These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9606#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 631 fasta sequence [CTTTTTATGTTTGGGCATGAGTATTTCACAATTGATAGAAGCGATATTTATCGATTACATTTTTATTAATTTTGACATACA-TTACAAGTACAAGGAACTAA-TTAGGAATAATAGATACCCATTGACCGATACAAATGAATACAACAGAAGCGGAAACCAACACCAGAGAAACACATGCACATACATTACACATAGCTTCCCCCGTCTCTAGTTGCATGGCATGCAAGAAAGATATATAATACCATCACCATCCCAAAATATAATAAGTTTTAGATAGGATATACGGATATATTACGAAAGTTACAGGAATAAAATGAAAAAAAAAGGCAGTTGGGATTGATTGATAAGAGGAGAAATATATATGTAAGAAATTTAATTAATGGAAGGTTACGATTGTTTTATAAGAGAATATAGGTGAAGAAGTTGCTATATTTTGAGATAAATTTTAGAGGCTAAAAGTAATTATATTTTGGGAAAGATGAGTAATAATAATTAAGTTAATTAATTGGTGGTAGCTTGTCTCCTCCAAGTTTGCCCTGGAGTTCATATTAAAGTGTACGTGGCACGTGGTACTGCACACGTGCATGGCCCATGCAAGCACGCGTTGACCGGCCGGGGACCCTACACGGCG] [+] EMBL CB647391 [CTTTTTATGTTTGGGCATGAGTATTTCACAATTGATAGAAGCGATATTTATCGATTACATTTTTATTAATTTTGACATACA TTACAAGTACAAGGAACTAA TTAGGAATAATAGATACCCATTGACCGATACAAATGAATACAACAGAAGCGGAAACCAACACCAGAGAAACACATGCACATACATTACACATAGCTTCCCCCGTCTCTAGTTGCATGGCATGCAAGAAAGATATATAATACCATCACCATCCCAAAATATAATAAGTTTTAGATAGGATATACGGATATATTACGAAAGTTACAGGAATAAAATGAAAAAAAAAGGCAGTTGGGATTGATTGATAAGAGGAGAAATATATATGTAAGAAATTTAATTAATGGAAGGTTACGATTGTTTTATAAGAGAATATAGGTGAAGAAGTTGCTATATTTTGAGATAAATTTTAGAGGCTAAAAGTAATTATATTTTGGGAAAGATGAGTAATAATAATTAAGTTAATTAATTGGTGGTAGCTTGTCTCCTCCAAGTTTGCCCTGGAGTTCATATTAAAGTGTACGTGGCACGTGGTACTGCACACGTGCATGGCCCATGCAAGCACGCGTTGACCGGCCGGGGACCCTACACG ] [-] EMBL BI802327 [ ttTTGATAGAAGAGATATTTATCGATTAC TTTTTATTAATTTTGACATACATTTACAAGTACAAGGAACTAATTTAGGAATAATAGATACCCATTGACCGATACAAATGAATACAACAGAAGCGGAAA CAA ACCAGAGAAACACATGCACATACATTACACATAGCTTCCCCCGTCTCTAGTTGCATGGCATGCAAGAAAGATATATAATACCATCACCATCCCAAAATATAATAAGTTTTAGATAGGATATACGGATATATTACGAAAGTTACAGAAATAAAATG AAAAAAAAGGCAGTTGGGATTGATTGATAAGAGGAGAAATATATGTGTAAGAAATTTAATTAATGGAAGGTTAC AATGTTTTATAAGAGAATATAGGTGAAGAAGTTGCTATATTTTGAGATAAATTTTAGAGGCTAAAGGTTAT ] [+] EMBL CB669987 [ TTACATTTTTCCTTTTTTTGACATACA TTACAAGGACAAGGAACTAA TTAGGAATAATAAATACCCATTGACCGATACAAATGAATACAACAGAAGCGGAAACCAACACCAGAAAAACACATGCACATACATTACACATAGCTTCCCCCGTCTCTAGTTGCATGGCATGCAAGAAAGATATATAATACCATCCCCATCCCAAAATATAATAAGTTTTAGATAGGATATACGGATATATTACGAAAGTTACAGGAATAAAATGAAAAAAAAAGGCAGTTGGGATTGATTGATAAGAGGAGAAATATATATGTAAAAAATTTAATTAATGGAAGGTTACCATTGTTTTATAAAAAAATATAGGTGAAAAAGTTGCTATATTTTGAGATAAATTTTAGAGGCTAAAAGTAATTATATTTTGGGAAAGATGAGTAATAATAATTAAGTTAATTAATTGGGGGGAGCTTGTCTCCTCCAAGTTTGCCCTGGAGTTCATATTAAAGTGTACGTGGCACGTGGTACTGCACACGTGCATGGCCCATGCAAGCACGCGTTGACCGGCCGGGGACCCTACACGGCG] consensusID : consensus_9606#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 486 