consensus_9598#0
AAGCAAAGCAAGCGAGCGCCGCCCTCACTCCTCTCACACACTGCACCACACGCCTAACCA
ACCACGCGAACGAAGCGCGCGCGCGCTGACGTCATCCTCCTCCGCCGCCATGGCGGCTTC
TTCCTCCTCCACCACTCGCCTCATCCCCCTCCTCCTCGTCTTGACCTTCTGCCTCGCTCT
CGCCTCGGCGTCGGCGTGGGCGGCGGCGGCGGGGGATGACGACCTCCTGGCGGCGGCGCG
CGAGCCGGGGATGGCCGAGTGGCTGCGCGGCGTGCGGCGGCGGATCCACCGGCACCCCGA
GCTGGCGTTCGAGGAGGTCCGCACCAGCGAGCTCGTCCGCGCCGAGCTCGACGCCATCGG
CGTCCCCTACCAGTGGCCCGTCGCGCGCACCGGCGTCGTCGCCACGATCGCCGGCGGCGG
CGGCGGCGATGGCCCCGTCGTCGCGCTCCGGGCGGACATGGACGCGCTCCCCGTGCAGGA
ATTGGTAGATTGGGAACACAAGAGCCAGGAAAACGGGAAAATGCATGCTTGCGGCCATGA
TGCTCACACTGCAATGCTTCTGGGAGCAGCCAAGCTACTTCAGAAACGCAAGAACGAACT
CAAGGGCACTGTAAAGCTGGTGTTCCAGCCAGCAGAGGAGGGGAGCGCAGGTGCCTACTA
TGTTCTTCAGGAAGGCGTCCTCGACGACGTGTCGGCGATGTTTGGGATGCACGTCGATCC
GGCTCTTCCGGTGGGCGTGGTTGCAGCCAGGCCTGGGCCATTCGCCGCAACGTCAGGCAG
GTTCTTGGCAACTATCACTGGAAAGGGTGGCCATGCTGCATCCCCCATGACGCCATTGAT
CCTGTTGTCGCTGCATCCAATGCCATC

consensusID : consensus_9598#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 484
fasta sequence

                              [AGGAGGTACTCCATGGCATACCGCGGCACCCCGAGCTGGCGTTCGAGGAAGTCCGCACCAGCGAGCTCGTCCGCGCCGAGCTCGACGCCATCGGCGTCCCCTACCAGTGGCCCGTCGCGCGCACCGGCGTCCTCGCCACGATCGCCGGCGGCGGCGGCGGCGATGGCCCCGTCGTCGCGCTCCGGGCGGACATGGACGCGCTCCCCGTGCAAGAATTGGTAGATTGGGAACACAATAGCCAGGAAAACGGGAAAATGCATGCTTGCGGCCATGATGCTCACACTGCAATGCTTCTGGGAGCAGCCAAGCTACTTCAGAAACGCAAGAACGAACTCAAGGGCACTGTAAAGCTGGTGTTCCAGCCAGCAGAGGAGGGGAGCGCAGGTGCCTACTATGTTCTTCAGGAAGGCGTCCTCGACGACGTGTCGGCGATGTTTGGGATGCACGTCGATCCGGCTCTTCCGGTGGGCGTGGTTGCAGCCAG]

[+] EMBL CB650410             [AGGAGGTACTCCATGGCATACCGCGGCACCCCGAGCTGGCGTTCGAGGAAGTCCGCACCAGCGAGCTCGTCCGCGCCGAGCTCGACGCCATCGGCGTCCCCTACCAGTGGCCCGTCGCGCGCACCGGCGTCCTCGCCACGATCGCCGGCGGCGGCGGCGGCGATGGCCCCGTCGTCGCGCTCCGGGCGGACATGGACGCGCTCCCCGTGCAAGAATTGGTAGATTGGGAACACAATAGCCAGGAAAACGGGAAAATGCATGCTTGCGGCCATGATGCTCACACTGCAATGCTTCTGGGAGCAGCCAAGCTACTTCAGAAACGCAAGAACGAACTCAAGGGCACTGTAAAGCTGGTGTTCCAGCCAGCAGAGGAGGGGAGCGCAGGTGCCTACTATGTTCTTCAGGAAGGCGTCCTCGACGACGTGTCGGCGATGTTTGGGATGCACGTCGATCCGGCTCTTCCGGTGGGCGTGGTTGCAGCCAG]




