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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9605#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1382 fasta sequence
[TCTTCTTCCACTTCTCGCGGAGGAGAGGAGATTCCGATCGAGAAGCGGCGGCGGGCGGCCGGCCGGCGGCGAGGGAGAGGGAGAATCGAATATACTGTAGCAGAAGATGCTTCCAATTTTCAATGGCGGGTTAGGAGGAGGAGTTGGCGAACACGCTACCTAATTAGCTAGGTTTCCTTTGCTTCTCCACCATATCCGTTCCCCTCTTCTCCGCTACGATGCAGGCCGCCGCGGCGCCATGGAGGGCCGTGCTACGGACGACCCACCTCCTCGTCGATCCCACGCGTCTCGCCGCGTCCTCCTTCCACTCCACACCCGTCTCCTCCGCCAAGTGGAAGGACAAGTTCGATTGCAGGCATGAACATGGAGCGCGGAAGCTATCCAAGAACTACGAGAGGTATGTTGTTCGTCAAAAACGAGCAGAAGGTAAAAAGGCCCTAAAAGATTATCTTCTATTTGGAAAGAGTTCACCTCATTTACAGGGTGGAAGTACGGGCAGCTTTGCTAATTCGCATGATATCCCACGATTCAAAACCTTTAGGAAAGGATCTCAGTCTCATGGCTCAACAAAGTCGCGACAAGGTGTACACCATCACAGAAAATGTAAAAAAGACAGGGAGAGGTTCTACAATTTCTTCCGTGAGGAGTATTATGTGCATCCTGACAAAATCTTTGAAGACATGTTCGGTGAGAATCATCGTTTTACCTGGTCCCATATATCGTGGGAGAGTTTTAGCTTCAGAGATTCATCGTCCAGATTTCGAAGGACTGGTGAATCGAAGAGAGAAAGAGTTTGTAGCGATAGTGACGATGAAAATGAGGATGAAACAACCAACATTGGGTCACATGCACACCGGGCTATTCTTGGACTACCAGCTTGTGGTCCACTAACTCTAGATGCTGTCAAAACTGC-TTTCCGGG-CATCTGCTCTGAGGTGGCACCCTGACAAGCACCCAGGCT-CAT-CACAGGCCGTGGCCG-AAGAGAAGTTTAAGCTTTGTGTCAACGCATACAATTCTATCTGCAATGTCCT-CAAGGCTGCTTAGCTTTCCTCTTGCATCGATGGTGGTTCAAGCTTGCAGTTGCTGGAGGCTGTGAACTCGCAGCAACAGCATTTCAAGGCTTGTAGCTGACAAGGCCAAGCATGAAGCTGCTGCATTGTTTCAGAGCATCAATCGGATGACACATTCAGTTCACCAACTCACCAAGCTCAGAGAAGGAAGGGGATTTGTGCTGTTGTAACAAACATGTACGTACTACTAATCACTGTAACAAACATCTATTCCTTCATTTGATTTGATTTCCTATTCCTTGAGCGAATAAAACAAACACTGTTCACAGAAACACACTTTTACACAAACAATATAGAAAAGTTGATTGAAAAA]
[+] EMBL AK060617 [TCTTCTTCCACTTCTCGCGGAGGAGAGGAGATTCCGATCGAGAAGCGGCGGCGGGCGGCCGGCCGGCGGCGAGGGAGAGGGAGAATCGAATATACTGTAGCAGAAGATGCTTCCAATTTTCAATGGCGGGTTAGGAGGAGGAGTTGGCGAACACGCTACCTAATTAGCTAGGTTTCCTTTGCTTCTCCACCATATCCGTTCCCCTCTTCTCCGCTACGATGCAGGCCGCCGCGGCGCCATGGAGGGCCGTGCTACGGACGACCCACCTCCTCGTCGATCCCACGCGTCTCGCCGCGTCCTCCTTCCACTCCACACCCGTCTCCTCCGCCAAGTGGAAGGACAAGTTCGATTGCAGGCATGAACATGGAGCGCGGAAGCTATCCAAGAACTACGAGAGGTATGTTGTTCGTCAAAAACGAGCAGAAGGTAAAAAGGCCCTAAAAGATTATCTTCTATTTGGAAAGAGTTCACCTCATTTACAGGGTGGAAGTACGGGCAGCTTTGCTAATTCGCATGATATCCCACGATTCAAAACCTTTAGGAAAGGATCTCAGTCTCATGGCTCAACAAAGTCGCGACAAGGTGTACACCATCACAGAAAATGTAAAAAAGACAGGGAGAGGTTCTACAATTTCTTCCGTGAGGAGTATTATGTGCATCCTGACAAAATCTTTGAAGACATGTTCGGTGAGAATCATCGTTTTACCTGGTCCCATATATCGTGGGAGAGTTTTAGCTTCAGAGATTCATCGTCCAGATTTCGAAGGACTGGTGAATCGAAGAGAGAAAGAGTTTGTAGCGATAGTGACGATGAAAATGAGGATGAAACAACCAACATTGGGTCACATGCACACCGGGCTATTCTTGGACTACCAGCTTGTGGTCCACTAACTCTAGATGCTGTCAAAACTGC