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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9604#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1434 fasta sequence
[ATTTTCGATAATAATATTTTGGATTTCACACCATCACATGCTTGGTAGTAAAAAATATACAAGATTTAGGCAGAGCAAGTCAATGAT-CTGGGATATACATATAAATGGATGTTTCAGTTCTTAGGACATCATAGCACGGAGTATTGTTGACAAGCACATTAATTCTTGAGACAAGATCTCCTCTCGTTGATGCTCATTAGTAGCAGGCAATCAGTTCCAGCAGCTGTAACCCTCCCCCTCGTTCTCGTGGTTGTGATGATGGCGAGTTTCCGCTGCTGGAGTGAAGGTGAGAGCAACCTTGATCTCTCCACAGTACTTCTCCTCCTTGACGACACGGTGGACGGCTGGAGGAAGGCTGCCTTCCAGGAACACAGGCTCCAGAGGAATGCTGAAATTTTGCACAGGTGAGCAAGAACCATACATGCATAGACTGACAAATATCACTCTGAAGAGATGTTCAGAGAAAGGTGTTCTTCTGAACTTTCTTCAGAAGCTCATGTTGTCTCATGGAAGAAGGGATTCTACTCTCAAGATGGATAAACATGTTTGAGTTCAGAAGCTGCATTTCAGCTGTGCACTGCTAAAATGGAAGAATGCAGAGTGTCACCCATAATTTAGATGCTTACTTTGCTTCACCGACGAAATCGTCAGCTGAGAAGGCATCACTGTCCATGATCTTGACATTGAGCTGTGGAACATCGTCGGAGACGGTGAAGACGAAGGTCTCGTTCCATTCAGGCTCGCTTCCTGCTCCTTTTGCAACGCTGCTTTTCTGCTCCTGAGTGCGGCAGGTGAGGATCACGTANGGGTCCATGTCGTCTGATTTGGCAAAAATACACACAAATTGGCATCAAATGAAGAGCGTAAAAAACAGTGATTCTCAGAATAAGTTTGAGAAGATTGTGATTGAGTATGTCTAGCCCCTACGTACACATGCTTTCTCACTCTAACGCTATGATGTTTTTAACTTTTTACTCGAGTAGGAGTGTAGGACAGGACAGCACAAGCAAAACTCCACGATATACTGGCGTGCTTTTATCCATCCTTCGTCGTTTTCGCATGCAGATACATATTTTTTTTTAGGTTTGCTTTAGAGTAATGAAGTGAAATAAAACAATTGTTAGGCATTAACAACAGGACATCAAGCACTATAAGTCACCGTTGACCCATGATCTAGCTAGAACAACATGCTGATAATTGCTTAACCAACCGCGAAATGCCCCTCCTCGATCACTCTGTCTAGTATCCTCACTGGTAATGAATCATGATATCTATTGATGCCTTGTTCATGCATCTAATCTGTCAGGTTCACAATCCTAAAGAAACGATTAAGCAGTCAACCAGCAAAGAAGAGAAGAAATGGCGTAATCAAAAACAAAAGCTTTGCAAACACAGCAAGAAGAGGTAGAAGGATGTGTGTTTACTCAAGGAGTC]
[-] EMBL AU165055 [ATTTTCGATAATAATATTTTGGATTTCACACCATCACATGCTTGGTAGTAAAAAATATACAAGATTTAGGCAGAGCAAGTCAATGATCCTGGGATATACATATAAATGGATGTTTCAGTTCTTAGGACATCATAGCACGGAGTATTGTTGACAAGCACATTAATTCTTGAGACAAGATCTCCTCTCGTTGATGCTCATTAGTAGCAGGCAATCAGTTCCAGCAGCTGTAACCCTCCCCCTC ]
[+] EMBL CB665412 [ AATGGT CTGGGATATACATATAAATGGATGTTTCAGTTCTTAGGACATCATAGCACGGAGTATTGTTGACAAGCACATTAATTCTTGAGACAAGATCTCCTCTCGTTGATGCTCATTAGTAGCAGGCAATCAGTTCCAGCTGCTGTAACCCTCCCCCTCGTTCTCGTGGTTGTGATGATGGCGAGTTTCCGCTGCTGGAGTGAAGGTGAGAGCAACCTTGATCTCTCCACAGTACTTCTCCTCCTTGACGACACGGTGGACGGCTGGAGGAAGGCTGCCTTCCAGGAACACAGGCTCCAGAGGAATGCTGAAATTTTGCACAGGTGAGCAAGAACCATACATGCATAGACTGACAAATATCACTCTGAAGAGATGTTCAGAGAAAGGTGTTCTTCTGAACTTTCTTCAGAAGCTCATGTTGTCTCATGGAAGAAGGGATTCTACTCTCAAGATGGATAAACATGTTTGAGTTCAGAAGCTGCATTTCAGCTGTGCACTGCTAAAATGGAAGAATGCAGAGTGTCACCCATAATTTAGATGCTTACTTTGCTTCACCGACGAAATCGTCAGCTGAGAAGGCATCACTGTCCATGATCTTGACATTGAGCTGTGGAACATCGTCGGAGACGGTGAAGACGAAGGTCTCGTTCCATTCAGGCTCGCTTCCTGCTCCTTTTGCAACGCTGCTTTTCTGCTCCTGAGTGCGGCAGGTGAGGATCACGTANGGGTCCATGTCGTCTGATTTGGCAAAAATACACACAAATTGGCATCAAATGAAGAGCGTAAAAAACAGTGATTCTCAGAATAAGTTTGAGAAGATTGTGATTGAGTATGTCTAGCCCCTACGTACACATGCTTTCTCACTCTA ]
[-] EMBL CB665413 [ GAGTGTCACCCATATTTTAGATGCTTACTTTGCTTCACCGACGAAATCGTCAGCTGAGAAGGCATCACTGTCCATGATCTTGACATTGAGCTGTGGAACATCGTCGGAGACGGTGAAGACGAAGGTCTCGTTCCATTCAGGCTCGCTTCCTGCTCCTTTTGCAACGCTGCTTTTCTGCTCCTGAGTGCGGCAGGTGAGGATCACGTAGGGGTCCATGTCGTCTGATTTGGCAAAAATACACACAAATTGGCATCAAATGAAGAGCGTAAAAAACAGTGATTCTCAGATAAAGTTTGAGAAGATTGTGATTGAGTATGTCTAGCCCCTACGTACACATGCTTTCTCACTCTAACGCTATGATGTTTTTAACTTTTTACTCGAGTAGGAGTGTAGGACAGGACAGCACAAGCAAAACTCCACGATATACTGGCGTGCTTTTATCCATCCTTCGTCGTTTTCGCATGCAGATACATATTTTTTTTTAGGTTTGCTTTAGAGTAATGAAGTGAAATAAAACAATTGTTAGGCATTAACAACAGGACATCAAGCACTATAAGTCACCGTTGACCCATGATCTAGCTAGAACAACATGCTGATAATTGCTTAACCAACCGCGAAATGCCCCTCCTCGATCACTCTGTCTAGTATCCTCACTGGTAATGAATCATGATATCTATTGATGCCTTGTTCATGCATCTAATCTGTCAGGTTCACAATCCTAAAGAAACGATTAAGCAGTCAACCAGCAAAGAAGAGAAGAAATGGCGTAATCAAAAACAAAAGCTTTGCAAACACAGCAAGAAGAGGTAGAAGGATGTGTGTTTACTCAAGGAGTC]
consensusID : consensus_9604#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 692 fasta sequence
[GCATGATTCGATAAAAATATTCTGGATTTCACACCATCACATCTTTGTAGTAAAAAATATACAAAATTTAGGCAGAGCAAGTCAATGGTCTGGGATATACATATAAATGGATGTTTCAGTTCTTAGGACATCATAGCACGGAGTATTGTTGACAAGCACATTAATTCTTGAGACAAGATCTCCTCTCGTTGATGCTCATTAGTAGCAGGCAATCAGTTCCAGCTGCTGTAACCCTCCCCCTCGTTCTCGTGGTTGTGATGATGGCGAGTTTCCGCTGCTGGAGTGAAGGTGAGAGCAACCTTGATCTCTCCACAGTACTTCTCCTCCTTGACGACACGGTGGACGGCTGGAGGAAGGCTGCCTTCCAGGAACACAGGCTCCAGAGGAATGTTTGCTTCACCGACGAAATCGTCAGCTGAGAAGGCATCACTGTCCATGATCTTGACATTGAGCTGTGGAACATCGTCGGAGACGGTGAAGACGAAGGTCTCGTTCCATTCAGGCTCGCTTCCTGCTCCTTTTGCAACGCTGCTTTTCTGCTCCTGAGTGCGGCAGGTGAGGATCACGTAGGGGTCCATGTCGTTCAAGAAGTCAGTGTCCTCGAGGCCCTTGGCGCAGACGAGGAGGACCTCCAGCTTCCCGTGCACCATCTCTCCTCTTCTCTTCGATCGATCTCTCGCTAGTCTCTAGTC]