fasta sequence [TTTTTTTTTTAATAAGAGATCATGTGTGCATGAGTATTTCACAATTGATAGAAGAGATATTTATCGATTACATTTTTATTAATTTGGACATACATTACAAGTACAAGGAACTAATTAGGAATAATAGATACCCATGGACCGATACAAATGAATACAACAGAAGCGGAAACCAACACCAGAGAAACACATGCACATACATTACACATAGCTTCCCCCGTCTCTAGTTGCATGGCATGCAAGAAAGATATATAATACCATCACCATCCCAAAATATAATAAGTTTTACGATAGAACTATACCGGATATATTACGAAAGTTACCCGAAATAACACACTGAAACAAAAAAGGCGTNGGGACTTGATTGATAAGAGGAGAAATATATATGTAAGAAATTTAATTAAGGGAAGGTTATGACTGTTTATAAGACGAACTATAGGTGAAGAAGTTGCTATAATTTGAGATAANACTTTTAGAGGCTAAGGTTAT] [-] EMBL BM037786 [TTTTTTTTTTAATAAGAGATCATGTGTGCATGAGTATTTCACAATTGATAGAAGAGATATTTATCGATTACATTTTTATTAATTTGGACATACATTACAAGTACAAGGAACTAATTAGGAATAATAGATACCCATGGACCGATACAAATGAATACAACAGAAGCGGAAACCAACACCAGAGAAACACATGCACATACATTACACATAGCTTCCCCCGTCTCTAGTTGCATGGCATGCAAGAAAGATATATAATACCATCACCATCCCAAAATATAATAAGTTTTACGATAGAACTATACCGGATATATTACGAAAGTTACCCGAAATAACACACTGAAACAAAAAAGGCGTNGGGACTTGATTGATAAGAGGAGAAATATATATGTAAGAAATTTAATTAAGGGAAGGTTATGACTGTTTATAAGACGAACTATAGGTGAAGAAGTTGCTATAATTTGAGATAANACTTTTAGAGGCTAAGGTTAT] consensusID : consensus_9606#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 349 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNATCGATTACATTTTTATTAATTTTGACATACATTACAAGTACAAGGAACTAATTAGGAATAATAGATACCCATTGACCGATACAAATGAATACAACAGAAGCGGAAACCAACACCAGAGAAACACATGCACATACATTACACATAGCTTCCCCCGTCTCTAGTTGCATGGCATGCAAGAAAGATATATAATACCATCACCATCCCAAAATATAATAAGTTTTAGATAGGATATACGGATATATTACGAAAGTTACAGGAATAAAAA] [+] EMBL AU176554 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNATCGATTACATTTTTATTAATTTTGACATACATTACAAGTACAAGGAACTAATTAGGAATAATAGATACCCATTGACCGATACAAATGAATACAACAGAAGCGGAAACCAACACCAGAGAAACACATGCACATACATTACACATAGCTTCCCCCGTCTCTAGTTGCATGGCATGCAAGAAAGATATATAATACCATCACCATCCCAAAATATAATAAGTTTTAGATAGGATATACGGATATATTACGAAAGTTACAGGAATAAAAA] [-] EMBL AU165617 [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCGATTACATTTTTATTAATTTTGACATACATTACAAGTACAAGGAACTAATTAGGNATNATAGATACCCATTGACCGATACAAATGAATACAACAGAAGCGGAAACCAACACCAGAGAAACACATGNACATACATTACACATAGCTTCCCt ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9606#0 -------------------------CTTTTTA---------TGTTTGGGCATGAGTATTT 26 consensus_9606#1 ---------------------TTTTTTTTTTAATAAGAGATCATGTGTGCATGAGTATTT 39 consensus_9606#2 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60 ***** * * * * *** consensus_9606#0 CACAATTGATAGAAGCGATATTTATCGATTACATTTTTATTAATTTTGACATACATTACA 86 consensus_9606#1 CACAATTGATAGAAGAGATATTTATCGATTACATTTTTATTAATTTGGACATACATTACA 99 consensus_9606#2 TTTTTTTTTTTTTTTTTTTTTTNATCGATTACATTTTTATTAATTTTGACATACATTACA 120 ** * * ** *********************** ************* consensus_9606#0 