TTTCCGGG CATCTGCTCTGAGGTGGCACCCTGACAAGCACCCAGGCT CAT CACAGGCCGTGGCCG AAGAGAAGTTTAAGCTTTGTGTCAACGCATACAATTCTATCTGCAATGTCCT CAAGGCTGCTTAGCTTTCCTCTTGCATCGATGGTGGTTCAAGCTTGCAGTTGCTGGAGGCTGTGAACTCGCAGCAACAGCATTTCAAGGCTTGTAGCTGACAAGGCCAAGCATGAAGCTGCTGCATTGTTTCAGAGCATCAATCGGATGACACATTCAGTTCACCAACTCACCAAGCTCAGAGAAGGAAGGGGATTTGTGCTGTTGTAACAAACATGTACGTACTACTAATCACTGTAACAAACATCTATTCCTTCATTTGATTTGATTTCCTATTCCTTGAGCGAATAAAACAAACA ]
[-] EMBL CF321230 [ TGTGGTCCACTAACTCTAGATGCTGTCAAAACTGC TTTCCGGG CATCTGCTCTGAGGTGGCACCCTGACAAGCACCCAGGCT CAT CACAGGCCGTGGCCG AAGAGAAGTTTAAGCTTTGTGTCAACGCATACAATTCTATCTGCAATGTCCT CAAGGCTGCTTAGCTTTCCTCTTGCATCGATGGTGGTTCAAGCTTGCAGTTGCTGGAGGCTGTGAACTCGCAGCAACAGCATTTCAAGGCTTGTAGCTGACAAGGCCAAGCATGAAGCTGCTGCATTGTTTCAGAGCATCAATCGGATGACACATTCAGTTCACCAACTCACCAAGCTCAGAGAAGGAAGGGGATTTGTGCTGTTGTAACAAACATGTACGTACTACTAATCACTGTAACAAACATCTATTCCTTCATTTGATTTGATTTCCTATTCCTTGAGCGAATAAAACAAACACTGTTCACAGAAACACACTTTTACACAAACAATATAGAAAAGTTGATTGAAAAA]
[+] EMBL C98829 [ ttcAAACTGCTTTTCCGGGNCATCTGCTCTGAGGTGNCACCCTGACAAGCACCCAGGCTNCATCCACAGGCCGTGGCCGAAAGAGANGTTT AGCTTTGTGTCAACGCATACAATTCTATCTGCAATGTCCTCCAAGGCTGCTTAGCTTTCCTCTTGCATCGATGGTGGTTCAAGCTTGCAGTTGCTGGAGGCTGTGAACTCGCAGCAACAGCATTTCAAGGCTTGTAGCTGACAAGGCCAAGCATGAAGCTGCTGCATTGTTTCAGAGCATCAATCGGATGACACATTCAGTTCACCAACTCACCAAGCTCAGAGAAGGAAGGGGATTTGTGCTGTTGTAACAAACATGTACGTACTACTAATCACTGTAACAAACATCTATTCCTTCATTTGATTTGATTTCCTATTCCTTGAGCGAATAAAACAAACACTGTTCACAGAAAaa ]
consensusID : consensus_9605#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 653 fasta sequence
[TTCCCCTCTTCTCCGCTACGATGCAGGCCGCCGCGGCGCCATGGAGGGCCGTGCTACGGACGACCCACCTCCTCGTCGATCCCACGCGTCTCGCCGCGTCCTCCTTCCACTCCACACCCGTCTCCTCCGCCAAGTGGAAGGACAAGTTCGATTGCAAGCATGAACATGGAGCGCGGAAGCTATCCAAGAACTACGAGAGGTATGTTGTTCGTCAAAAACGAGCAGAAGGTAAAAAGGCCCTAAAAGATTATCTTCTATTTGGAAAGAGTTCACCTCATTTACAGGGTGGAAGTACGGGCAGCTTTGCTAATTCGCATGATATCCCACGATTCAAAACCTTTAGGAAAGGATCTCAGTCTCAT-GGCTCAACAAAGTCGCGACAAGGTGTACACCATCACAGAAAAT-GTAAAAAAGACAGGGAGAGGTTCTACAATTTCTTCCGTGAGGAGTATTATGTGCATCCTGACAAAATCTTTGAAGACATGTTCGATTTCGAAGGACTGGTGAATCGAAGAGAGAAAGAGTTTGTAGCGATAGTGACGATGAAAATGAGGATGAAACAACCAACATTGGGTCACATGCACACCGGGCTATTCTTGGACTCCAGCTTGTGGTCCACTAACTCTAGATGCTGTCAAAACTGCTTTCCGGGC]
