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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9603#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1341 fasta sequence
[CCCCACCTCAAAATGGAACCCTAATCCATAGGTTCTCGATTGGAGTTTGAGATGATATTGTCAATGCCAAAGAAGAAGAGGAGGTCGTCGAAGTTGGAGGAGAATCACCGTGTGAATTATGAAGCATATCTGATGGCTTAAAATCTAGCCTATTTAGGATATATTTTTTGTCGACAGAAGTGCAAGCAATTGCTCGTCCATGAGAGCAAAACGACGTCCCAACTCCCCCCCGATCCACCTGCCCCACTGCAGGCTGCAGCTCACACCCAAACGCCTCACGCCCCGCCGCCATGCGCATCTTCGTGCTCTCCGGCCAGAGCAACATGGCCGGCCGCGGCGGCGTCCACCACCGGCGCTGGGACGGCGTCGTGCCGCCGGAGTGCGCGCCGTGCCCCTCCGTCCTCCGCCTTACCGCCGGGCTCGACTGGGTGGAGGCGCGGGAGCCGCTCCACGCCGACATCGACACGGCCAAGACCTGCGGCGTCGGCCCCGGGATGGCCTTCGCCCGCGCCGTCCTCCCGCGCCTGGACCCGCCCGGCTCCGGCGTCGGCCTCGTCCCCTGCGCCGTCGGCGGCACCGCCATCCGGGAGTGGGCCCGCGGGGAGCGCCTCTACGACCAGATGGTGCGCCGCGCGCGCGCCGCGGCGGAGTGCGGGGAGATCGAGGCCGTGCAGTGGTACCAGGGGGAGAGCGACGCCGAGTCCGACGCCGCCACGGCCGCGTACGCCGGGAACCTGGAGACGCTCATCGCCAATGTCAGGGAGGATCTTGGGATGCCTCAACTGCCATTCATCCAGGTTGCTCTTGCATCTGGGAATAAAAAGAACATTGAAAAAGTGAGGAAAGCTCAGCTTGGTATCAACCTGCCCAATGTTGTAACTGTGGACGCATTTGGACTGTCATTAAATGAAGATCATCTGCATCTTACCACTGAATCACAAGTAAAGCTTGGTGAAATGCTCGCACAAGTCTACATGAGCAATTTTTTGCCAGCAACATGCTAGGAGGAGTCCTGTCAGGTGAAATAATCTGTTTAACTCTGGAAGTTTGGCACCTAAATATCTTTCTCTTTAAACTGTTATTATAATTCTTCATTTTCTCGTTGGTTGAAACTATCTAGAGGTGAACCAACCAATTCATCTTGCATTTCTTGCACAGTAGCATTGATCCTTTCATTTAGCAGGACATCAACTTACTGGTCAATTATGTGTTGTATCTAAATTTAACAATTCGAGAGCAAAAC------ATCACCCAAGAGGAAGTAATTTTCTCCTTTTCAACATAAGTTGGCCATGTAAGATAGAATTCAACTCCAGTGCCTTTTGTGTTCCTCCAATATATAAG]
[+] EMBL AU172641 [CCCCACCTCAAAATGGAACCCTAATCCATAGGTTCTCGATTGGAGTTTGAGATGATATTGTCAATGCCAAAGAAGAAGAGGAGGTCGTCGAAGTTGGAGGAGAATCACCGTGTGAATTATGAAGCATATCTGATGGCTTAAAATCTAGCCTATTTAGGATATATTTTTTGTCGACAGAAGTGCAAGCAATTGCTCGTCCATGAGAGCAAAACGACGTCCCAACTCCCCCCCGATCCACCTGCCCCACTGCAGGCTGCAGCTCACACCCAAACGCCTCACGCCCCGCCGCCATGCGCATCTTCGTGCTCTCCGGCCAGAGCAACATGGCCGGCCGCGGCGGCGTCCACCACCGGCGCTGGGACGGCGTCGTGCCGCCGGAGTGCGCGCCGTGCCCCTCCGTCCTCCGCCTTACCGCCGGG ]
[+] EMBL AK068009 [ GCAGGCTGCAGCTCACACCCAAACGCCTCACGCCCCGCCGCCATGCGCATCTTCGTGCTCTCCGGCCAGAGCAACATGGCCGGCCGCGGCGGCGTCCACCACCGGCGCTGGGACGGCGTCGTGCCGCCGGAGTGCGCGCCGTGCCCCTCCGTCCTCCGCCTCACCGCCGCGCTCGACTGGGTGGAGGCGCGGGAGCCGCTCCACGCCGACATCGACACGGCCAAGACCTGCGGCGTCGGCCCCGGGATGGCCTTCGCCCGCGCCGTCCTCCCGCGCCTGGACCCGCCCGGCTCCGGCGTCGGCCTCGTCCCCTGCGCCGTCGGCGGCACCGCCATCCGGGAGTGGGCCCGCGGGGAGCGCCTCTACGACCAGATGGTGCGCCGCGCGCGCGCCGCGGCGGAGTGCGGGGAGATCGAGGCCGTGCAGTGGTACCAGGGGGAGAGCGACGCCGAGTCCGACGCCGCCACGGCCGCGTACGCCGGGAACCTGGAGACGCTCATCGCCAATGTCAGGGAGGATCTTGGGATGCCTCAACTGCCATTCATCCAGGTTGCTCTTGCATCTGGGAATAAAAAGAACATTGAAAAAGTGAGGAAAGCTCAGCTTGGTATCAACCTGCCCAATGTTGTAACTGTGGACGCATTTGGACTGTCATTAAATGAAGATCATCTGCATCTTACCACTGAATCACAAGTAAAGCTTGGTGAAATGCTCGCACAAGTCTACATGAGCAATTTTTTGCCAGCAACATGCTAGGAGGAGTCCTGTCAGGTGAAATAATCTGTTTAACTCTGGAAGTTTGGCACCTAAATATCTTTCTCTTTAAACTGTTATTATAATTCTTCATTTTCTCGTTGGTTGAAACTATCTAGAGGTGAACCAACCAATTCATCTTGCATTTCTTGCACAGTAGCATTGATCCTTTCATTTAGCAGGACATCAACTTACTGGTCAATTATGTGTTGTATCTAAATTTAACAATTCGAGAGCAAAAC ATCACCCAAGAGGAAGTAATTTTCTCCTTTTCAACATAAGTTGGCCATGTAAGATAGAATTCAACTCCAGTGCCTTTTGTGTTCCTCCAATATATAAG]
[+] EMBL CA764480 [ CGCCGAGTCCGACGCCGCCACGGCCGCGTACGCCGGGAACCTGGAGACGCTCATCGCCAATGTCAGGGAGGATCTTGGGATGCCTCAACTGCCATTCATCCAGGTTGCTCTTGCATCTGGGAATAAAAAGAACATTGAAAAAGTGAGGAAAGCTCAGCTTGGTATCAACCTGCCCAATGTTGTTACTGTGGACGCATTTGGACTGTCATTAAATGAAGATCATCTGCATCTTACCACTGAATCACAAGTAAAGCTTGGTGAAATGCTCGCACAAGTCTACATGAGCAATTTTTTGCCAGCAACATGCTAGGAGGAGTCCTGTCAGGTGAAATAATCTGTTTAACTCTGGAAGTTTGGCACCTAAATATCTTTCTCTTTAAACTGTTATTATAATTCTTCATTTTCTCGTTGGTTGAAACTATCTAGAGGTGAACCAACCAATTCATCTTGCATTTCTTGCACAGTAGCATTGATCCTTTCATTTAGCAGGACATCAACTTACTGGTCAATTATGTGTTGTATCTAAATTTAACAATTCGAGAGCAAAACATCTTAATCACCCAAGAGGAAGTAATTTT ]
consensusID : consensus_9603#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence
[GACCCGGCCCGGNTTCCGGCGTCGGCCTTNGTCCCTTGCGCCGTCGGCGGGCACCGCCATCCGGAAGTGGGCCCGCGGGAAGCGCCTCTACGACCAGATGGTGCGCCGCGCGCGCGCCGCGNCGGAGTGCGGGGAGATCGAGGCCGTGCAGTGGTACCAGGGGGAGAGCGACGCCGAGTCCGACGCCGCCACGGCCGCGTACGCCGGGAACCTGGAGACGCTCATCGCCAATGTCAGGGAGGATCTTGGGATGCCTCAACTGCCATTCATCCAGGTTGCTCTTGCATCTGGGAATAAAAAGAACATTGAAAAAGTGAGGAAAGCTCAGCTTGGTATCAACCTGCCCAATGTTGTAACTGTGGACGCATTTGGACTGTCATTAAATGAAGATCATCTGCATCTTACCACTGAATCACAAGTAAAGCTTGGTGAAATGCTCGCACAAGTCTACATGAGCAATTTTTTGCCAGCAACATGCTAGGAGGAGTCCTGTCAGAATGCTAGCGTATCAGTGAAAACTCAAATTGATAGCAAGCCATCCAGCTGTTGTTACTGTTGTACAATAATGGAAAACCTCTCTTAGGTGTATCTCAGTGTAAATAACAAAAACTTACTACCATGAGCACTGTAATTGTGAGGTTGGAGATTGACATTGAATCGCGCTAGTTACGAGCCCTTAAAAAAAAAAAAAAA]