[-] EMBL AK070539 [GCATGATTCGATAAAAATATTCTGGATTTCACACCATCACATCTTTGTAGTAAAAAATATACAAAATTTAGGCAGAGCAAGTCAATGGTCTGGGATATACATATAAATGGATGTTTCAGTTCTTAGGACATCATAGCACGGAGTATTGTTGACAAGCACATTAATTCTTGAGACAAGATCTCCTCTCGTTGATGCTCATTAGTAGCAGGCAATCAGTTCCAGCTGCTGTAACCCTCCCCCTCGTTCTCGTGGTTGTGATGATGGCGAGTTTCCGCTGCTGGAGTGAAGGTGAGAGCAACCTTGATCTCTCCACAGTACTTCTCCTCCTTGACGACACGGTGGACGGCTGGAGGAAGGCTGCCTTCCAGGAACACAGGCTCCAGAGGAATGTTTGCTTCACCGACGAAATCGTCAGCTGAGAAGGCATCACTGTCCATGATCTTGACATTGAGCTGTGGAACATCGTCGGAGACGGTGAAGACGAAGGTCTCGTTCCATTCAGGCTCGCTTCCTGCTCCTTTTGCAACGCTGCTTTTCTGCTCCTGAGTGCGGCAGGTGAGGATCACGTAGGGGTCCATGTCGTTCAAGAAGTCAGTGTCCTCGAGGCCCTTGGCGCAGACGAGGAGGACCTCCAGCTTCCCGTGCACCATCTCTCCTCTTCTCTTCGATCGATCTCTCGC ]
[+] EMBL CB967281 [ AAAAATATACAAAATTTAGGCAGAGCAAGTCAATGGTCTGGGATATACATATAAATGGATGTTTCAGTTCTTAGGACATCATAGCACGGAGTA TGTTGACAAGCACATTAATTCTTGAGACAAGATCTCCTCTCGTTGATGCTCATTAGTAGCAGGCAATCAGTTCCAGCTGCTGTAACCCTCCCCCTCGTTCTCGTGGTTGTGATGATGGCGAGTTTCCGCTGCTGGAGTGAAGGTGAGAGCAACCTTGATCTCTCCACAGTACTTCTCCTCCTTGACGACACGGTGGACGGCTGGAGGAAGGCTGCCTTCCAGGAACACAGGCTCCAGAGGAATGTTTGCTTCACCGACGAAATCGTCAGCTGAGAAGGCATCACTGTCCATGATCTTGACATTGAGCTGTGGAACATCGTCGGAGACGGTGAAGACGAAAGTCTCGTTCCATTCAGGCTCGCTTCCTGCTCCTTTTGCAACGCTGCTTTTCTGCTCCTGAGTGCGGCAGGTGAGGATCACGTAGGGGTCCATGTCGTTCAAGAAGTCAGTGTCCTCGAGGCCCTTGGCGCAGACGAGGAGGACCTCCAGCTTCCCGTGCACCATCTCTCCTCTTCTCTTCGATCGATCTCTCGCTAGTCTCTAGTC]
consensusID : consensus_9604#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence
[TAAATACTCACTAGAATAGCTGCGGCGTAAATATACAAAATAGGCAGCAGTAGGTCGGGATATACATATAATGGATGTCAGTTCAGGACATCATAGCACGGAGTATGTGACAAGCACATTAATTCTGAGACAAGATCTCCTCTCTGATGCTCATTAGTAGCAGGCAATCAGTTCCAGCTGCTGTAACCCTCCCCCTCGTTCTCGTGGTTGTGATGATGGCGAGTTCCGCTGCTGGAGTGAAGGTGAGAGCAACCTTGATCTCTCCACAGTACTTCTCCTCCTGACGACACGGTGGACGGCTGGAGGAAGGCTGCCTTCCAGGAACACAGGCTCCAGAGGAATGTTTGCTTCACCGACGAAATCGTCAGCTGAGAAGGCATCACTGTCCATGATCTTGACATTGAGCTGTGGAACATCGTCGGAGACGGTGAAGACGAAAGTCTCGTTCCATTCAGGCTCGCTTCCTGCTCCTTTTGCAACGCTGCTTTTCTGCTCCTGAGTGCGGCAGGTGAGGATCACGTAGGGGTCCATGTCGTTCAAGAAGTCAGTGTCTCGAGGCCCTTGGCGCAGACGAGGAGGACTCCAGCTCGCGGGCAGCATCTCTCCTCTTCTCTTCGATCGATCTCTCGTAGTCTCTAGTTTCTGCCGCTACGGCGAATCTGG]