[+] EMBL CF321229 [TTCCCCTCTTCTCCGCTACGATGCAGGCCGCCGCGGCGCCATGGAGGGCCGTGCTACGGACGACCCACCTCCTCGTCGATCCCACGCGTCTCGCCGCGTCCTCCTTCCACTCCACACCCGTCTCCTCCGCCAAGTGGAAGGACAAGTTCGATTGCAAGCATGAACATGGAGCGCGGAAGCTATCCAAGAACTACGAGAGGTATGTTGTTCGTCAAAAACGAGCAGAAGGTAAAAAGGCCCTAAAAGATTATCTTCTATTTGGAAAGAGTTCACCTCATTTACAGGGTGGAAGTACGGGCAGCTTTGCTAATTCGCATGATATCCCACGATTCAAAACCTTTAGGAAAGGATCTCAGTCTCAT GGCTCAACAAAGTCGCGACAAGGTGTACACCATCACAGAAAAT GTAAAAAAGACAGGGAGAGGTTCTACAATTTCTTCCGTGAGGAGTATTATGTGCATCCTGACAAAATCTTTGAAGACATGTTCGATTTCGAAGGACTGGTGAATCGAAGAGAGAAAGAGTTTGTAGCGATAGTGACGATGAAAATGAGGATGAAACAACCAACATTGGGTCACATGCACACCGGGCTATTCTTGGACTCCAGCTTGTGGTCCACTAACTCTAGATGCTGTCAAAACTGCTTTCCGGGC]
[+] EMBL AU165604 [ AGTTCGATTGCAAGCATGAACATGGAGCGCGGAANCTATCCAAGAACTACGAGAGGTATGTTGTTCGTCAAAAACGAGCAGAAGGTAAAAAGGCCCTAAAAGATTATCTTCTATTTGGAAAGAGTTCACCTCATTTACAGGGTGGAAGTACGGGCAGCTTTGCTAATTCGCATGATATCCCACGATTCAAAACCTTTAGGAAAGGATCTCAGTCTCATGGGCTCAACAAAGTCGCGACAAGGTGTACACCATCACAGAAAATGGTAAAAAAGACAGGGAGAGGTTCTACAATTTCTTCCGTGAGGAGTATT ]
consensusID : consensus_9605#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 373 fasta sequence
[GGACGAGACAAGGGGGTGAGGAGTATTATGTGCATCCTGACAAAATCTTTGAAGACATGTTCGGTGAGAATCATCATTTTACCTGGTCCCATATATCGTGGGAGAGTTTTAGCTTCGGAGATTCATCGTCCAGATTTCGAAGGACTGGTGAATCGAAGAGAGAAAGAGTTTGTAGCGATAGTGACGATGAAAGTGAGGATGAAACAACCAACATTGGGTCACATGCACACCGGGCTATTCTTGGACTACCAGCTTGTGGTCCTCTAACTCTAGATGCTGTCAAAACTGCTTTCCGGGCATCTGCTCTGAGGTGGCACCCTGACAAGCACCCAGGCTCATCACAGGCCGTGGCCGAAGAGAAGTTTAAGCTTTG]
[+] EMBL CA764834 [GGACGAGACAAGGGGGTGAGGAGTATTATGTGCATCCTGACAAAATCTTTGAAGACATGTTCGGTGAGAATCATCATTTTACCTGGTCCCATATATCGTGGGAGAGTTTTAGCTTCGGAGATTCATCGTCCAGATTTCGAAGGACTGGTGAATCGAAGAGAGAAAGAGTTTGTAGCGATAGTGACGATGAAAGTGAGGATGAAACAACCAACATTGGGTCACATGCACACCGGGCTATTCTTGGACTACCAGCTTGTGGTCCTCTAACTCTAGATGCTGTCAAAACTGCTTTCCGGGCATCTGCTCTGAGGTGGCACCCTGACAAGCACCCAGGCTCATCACAGGCCGTGGCCGAAGAGAAGTTTAAGCTTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9605#0 TCTTCTTCCACTTCTCGCGGAGGAGAGGAGATTCCGATCGAGAAGCGGCGGCGGGCGGCC 60
consensus_9605#1 ------------------------------------------------------------
consensus_9605#2 ------------------------------------------------------------
consensus_9605#0 GGCCGGCGGCGAGGGAGAGGGAGAATCGAATATACTGTAGCAGAAGATGCTTCCAATTTT 120
consensus_9605#1 ------------------------------------------------------------
consensus_9605#2 ------------------------------------------------------------
consensus_9605#0 CAATGGCGGGTTAGGAGGAGGAGTTGGCGAACACGCTACCTAATTAGCTAGGTTTCCTTT 180
consensus_9605#1 ------------------------------------------------------------
consensus_9605#2 ------------------------------------------------------------
consensus_9605#0 GCTTCTCCACCATATCCGTTCCCCTCTTCTCCGCTACGATGCAGGCCGCCGCGGCGCCAT 240
consensus_9605#1 ------------------TTCCCCTCTTCTCCGCTACGATGCAGGCCGCCGCGGCGCCAT 42
consensus_9605#2 ------------------------------------------------------------