[+] EMBL AU164487 [GACCCGGCCCGGNTTCCGGCGTCGGCCTTNGTCCCTTGCGCCGTCGGCGGGCACCGCCATCCGGAAGTGGGCCCGCGGGAAGCGCCTCTACGACCAGATGGTGCGCCGCGCGCGCGCCGCGNCGGAGTGCGGGGAGATCGAGGCCGTGCAGTGGTACCAGGGGGAGAGCGACGCCGAGTCCGACGCCGCCACGGCCGCGTACGCCGGGAACCTGGAGACGCTCATCGCCAATGTCAGGGAGGATCTTGGGATGCCTCAACTGCCATTCATCCAGGTTGCTCTTGCATCTGGGAATAAAAAGAACATTGAAAAAGTGAGGAAAGCTCAGCTTGGTATCAACCTGCCCAATGTTGTAACTGTGGACGCATTTGGACTGTCATTAAATGAAGATCATCTGCATCTTACCACTGAATCACAAGTAAAGCTTGGTGAAATGCTCGCACAAGTCTACATGAGCAATTTTTTGCCAGCAACATGCTAGGAGGAGTCCTGTCAGAATGCTAGCGTATCAGTGAAAACTCAAATTGATAGCAAGCCATCCAGCTGTTGTTACTGTTGTACAATAATGGAAAACCTCTCTTAGGTGTATCTCAGTGTAAATAACAAAAACTTACTACCATGAGCACTGTAATTGTGAGGTTGGAGATTGACATTGAATCGCGCTAGTTACGAGCCCTTAAAAAAAAAAAAAAA]
consensusID : consensus_9603#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 353 fasta sequence
[GCCCATGTGTACTGGGACGCATTGGACTGTCATTAATGAAGATCATCTGCATCTTACCCTGGAATCACAGTAAAGCTGGTGAAATGCTCGCACAAGTCTACATGACATTTTTTCCAGCACATGCTAGGAGGAGTCCTGTCAGGTGAAATAATCTGTTTAACTCTGGAATTTGGCACCTAAAATCTTCTCTTAAACTGTTATTATAATTATCATTTTCTCTTGTTGAAACTATCTAGAGTGAACCACCAATTCATCTCCATTTCTTGCACATACCATTGATCCTTTCATTTACAGGACATCAATTTACTGTCAATTATTTTGTATCTAAATTTAACAATTCGAGACCAAACATC]
[+] EMBL BI797098 [GCCCATGTGTACTGGGACGCATTGGACTGTCATTAATGAAGATCATCTGCATCTTACCCTGGAATCACAGTAAAGCTGGTGAAATGCTCGCACAAGTCTACATGACATTTTTTCCAGCACATGCTAGGAGGAGTCCTGTCAGGTGAAATAATCTGTTTAACTCTGGAATTTGGCACCTAAAATCTTCTCTTAAACTGTTATTATAATTATCATTTTCTCTTGTTGAAACTATCTAGAGTGAACCACCAATTCATCTCCATTTCTTGCACATACCATTGATCCTTTCATTTACAGGACATCAATTTACTGTCAATTATTTTGTATCTAAATTTAACAATTCGAGACCAAACATC]
consensusID : consensus_9603#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 320 fasta sequence
[CGGCGGCGTCCACCACCGGCGCTTCCTCCGCCTCACCGCCGCGCTCGACTGGGTGGAGGCGCGGGAGCGCTCCACGCCGACATCGACACGGCCAAGACCTGCGGCGTCGGCCCCGGGATGGCCTTCGCCCGCGCCGTCCTCCCGCGCCTGGACCCGCCCGGNTCCGGCGTCGGCCTCGTCCCCTGCGCCGTCGGGGCACCGCATCCGGNAGTNGGCCCGCGGGGAGCGCCTTTACGACCAGATGGTGNGNCGCGCGGCNCCGCGGCGGAAGTTGCGGGGAGATCGAGGCCGTTCAGTNGTACCAGGGGGGAGAGCAANCG]
[+] EMBL OSR00451A [CGGCGGCGTCCACCACCGGCGCTTCCTCCGCCTCACCGCCGCGCTCGACTGGGTGGAGGCGCGGGAGCGCTCCACGCCGACATCGACACGGCCAAGACCTGCGGCGTCGGCCCCGGGATGGCCTTCGCCCGCGCCGTCCTCCCGCGCCTGGACCCGCCCGGNTCCGGCGTCGGCCTCGTCCCCTGCGCCGTCGGGGCACCGCATCCGGNAGTNGGCCCGCGGGGAGCGCCTTTACGACCAGATGGTGNGNCGCGCGGCNCCGCGGCGGAAGTTGCGGGGAGATCGAGGCCGTTCAGTNGTACCAGGGGGGAGAGCAANCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9603#1 ------------------------------------------------------------
consensus_9603#3 ------------------------------------------------------------
consensus_9603#0 CCCCACCTCAAAATGGAACCCTAATCCATAGGTTCTCGATTGGAGTTTGAGATGATATTG 60
consensus_9603#2 ------------------------------------------------------------