AGTACAAGGAACTAATTAGGAATAATAGATACCCATTGACCGATACAAATGAATACAACA 146 consensus_9606#1 AGTACAAGGAACTAATTAGGAATAATAGATACCCATGGACCGATACAAATGAATACAACA 159 consensus_9606#2 AGTACAAGGAACTAATTAGGAATAATAGATACCCATTGACCGATACAAATGAATACAACA 180 ************************************ *********************** consensus_9606#0 GAAGCGGAAACCAACACCAGAGAAACACATGCACATACATTACACATAGCTTCCCCCGTC 206 consensus_9606#1 GAAGCGGAAACCAACACCAGAGAAACACATGCACATACATTACACATAGCTTCCCCCGTC 219 consensus_9606#2 GAAGCGGAAACCAACACCAGAGAAACACATGCACATACATTACACATAGCTTCCCCCGTC 240 ************************************************************ consensus_9606#0 TCTAGTTGCATGGCATGCAAGAAAGATATATAATACCATCACCATCCCAAAATATAATAA 266 consensus_9606#1 TCTAGTTGCATGGCATGCAAGAAAGATATATAATACCATCACCATCCCAAAATATAATAA 279 consensus_9606#2 TCTAGTTGCATGGCATGCAAGAAAGATATATAATACCATCACCATCCCAAAATATAATAA 300 ************************************************************ consensus_9606#0 GTTTTA-GATAGGA-TATAC-GGATATATTACGAAAGTTAC----AGGAATAAAATGAAA 319 consensus_9606#1 GTTTTACGATAGAACTATACCGGATATATTACGAAAGTTACCCGAAATAACACACTGAAA 339 consensus_9606#2 GTTTTA-GATAGGA-TATAC-GGATATATTACGAAAGTTAC----AGGAATAAAAA---- 349 ****** ***** * ***** ******************** * ** * * consensus_9606#0 AAAAAAGGCAGTTGGGA-TTGATTGATAAGAGGAGAAATATATATGTAAGAAATTTAATT 378 consensus_9606#1 CAAAAAAGGCGTNGGGACTTGATTGATAAGAGGAGAAATATATATGTAAGAAATTTAATT 399 consensus_9606#2 ------------------------------------------------------------ consensus_9606#0 AATGGAAGGTTACGATTGTTT-TATAAGAGAATATAGGTGAAGAAGTTGCTATATTTTGA 437 consensus_9606#1 AAGGGAAGGTTATGACTGTTTATAAGACGAACTATAGGTGAAGAAGTTGCTATAATTTGA 459 consensus_9606#2 ------------------------------------------------------------ consensus_9606#0 GATAAA--TTTTAGAGGCTAAAAGTAATTATATTTTGGGAAAGATGAGTAATAATAATTA 495 consensus_9606#1 GATAANACTTTTAGAGGCTAAGGTTAT--------------------------------- 486 consensus_9606#2 ------------------------------------------------------------ consensus_9606#0 AGTTAATTAATTGGTGGTAGCTTGTCTCCTCCAAGTTTGCCCTGGAGTTCATATTAAAGT 555 consensus_9606#1 ------------------------------------------------------------ consensus_9606#2 ------------------------------------------------------------ consensus_9606#0 GTACGTGGCACGTGGTACTGCACACGTGCATGGCCCATGCAAGCACGCGTTGACCGGCCG 615 consensus_9606#1 ------------------------------------------------------------ consensus_9606#2 ------------------------------------------------------------ consensus_9606#0 GGGACCCTACACGGCG 631 consensus_9606#1 ---------------- consensus_9606#2 ---------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||