[+] EMBL CB965542 [TAAATACTCACTAGAATAGCTGCGGCGTAAATATACAAAATAGGCAGCAGTAGGTCGGGATATACATATAATGGATGTCAGTTCAGGACATCATAGCACGGAGTATGTGACAAGCACATTAATTCTGAGACAAGATCTCCTCTCTGATGCTCATTAGTAGCAGGCAATCAGTTCCAGCTGCTGTAACCCTCCCCCTCGTTCTCGTGGTTGTGATGATGGCGAGTTCCGCTGCTGGAGTGAAGGTGAGAGCAACCTTGATCTCTCCACAGTACTTCTCCTCCTGACGACACGGTGGACGGCTGGAGGAAGGCTGCCTTCCAGGAACACAGGCTCCAGAGGAATGTTTGCTTCACCGACGAAATCGTCAGCTGAGAAGGCATCACTGTCCATGATCTTGACATTGAGCTGTGGAACATCGTCGGAGACGGTGAAGACGAAAGTCTCGTTCCATTCAGGCTCGCTTCCTGCTCCTTTTGCAACGCTGCTTTTCTGCTCCTGAGTGCGGCAGGTGAGGATCACGTAGGGGTCCATGTCGTTCAAGAAGTCAGTGTCTCGAGGCCCTTGGCGCAGACGAGGAGGACTCCAGCTCGCGGGCAGCATCTCTCCTCTTCTCTTCGATCGATCTCTCGTAGTCTCTAGTTTCTGCCGCTACGGCGAATCTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9604#1 GCATGATTCGATAAAAATATTCTGGATTTCACACCATCACA-TCTTTGTAGTAAAAAATA 59
consensus_9604#2 -----------------------TAAATACTCACTAGAATA-GCTGCGGCGTAAA---TA 33
consensus_9604#0 ---ATTTTCGATAATAATATTTTGGATTTCACACCATCACATGCTTGGTAGTAAAAAATA 57
* * * *** * * * ** * ***** **
consensus_9604#1 TACAAAATTTAGGCAGAGCAAGTCAATGGTCTGGGATATACATATAAATGGATGTTTCAG 119
consensus_9604#2 TACAAAAT--AGGCAG-------CAGTAGGTCGGGATATACATATAA-TGGATGT--CAG 81
consensus_9604#0 TACAAGATTTAGGCAGAGCAAGTCAATGATCTGGGATATACATATAAATGGATGTTTCAG 117
***** ** ****** ** * *************** ******* ***
consensus_9604#1 TTCTTAGGACATCATAGCACGGAGTATTGTTGACAAGCACATTAATTCTTGAGACAAGAT 179
consensus_9604#2 TTC--AGGACATCATAGCACGGAGTATG--TGACAAGCACATTAATTCT-GAGACAAGAT 136
consensus_9604#0 TTCTTAGGACATCATAGCACGGAGTATTGTTGACAAGCACATTAATTCTTGAGACAAGAT 177
*** ********************** ******************* **********
consensus_9604#1 CTCCTCTCGTTGATGCTCATTAGTAGCAGGCAATCAGTTCCAGCTGCTGTAACCCTCCCC 239
consensus_9604#2 CTCCTCTC--TGATGCTCATTAGTAGCAGGCAATCAGTTCCAGCTGCTGTAACCCTCCCC 194
consensus_9604#0 CTCCTCTCGTTGATGCTCATTAGTAGCAGGCAATCAGTTCCAGCAGCTGTAACCCTCCCC 237
******** ********************************** ***************
consensus_9604#1 CTCGTTCTCGTGGTTGTGATGATGGCGAGTTTCCGCTGCTGGAGTGAAGGTGAGAGCAAC 299
consensus_9604#2 CTCGTTCTCGTGGTTGTGATGATGGCGAGTT-CCGCTGCTGGAGTGAAGGTGAGAGCAAC 253
consensus_9604#0 CTCGTTCTCGTGGTTGTGATGATGGCGAGTTTCCGCTGCTGGAGTGAAGGTGAGAGCAAC 297
******************************* ****************************
consensus_9604#1 CTTGATCTCTCCACAGTACTTCTCCTCCTTGACGACACGGTGGACGGCTGGAGGAAGGCT 359
consensus_9604#2 CTTGATCTCTCCACAGTACTTCTCCTCCT-GACGACACGGTGGACGGCTGGAGGAAGGCT 312
consensus_9604#0 CTTGATCTCTCCACAGTACTTCTCCTCCTTGACGACACGGTGGACGGCTGGAGGAAGGCT 357
***************************** ******************************
consensus_9604#1 GCCTTCCAGGAACACAGGCTCCAGAGGAATG----------------------------- 390