consensus_9605#0 GGAGGGCCGTGCTACGGACGACCCACCTCCTCGTCGATCCCACGCGTCTCGCCGCGTCCT 300
consensus_9605#1 GGAGGGCCGTGCTACGGACGACCCACCTCCTCGTCGATCCCACGCGTCTCGCCGCGTCCT 102
consensus_9605#2 ------------------------------------------------------------
consensus_9605#0 CCTTCCACTCCACACCCGTCTCCTCCGCCAAGTGGAAGGACAAGTTCGATTGCAGGCATG 360
consensus_9605#1 CCTTCCACTCCACACCCGTCTCCTCCGCCAAGTGGAAGGACAAGTTCGATTGCAAGCATG 162
consensus_9605#2 ------------------------------------------------------------
consensus_9605#0 AACATGGAGCGCGGAAGCTATCCAAGAACTACGAGAGGTATGTTGTTCGTCAAAAACGAG 420
consensus_9605#1 AACATGGAGCGCGGAAGCTATCCAAGAACTACGAGAGGTATGTTGTTCGTCAAAAACGAG 222
consensus_9605#2 ------------------------------------------------------------
consensus_9605#0 CAGAAGGTAAAAAGGCCCTAAAAGATTATCTTCTATTTGGAAAGAGTTCACCTCATTTAC 480
consensus_9605#1 CAGAAGGTAAAAAGGCCCTAAAAGATTATCTTCTATTTGGAAAGAGTTCACCTCATTTAC 282
consensus_9605#2 ------------------------------------------------------------
consensus_9605#0 AGGGTGGAAGTACGGGCAGCTTTGCTAATTCGCATGATATCCCACGATTCAAAACCTTTA 540
consensus_9605#1 AGGGTGGAAGTACGGGCAGCTTTGCTAATTCGCATGATATCCCACGATTCAAAACCTTTA 342
consensus_9605#2 ------------------------------------------------------------
consensus_9605#0 GGAAAGGATCTCAGTCTCATGGCTCAACAAAGTCGCGA-CAAGGTGTACACCATCACAGA 599
consensus_9605#1 GGAAAGGATCTCAGTCTCATGGCTCAACAAAGTCGCGA-CAAGGTGTACACCATCACAGA 401
consensus_9605#2 ----------------GGACGAGACAAGGGGGTGAGGAGTATTATGTGCATCCTGACAAA 44
* * *** ** ** * *** ** * * *** *
consensus_9605#0 AAATGTAAAAA-AGACAGGGAGAGGTTCTACAATTTCTTCCGTGAGGAGTATTATGTGCA 658
consensus_9605#1 AAATGTAAAAA-AGACAGGGAGAGGTTCTACAATTTCTTCCGTGAGGAGTATTATGTGCA 460
consensus_9605#2 ATCTTTGAAGACATGTTCGGTGAGAATCATCATTTTACCTGGTCCCATATATCGTGGGAG 104
* * * ** * * ** *** ** ** *** ** *** ** *
consensus_9605#0 TCCTGACAAAATCTTTGAAGACATGTTCGGTGAGAATCATCGTTTTACCTGGTCCCATAT 718
consensus_9605#1 TCCTGACAAAATCTTTGAAGACATGTTCG------------------------------- 489
consensus_9605#2 AGTTTT----AGCTTCGGAGATTCATCGTCCAG--------------------------- 133
* * *** * *** *
consensus_9605#0 ATCGTGGGAGAGTTTTAGCTTCAGAGATTCATCGTCCAGATTTCGAAGGACTGGTGAATC 778
consensus_9605#1 ---------------------------------------ATTTCGAAGGACTGGTGAATC 510
consensus_9605#2 ---------------------------------------ATTTCGAAGGACTGGTGAATC 154
*********************
consensus_9605#0 GAAGAGAGAAAGAGTTTGTAGCGATAGTGACGATGAAAATGAGGATGAAACAACCAACAT 838
consensus_9605#1 GAAGAGAGAAAGAGTTTGTAGCGATAGTGACGATGAAAATGAGGATGAAACAACCAACAT 570