consensus_9603#1 ------------------------------------------------------------
consensus_9603#3 ------------------------------------------------------------
consensus_9603#0 TCAATGCCAAAGAAGAAGAGGAGGTCGTCGAAGTTGGAGGAGAATCACCGTGTGAATTAT 120
consensus_9603#2 ------------------------------------------------------------
consensus_9603#1 ------------------------------------------------------------
consensus_9603#3 ------------------------------------------------------------
consensus_9603#0 GAAGCATATCTGATGGCTTAAAATCTAGCCTATTTAGGATATATTTTTTGTCGACAGAAG 180
consensus_9603#2 ------------------------------------------------------------
consensus_9603#1 ------------------------------------------------------------
consensus_9603#3 ------------------------------------------------------------
consensus_9603#0 TGCAAGCAATTGCTCGTCCATGAGAGCAAAACGACGTCCCAACTCCCCCCCGATCCACCT 240
consensus_9603#2 ------------------------------------------------------------
consensus_9603#1 ------------------------------------------------------------
consensus_9603#3 ------------------------------------------------------------
consensus_9603#0 GCCCCACTGCAGGCTGCAGCTCACACCCAAACGCCTCACGCCCCGCCGCCATGCGCATCT 300
consensus_9603#2 ------------------------------------------------------------
consensus_9603#1 ------------------------------------------------------------
consensus_9603#3 ------------------------------------------------------------
consensus_9603#0 TCGTGCTCTCCGGCCAGAGCAACATGGCCGGCCGCGGCGGCGTCCACCACCGGCGCTGGG 360
consensus_9603#2 ------------------------------------------------------------
consensus_9603#1 ------------------------------------------------------------
consensus_9603#3 ------------------------------------------------------------
consensus_9603#0 ACGGCGTCGTGCCGCCGGAGTGCGCGCCGTGCCCCTCCGTCCTCCGCCTTACCGCCGGGC 420
consensus_9603#2 ------------------------------------------------------------
consensus_9603#1 ------------------------------------------------------------
consensus_9603#3 ------------------------------------------------------------
consensus_9603#0 TCGACTGGGTGGAGGCGCGGGAGCCGCTCCACGCCGACATCGACACGGCCAAGACCTGCG 480
consensus_9603#2 ------------------------------------------------------------
consensus_9603#1 ----------------------------------------------GACCCGGCCCGGNT 14
consensus_9603#3 --------------------------------------------------CGGC--GGCG 8
