cluster # 9606

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Oryza sativa
cluster # 9606 cluster # 9606 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9606#0 length = 631 sequences # 3

consensus_9606#1 length = 486 sequences # 1
consensus_9606#2 length = 349 sequences # 2

consensusID : consensus_9606#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 631
fasta sequence

                              [CTTTTTATGTTTGGGCATGAGTATTTCACAATTGATAGAAGCGATATTTATCGATTACATTTTTATTAATTTTGACATACA-TTACAAGTACAAGGAACTAA-TTAGGAATAATAGATACCCATTGACCGATACAAATGAATACAACAGAAGCGGAAACCAACACCAGAGAAACACATGCACATACATTACACATAGCTTCCCCCGTCTCTAGTTGCATGGCATGCAAGAAAGATATATAATACCATCACCATCCCAAAATATAATAAGTTTTAGATAGGATATACGGATATATTACGAAAGTTACAGGAATAAAATGAAAAAAAAAGGCAGTTGGGATTGATTGATAAGAGGAGAAATATATATGTAAGAAATTTAATTAATGGAAGGTTACGATTGTTTTATAAGAGAATATAGGTGAAGAAGTTGCTATATTTTGAGATAAATTTTAGAGGCTAAAAGTAATTATATTTTGGGAAAGATGAGTAATAATAATTAAGTTAATTAATTGGTGGTAGCTTGTCTCCTCCAAGTTTGCCCTGGAGTTCATATTAAAGTGTACGTGGCACGTGGTACTGCACACGTGCATGGCCCATGCAAGCACGCGTTGACCGGCCGGGGACCCTACACGGCG]

[+] EMBL CB647391             [CTTTTTATGTTTGGGCATGAGTATTTCACAATTGATAGAAGCGATATTTATCGATTACATTTTTATTAATTTTGACATACA TTACAAGTACAAGGAACTAA TTAGGAATAATAGATACCCATTGACCGATACAAATGAATACAACAGAAGCGGAAACCAACACCAGAGAAACACATGCACATACATTACACATAGCTTCCCCCGTCTCTAGTTGCATGGCATGCAAGAAAGATATATAATACCATCACCATCCCAAAATATAATAAGTTTTAGATAGGATATACGGATATATTACGAAAGTTACAGGAATAAAATGAAAAAAAAAGGCAGTTGGGATTGATTGATAAGAGGAGAAATATATATGTAAGAAATTTAATTAATGGAAGGTTACGATTGTTTTATAAGAGAATATAGGTGAAGAAGTTGCTATATTTTGAGATAAATTTTAGAGGCTAAAAGTAATTATATTTTGGGAAAGATGAGTAATAATAATTAAGTTAATTAATTGGTGGTAGCTTGTCTCCTCCAAGTTTGCCCTGGAGTTCATATTAAAGTGTACGTGGCACGTGGTACTGCACACGTGCATGGCCCATGCAAGCACGCGTTGACCGGCCGGGGACCCTACACG   ]
[-] EMBL BI802327             [                             ttTTGATAGAAGAGATATTTATCGATTAC TTTTTATTAATTTTGACATACATTTACAAGTACAAGGAACTAATTTAGGAATAATAGATACCCATTGACCGATACAAATGAATACAACAGAAGCGGAAA CAA ACCAGAGAAACACATGCACATACATTACACATAGCTTCCCCCGTCTCTAGTTGCATGGCATGCAAGAAAGATATATAATACCATCACCATCCCAAAATATAATAAGTTTTAGATAGGATATACGGATATATTACGAAAGTTACAGAAATAAAATG AAAAAAAAGGCAGTTGGGATTGATTGATAAGAGGAGAAATATATGTGTAAGAAATTTAATTAATGGAAGGTTAC AATGTTTTATAAGAGAATATAGGTGAAGAAGTTGCTATATTTTGAGATAAATTTTAGAGGCTAAAGGTTAT                                                                                                                                                                        ]
[+] EMBL CB669987             [                                                      TTACATTTTTCCTTTTTTTGACATACA TTACAAGGACAAGGAACTAA TTAGGAATAATAAATACCCATTGACCGATACAAATGAATACAACAGAAGCGGAAACCAACACCAGAAAAACACATGCACATACATTACACATAGCTTCCCCCGTCTCTAGTTGCATGGCATGCAAGAAAGATATATAATACCATCCCCATCCCAAAATATAATAAGTTTTAGATAGGATATACGGATATATTACGAAAGTTACAGGAATAAAATGAAAAAAAAAGGCAGTTGGGATTGATTGATAAGAGGAGAAATATATATGTAAAAAATTTAATTAATGGAAGGTTACCATTGTTTTATAAAAAAATATAGGTGAAAAAGTTGCTATATTTTGAGATAAATTTTAGAGGCTAAAAGTAATTATATTTTGGGAAAGATGAGTAATAATAATTAAGTTAATTAATTGGGGGGAGCTTGTCTCCTCCAAGTTTGCCCTGGAGTTCATATTAAAGTGTACGTGGCACGTGGTACTGCACACGTGCATGGCCCATGCAAGCACGCGTTGACCGGCCGGGGACCCTACACGGCG]