>consensus_9598#1
AGGAGGTACTCCATGGCATACCGCGGCACCCCGAGCTGGCGTTCGAGGAAGTCCGCACCA
GCGAGCTCGTCCGCGCCGAGCTCGACGCCATCGGCGTCCCCTACCAGTGGCCCGTCGCGC
GCACCGGCGTCCTCGCCACGATCGCCGGCGGCGGCGGCGGCGATGGCCCCGTCGTCGCGC
TCCGGGCGGACATGGACGCGCTCCCCGTGCAAGAATTGGTAGATTGGGAACACAATAGCC
AGGAAAACGGGAAAATGCATGCTTGCGGCCATGATGCTCACACTGCAATGCTTCTGGGAG
CAGCCAAGCTACTTCAGAAACGCAAGAACGAACTCAAGGGCACTGTAAAGCTGGTGTTCC
AGCCAGCAGAGGAGGGGAGCGCAGGTGCCTACTATGTTCTTCAGGAAGGCGTCCTCGACG
ACGTGTCGGCGATGTTTGGGATGCACGTCGATCCGGCTCTTCCGGTGGGCGTGGTTGCAG
CCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9598#0      AAGCAAAGCAAGCGAGCGCCGCCCTCACTCCTCTCACACACTGCACCACACGCCTAACCA 60
consensus_9598#1      ------------------------------------------------------------
                                                                                  

consensus_9598#0      ACCACGCGAACGAAGCGCGCGCGCGCTGACGTCATCCTCCTCCGCCGCCATGGCGGCTTC 120
consensus_9598#1      ------------------------------------------------------------
                                                                                  

consensus_9598#0      TTCCTCCTCCACCACTCGCCTCATCCCCCTCCTCCTCGTCTTGACCTTCTGCCTCGCTCT 180
consensus_9598#1      ------------------------------------------------------------
                                                                                  

consensus_9598#0      CGCCTCGGCGTCGGCGTGGGCGGCGGCGGCGGGGGATGACGACCTCCTGGCGGCGGCGCG 240
consensus_9598#1      ------------------------------------------------------------
                                                                                  

consensus_9598#0      CGAGCCGGGGATGGCCGAGTGGCTGCGCGGCGTGCGGCGGCGGATCCACCGGCACCCCGA 300
consensus_9598#1      --------------------------AGGAGGTACTCCATGGCATACCGCGGCACCCCGA 34
                                                  *  ** *  *   * ** *  ***********

consensus_9598#0      GCTGGCGTTCGAGGAGGTCCGCACCAGCGAGCTCGTCCGCGCCGAGCTCGACGCCATCGG 360
consensus_9598#1      GCTGGCGTTCGAGGAAGTCCGCACCAGCGAGCTCGTCCGCGCCGAGCTCGACGCCATCGG 94
                      *************** ********************************************

consensus_9598#0      CGTCCCCTACCAGTGGCCCGTCGCGCGCACCGGCGTCGTCGCCACGATCGCCGGCGGCGG 420
consensus_9598#1      CGTCCCCTACCAGTGGCCCGTCGCGCGCACCGGCGTCCTCGCCACGATCGCCGGCGGCGG 154
                      ************************************* **********************

consensus_9598#0      CGGCGGCGATGGCCCCGTCGTCGCGCTCCGGGCGGACATGGACGCGCTCCCCGTGCAGGA 480
consensus_9598#1      CGGCGGCGATGGCCCCGTCGTCGCGCTCCGGGCGGACATGGACGCGCTCCCCGTGCAAGA 214
                      ********************************************************* **

consensus_9598#0      ATTGGTAGATTGGGAACACAAGAGCCAGGAAAACGGGAAAATGCATGCTTGCGGCCATGA 540
consensus_9598#1      ATTGGTAGATTGGGAACACAATAGCCAGGAAAACGGGAAAATGCATGCTTGCGGCCATGA 274
                      ********************* **************************************

consensus_9598#0      TGCTCACACTGCAATGCTTCTGGGAGCAGCCAAGCTACTTCAGAAACGCAAGAACGAACT 600
consensus_9598#1      TGCTCACACTGCAATGCTTCTGGGAGCAGCCAAGCTACTTCAGAAACGCAAGAACGAACT 334
                      ************************************************************

consensus_9598#0      CAAGGGCACTGTAAAGCTGGTGTTCCAGCCAGCAGAGGAGGGGAGCGCAGGTGCCTACTA 660
consensus_9598#1      CAAGGGCACTGTAAAGCTGGTGTTCCAGCCAGCAGAGGAGGGGAGCGCAGGTGCCTACTA 394
                      ************************************************************

consensus_9598#0      TGTTCTTCAGGAAGGCGTCCTCGACGACGTGTCGGCGATGTTTGGGATGCACGTCGATCC 720
consensus_9598#1      TGTTCTTCAGGAAGGCGTCCTCGACGACGTGTCGGCGATGTTTGGGATGCACGTCGATCC 454
                      ************************************************************

consensus_9598#0      GGCTCTTCCGGTGGGCGTGGTTGCAGCCAGGCCTGGGCCATTCGCCGCAACGTCAGGCAG 780
consensus_9598#1      GGCTCTTCCGGTGGGCGTGGTTGCAGCCAG------------------------------ 484
                      ******************************                              

consensus_9598#0      GTTCTTGGCAACTATCACTGGAAAGGGTGGCCATGCTGCATCCCCCATGACGCCATTGAT 840
consensus_9598#1      ------------------------------------------------------------
                                                                                  

consensus_9598#0      CCTGTTGTCGCTGCATCCAATGCCATC 867
consensus_9598#1      ---------------------------