consensus_9603#0 GCGTCGGCCCCGGGATGGCCTTCGCCCGCGCCGTCCTCCCGCGCCTGGACCCGCCCGGC- 539
consensus_9603#2 ------------------------------------------------GCCCATGTGTAC 12
* *
consensus_9603#1 TCCGGCGTCGGCCTTNGTCCCTTGCGCCGTCGGCGGGCACCGCCATCCGGAAGTGGGCCC 74
consensus_9603#3 TCCACCACCGGCGCTT--CCTCCGCCTCACCGCCGCGCTCGACTGGGTGGAGG------C 60
consensus_9603#0 TCCGGCGTCGGC-CTCGTCCCCTGCGCCGTCGGCG-GCACCGCCATCCGGGAGTGGGCCC 597
consensus_9603#2 TGGGACGCATTGGACTGTCATTAATGAAGATCATCTGCATCTTACCCTGGAAT----CAC 68
* * * ** ** *
consensus_9603#1 GCGGGAAGCGCCTCTACGACCAGAT-GGTGCGCCGCGCGCGCGCCGCGNCGGAGTGCGGG 133
consensus_9603#3 GCGGGA-GCGC-TCCACGCCGACATCGACACGGCCAAGACCTGCGGCGTCGGCCCCGGGA 118
consensus_9603#0 GCGGGGAGCGCCTCTACGACCAGAT-GGTGCGCCGCGCGCGCGCCGCGGCGGAGTGCGGG 656
consensus_9603#2 AGTAAAGCTGGTGAAATGCTCGCACAAGTCTACATGACATTTTTTCCAGCACATGCTAGG 128
* * * * * * *
consensus_9603#1 GAGATCGAGGCCGTGCAGTGGTACCAGGGGGAGAGCGACGCCGAGTCCGACGCC-GCCAC 192
consensus_9603#3 TGGCCTTCGCCCGCGCCGTCCTCCCGCGCCTGGACCCGC-CCGGNTCCGGCGTC-GGCCT 176
consensus_9603#0 GAGATCGAGGCCGTGCAGTGGTACCAGGGGGAGAGCGACGCCGAGTCCGACGCC-GCCAC 715
consensus_9603#2 AGGAGTCCTGTCAGGT-GAAATAATCTGTTTAACTCTG----GAATTTGGCACCTAAAAT 183
* * * * * * * * * * * *
consensus_9603#1 GGCCGCGTACGCCG-------GGAACCTGGAGACGCTCATCGCCAATGTCAGGGAGGATC 245
consensus_9603#3 CGTCCCCTGCGCCGTCG----GGGCACCGCATCCGGNAGTNGGC--CCGCGGGGAGCGCC 230
consensus_9603#0 GGCCGCGTACGCCG-------GGAACCTGGAGACGCTCATCGCCAATGTCAGGGAGGATC 768
consensus_9603#2 CTTCTCTTAAACTGTTATTATAATTATCATTTTCTCTTGTTGAAACTATCTAGAGTGAAC 243
* * * * * * * * * * *
consensus_9603#1 TTGGGATGCCTCAACTGCCATTCATCCAGGTTGCTCTTGCATCTGGGAATAAAAAGAACA 305
consensus_9603#3 TTT--ACGACCAGATGGTGNGNCGCGCGG-----CNCCGCGGC-GGAAGTTGCGGGGAGA 282
consensus_9603#0 TTGGGATGCCTCAACTGCCATTCATCCAGGTTGCTCTTGCATCTGGGAATAAAAAGAACA 828
consensus_9603#2 CAC---CAATTCATCTCCATTTCTTGCACAT-ACCATTGATCCTTTCATTTACAGG-ACA 298
* * * * * * * * *
consensus_9603#1 TTGAAAAAGTG-AGGAAAGCTCAGCTTGGTATCAACCTGCCCAATGTTGTAACTGTGGAC 364
consensus_9603#3 TCGAGGCCGTTCAGTNGTACCAGGGGGGAGAGCAANCG---------------------- 320
consensus_9603#0 TTGAAAAAGTG-AGGAAAGCTCAGCTTGGTATCAACCTGCCCAATGTTGTAACTGTGGAC 887
consensus_9603#2 TCAATTTACTGTCAATTATTTTGTATCTAAATTTAACAATTCGAGACCAAACATC----- 353
* * * * * *
consensus_9603#1 GCATTTGGACTGTCATTAAATGAAGATCATCTGCATCTTACCACTGAATCACAAGTAAAG 424