consensus_9604#2 GCCTTCCAGGAACACAGGCTCCAGAGGAATG----------------------------- 343
consensus_9604#0 GCCTTCCAGGAACACAGGCTCCAGAGGAATGCTGAAATTTTGCACAGGTGAGCAAGAACC 417
*******************************
consensus_9604#1 ------------------------------------------------------------
consensus_9604#2 ------------------------------------------------------------
consensus_9604#0 ATACATGCATAGACTGACAAATATCACTCTGAAGAGATGTTCAGAGAAAGGTGTTCTTCT 477
consensus_9604#1 ------------------------------------------------------------
consensus_9604#2 ------------------------------------------------------------
consensus_9604#0 GAACTTTCTTCAGAAGCTCATGTTGTCTCATGGAAGAAGGGATTCTACTCTCAAGATGGA 537
consensus_9604#1 ------------------------------------------------------------
consensus_9604#2 ------------------------------------------------------------
consensus_9604#0 TAAACATGTTTGAGTTCAGAAGCTGCATTTCAGCTGTGCACTGCTAAAATGGAAGAATGC 597
consensus_9604#1 -----------------------------TTTGCTTCACCGACGAAATCGTCAGCTGAGA 421
consensus_9604#2 -----------------------------TTTGCTTCACCGACGAAATCGTCAGCTGAGA 374
consensus_9604#0 AGAGTGTCACCCATAATTTAGATGCTTACTTTGCTTCACCGACGAAATCGTCAGCTGAGA 657
*******************************
consensus_9604#1 AGGCATCACTGTCCATGATCTTGACATTGAGCTGTGGAACATCGTCGGAGACGGTGAAGA 481
consensus_9604#2 AGGCATCACTGTCCATGATCTTGACATTGAGCTGTGGAACATCGTCGGAGACGGTGAAGA 434
consensus_9604#0 AGGCATCACTGTCCATGATCTTGACATTGAGCTGTGGAACATCGTCGGAGACGGTGAAGA 717
************************************************************
consensus_9604#1 CGAAGGTCTCGTTCCATTCAGGCTCGCTTCCTGCTCCTTTTGCAACGCTGCTTTTCTGCT 541
consensus_9604#2 CGAAAGTCTCGTTCCATTCAGGCTCGCTTCCTGCTCCTTTTGCAACGCTGCTTTTCTGCT 494
consensus_9604#0 CGAAGGTCTCGTTCCATTCAGGCTCGCTTCCTGCTCCTTTTGCAACGCTGCTTTTCTGCT 777
**** *******************************************************
consensus_9604#1 CCTGAGTGCGGCAGGTGAGGATCACGTAGGGGTCCATGTCGTTCAAGAAGTCAGTGTCCT 601
consensus_9604#2 CCTGAGTGCGGCAGGTGAGGATCACGTAGGGGTCCATGTCGTTCAAGAAGTCAGTGTC-T 553
consensus_9604#0 CCTGAGTGCGGCAGGTGAGGATCACGTANGGGTCCATGTCGTCTGATTTGGCAAAAATAC 837
**************************** ************* * * **
consensus_9604#1 CGAGGCCCTTGGCGCAGACGAGGAG---GACCTCCAGCTTCCCGTGCACCATCTCTCCTC 658
consensus_9604#2 CGAGGCCCTTGGCGCAGACGAGGAG---GAC-TCCAGCT-CGCGGGCAGCATCTCTCCTC 608
consensus_9604#0 ACACAAATTGGCATCAAATGAAGAGCGTAAAAAACAGTGATTCTCAGAATAAGTTTGAGA 897