>consensus_9606#0
CTTTTTATGTTTGGGCATGAGTATTTCACAATTGATAGAAGCGATATTTATCGATTACAT
TTTTATTAATTTTGACATACATTACAAGTACAAGGAACTAATTAGGAATAATAGATACCC
ATTGACCGATACAAATGAATACAACAGAAGCGGAAACCAACACCAGAGAAACACATGCAC
ATACATTACACATAGCTTCCCCCGTCTCTAGTTGCATGGCATGCAAGAAAGATATATAAT
ACCATCACCATCCCAAAATATAATAAGTTTTAGATAGGATATACGGATATATTACGAAAG
TTACAGGAATAAAATGAAAAAAAAAGGCAGTTGGGATTGATTGATAAGAGGAGAAATATA
TATGTAAGAAATTTAATTAATGGAAGGTTACGATTGTTTTATAAGAGAATATAGGTGAAG
AAGTTGCTATATTTTGAGATAAATTTTAGAGGCTAAAAGTAATTATATTTTGGGAAAGAT
GAGTAATAATAATTAAGTTAATTAATTGGTGGTAGCTTGTCTCCTCCAAGTTTGCCCTGG
AGTTCATATTAAAGTGTACGTGGCACGTGGTACTGCACACGTGCATGGCCCATGCAAGCA
CGCGTTGACCGGCCGGGGACCCTACACGGCG

consensusID : consensus_9606#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 486
fasta sequence

                              [TTTTTTTTTTAATAAGAGATCATGTGTGCATGAGTATTTCACAATTGATAGAAGAGATATTTATCGATTACATTTTTATTAATTTGGACATACATTACAAGTACAAGGAACTAATTAGGAATAATAGATACCCATGGACCGATACAAATGAATACAACAGAAGCGGAAACCAACACCAGAGAAACACATGCACATACATTACACATAGCTTCCCCCGTCTCTAGTTGCATGGCATGCAAGAAAGATATATAATACCATCACCATCCCAAAATATAATAAGTTTTACGATAGAACTATACCGGATATATTACGAAAGTTACCCGAAATAACACACTGAAACAAAAAAGGCGTNGGGACTTGATTGATAAGAGGAGAAATATATATGTAAGAAATTTAATTAAGGGAAGGTTATGACTGTTTATAAGACGAACTATAGGTGAAGAAGTTGCTATAATTTGAGATAANACTTTTAGAGGCTAAGGTTAT]