consensus_9603#3 ------------------------------------------------------------
consensus_9603#0 GCATTTGGACTGTCATTAAATGAAGATCATCTGCATCTTACCACTGAATCACAAGTAAAG 947
consensus_9603#2 ------------------------------------------------------------
consensus_9603#1 CTTGGTGAAATGCTCGCACAAGTCTACATGAGCAATTTTTTGCCAGCAACATGCTAGGAG 484
consensus_9603#3 ------------------------------------------------------------
consensus_9603#0 CTTGGTGAAATGCTCGCACAAGTCTACATGAGCAATTTTTTGCCAGCAACATGCTAGGAG 1007
consensus_9603#2 ------------------------------------------------------------
consensus_9603#1 GAGTCCTGTCAGAATGCTAGCGTATCAGTGAAAACTCAAATTGATAGCAAGCCATCCAGC 544
consensus_9603#3 ------------------------------------------------------------
consensus_9603#0 GAGTCCTGTCAGGTGAAATAATCTGTTTAACTCTGGAAGTTTGGCACCTAAATATCTTTC 1067
consensus_9603#2 ------------------------------------------------------------
consensus_9603#1 TGTTGTTACTGTTGTACAATAATGGAAAACCTCTCTTAGGTGTATCTCAGTGTAAATAAC 604
consensus_9603#3 ------------------------------------------------------------
consensus_9603#0 TCTTTAAACTGTTATTATAATTCTTCATTTTCTCGTTGGTTGAAACTATCTAGAGGTGAA 1127
consensus_9603#2 ------------------------------------------------------------
consensus_9603#1 AAAAACTTACTACCATGAGCACTGTAATTGTGAGGTTGGAGATTGACATTGAATCGCGCT 664
consensus_9603#3 ------------------------------------------------------------
consensus_9603#0 CCAACCAATTCATCTTGCATTTCTTGCACAGTAGCATTGATCCTTTCATTTAGCAGGACA 1187
consensus_9603#2 ------------------------------------------------------------
consensus_9603#1 AGTTACGAGCCCTTAAAAAAAAAAAAAAA------------------------------- 693
consensus_9603#3 ------------------------------------------------------------
consensus_9603#0 TCAACTTACTGGTCAATTATGTGTTGTATCTAAATTTAACAATTCGAGAGCAAAACATCA 1247
consensus_9603#2 ------------------------------------------------------------
consensus_9603#1 ------------------------------------------------------------
consensus_9603#3 ------------------------------------------------------------
consensus_9603#0 CCCAAGAGGAAGTAATTTTCTCCTTTTCAACATAAGTTGGCCATGTAAGATAGAATTCAA 1307
consensus_9603#2 ------------------------------------------------------------
consensus_9603#1 ----------------------------------
consensus_9603#3 ----------------------------------
consensus_9603#0 CTCCAGTGCCTTTTGTGTTCCTCCAATATATAAG 1341
consensus_9603#2 ----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||