consensus_9605#2 GAAGAGAGAAAGAGTTTGTAGCGATAGTGACGATGAAAGTGAGGATGAAACAACCAACAT 214
************************************** *********************
consensus_9605#0 TGGGTCACATGCACACCGGGCTATTCTTGGACTACCAGCTTGTGGTCCACTAACTCTAGA 898
consensus_9605#1 TGGGTCACATGCACACCGGGCTATTCTTGGACT-CCAGCTTGTGGTCCACTAACTCTAGA 629
consensus_9605#2 TGGGTCACATGCACACCGGGCTATTCTTGGACTACCAGCTTGTGGTCCTCTAACTCTAGA 274
********************************* ************** ***********
consensus_9605#0 TGCTGTCAAAACTGCTTTCCGGGCATCTGCTCTGAGGTGGCACCCTGACAAGCACCCAGG 958
consensus_9605#1 TGCTGTCAAAACTGCTTTCCGGGC------------------------------------ 653
consensus_9605#2 TGCTGTCAAAACTGCTTTCCGGGCATCTGCTCTGAGGTGGCACCCTGACAAGCACCCAGG 334
************************
consensus_9605#0 CTCATCACAGGCCGTGGCCGAAGAGAAGTTTAAGCTTTGTGTCAACGCATACAATTCTAT 1018
consensus_9605#1 ------------------------------------------------------------
consensus_9605#2 CTCATCACAGGCCGTGGCCGAAGAGAAGTTTAAGCTTTG--------------------- 373
consensus_9605#0 CTGCAATGTCCTCAAGGCTGCTTAGCTTTCCTCTTGCATCGATGGTGGTTCAAGCTTGCA 1078
consensus_9605#1 ------------------------------------------------------------
consensus_9605#2 ------------------------------------------------------------
consensus_9605#0 GTTGCTGGAGGCTGTGAACTCGCAGCAACAGCATTTCAAGGCTTGTAGCTGACAAGGCCA 1138
consensus_9605#1 ------------------------------------------------------------
consensus_9605#2 ------------------------------------------------------------
consensus_9605#0 AGCATGAAGCTGCTGCATTGTTTCAGAGCATCAATCGGATGACACATTCAGTTCACCAAC 1198
consensus_9605#1 ------------------------------------------------------------
consensus_9605#2 ------------------------------------------------------------
consensus_9605#0 TCACCAAGCTCAGAGAAGGAAGGGGATTTGTGCTGTTGTAACAAACATGTACGTACTACT 1258
consensus_9605#1 ------------------------------------------------------------
consensus_9605#2 ------------------------------------------------------------
consensus_9605#0 AATCACTGTAACAAACATCTATTCCTTCATTTGATTTGATTTCCTATTCCTTGAGCGAAT 1318
consensus_9605#1 ------------------------------------------------------------
consensus_9605#2 ------------------------------------------------------------
consensus_9605#0 AAAACAAACACTGTTCACAGAAACACACTTTTACACAAACAATATAGAAAAGTTGATTGA 1378
consensus_9605#1 ------------------------------------------------------------
consensus_9605#2 ------------------------------------------------------------
consensus_9605#0 AAAA 1382
consensus_9605#1 ----
consensus_9605#2 ----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||