* * * ** * ** *** * *** * * * * *
consensus_9604#1 TTCTCTTCGATCGATCTCTCGCTAGTCTCTAGTC-------------------------- 692
consensus_9604#2 TTCTCTTCGATCGATCTCTCG-TAGTCTCTAGTTTCTGCCGCTACGGCGAATCTGG---- 663
consensus_9604#0 AGATTGTGATTGAGTATGTC--TAGCCCCTACGTACACATGCTTTCTC-ACTCTAACGCT 954
* * * * * ** *** * ***
consensus_9604#1 ------------------------------------------------------------
consensus_9604#2 ------------------------------------------------------------
consensus_9604#0 ATGATGTTTTTAACTTTTTACTCGAGTAGGAGTGTAGGACAGGACAGCACAAGCAAAACT 1014
consensus_9604#1 ------------------------------------------------------------
consensus_9604#2 ------------------------------------------------------------
consensus_9604#0 CCACGATATACTGGCGTGCTTTTATCCATCCTTCGTCGTTTTCGCATGCAGATACATATT 1074
consensus_9604#1 ------------------------------------------------------------
consensus_9604#2 ------------------------------------------------------------
consensus_9604#0 TTTTTTTAGGTTTGCTTTAGAGTAATGAAGTGAAATAAAACAATTGTTAGGCATTAACAA 1134
consensus_9604#1 ------------------------------------------------------------
consensus_9604#2 ------------------------------------------------------------
consensus_9604#0 CAGGACATCAAGCACTATAAGTCACCGTTGACCCATGATCTAGCTAGAACAACATGCTGA 1194
consensus_9604#1 ------------------------------------------------------------
consensus_9604#2 ------------------------------------------------------------
consensus_9604#0 TAATTGCTTAACCAACCGCGAAATGCCCCTCCTCGATCACTCTGTCTAGTATCCTCACTG 1254
consensus_9604#1 ------------------------------------------------------------
consensus_9604#2 ------------------------------------------------------------
consensus_9604#0 GTAATGAATCATGATATCTATTGATGCCTTGTTCATGCATCTAATCTGTCAGGTTCACAA 1314
consensus_9604#1 ------------------------------------------------------------
consensus_9604#2 ------------------------------------------------------------
consensus_9604#0 TCCTAAAGAAACGATTAAGCAGTCAACCAGCAAAGAAGAGAAGAAATGGCGTAATCAAAA 1374
consensus_9604#1 ------------------------------------------------------------
consensus_9604#2 ------------------------------------------------------------
consensus_9604#0 ACAAAAGCTTTGCAAACACAGCAAGAAGAGGTAGAAGGATGTGTGTTTACTCAAGGAGTC 1434
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||