[-] EMBL BM037786             [TTTTTTTTTTAATAAGAGATCATGTGTGCATGAGTATTTCACAATTGATAGAAGAGATATTTATCGATTACATTTTTATTAATTTGGACATACATTACAAGTACAAGGAACTAATTAGGAATAATAGATACCCATGGACCGATACAAATGAATACAACAGAAGCGGAAACCAACACCAGAGAAACACATGCACATACATTACACATAGCTTCCCCCGTCTCTAGTTGCATGGCATGCAAGAAAGATATATAATACCATCACCATCCCAAAATATAATAAGTTTTACGATAGAACTATACCGGATATATTACGAAAGTTACCCGAAATAACACACTGAAACAAAAAAGGCGTNGGGACTTGATTGATAAGAGGAGAAATATATATGTAAGAAATTTAATTAAGGGAAGGTTATGACTGTTTATAAGACGAACTATAGGTGAAGAAGTTGCTATAATTTGAGATAANACTTTTAGAGGCTAAGGTTAT]




>consensus_9606#1
TTTTTTTTTTAATAAGAGATCATGTGTGCATGAGTATTTCACAATTGATAGAAGAGATAT
TTATCGATTACATTTTTATTAATTTGGACATACATTACAAGTACAAGGAACTAATTAGGA
ATAATAGATACCCATGGACCGATACAAATGAATACAACAGAAGCGGAAACCAACACCAGA
GAAACACATGCACATACATTACACATAGCTTCCCCCGTCTCTAGTTGCATGGCATGCAAG
AAAGATATATAATACCATCACCATCCCAAAATATAATAAGTTTTACGATAGAACTATACC
GGATATATTACGAAAGTTACCCGAAATAACACACTGAAACAAAAAAGGCGTNGGGACTTG
ATTGATAAGAGGAGAAATATATATGTAAGAAATTTAATTAAGGGAAGGTTATGACTGTTT
ATAAGACGAACTATAGGTGAAGAAGTTGCTATAATTTGAGATAANACTTTTAGAGGCTAA
GGTTAT

consensusID : consensus_9606#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 349
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNATCGATTACATTTTTATTAATTTTGACATACATTACAAGTACAAGGAACTAATTAGGAATAATAGATACCCATTGACCGATACAAATGAATACAACAGAAGCGGAAACCAACACCAGAGAAACACATGCACATACATTACACATAGCTTCCCCCGTCTCTAGTTGCATGGCATGCAAGAAAGATATATAATACCATCACCATCCCAAAATATAATAAGTTTTAGATAGGATATACGGATATATTACGAAAGTTACAGGAATAAAAA]

[+] EMBL AU176554             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNATCGATTACATTTTTATTAATTTTGACATACATTACAAGTACAAGGAACTAATTAGGAATAATAGATACCCATTGACCGATACAAATGAATACAACAGAAGCGGAAACCAACACCAGAGAAACACATGCACATACATTACACATAGCTTCCCCCGTCTCTAGTTGCATGGCATGCAAGAAAGATATATAATACCATCACCATCCCAAAATATAATAAGTTTTAGATAGGATATACGGATATATTACGAAAGTTACAGGAATAAAAA]
[-] EMBL AU165617             [                       TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCGATTACATTTTTATTAATTTTGACATACATTACAAGTACAAGGAACTAATTAGGNATNATAGATACCCATTGACCGATACAAATGAATACAACAGAAGCGGAAACCAACACCAGAGAAACACATGNACATACATTACACATAGCTTCCCt                                                                                                                 ]




>consensus_9606#2
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTNATCGATTACATTTTTATTAATTTTGACATACATTACA
AGTACAAGGAACTAATTAGGAATAATAGATACCCATTGACCGATACAAATGAATACAACA
GAAGCGGAAACCAACACCAGAGAAACACATGCACATACATTACACATAGCTTCCCCCGTC
TCTAGTTGCATGGCATGCAAGAAAGATATATAATACCATCACCATCCCAAAATATAATAA
GTTTTAGATAGGATATACGGATATATTACGAAAGTTACAGGAATAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9606#0      -------------------------CTTTTTA---------TGTTTGGGCATGAGTATTT 26
consensus_9606#1      ---------------------TTTTTTTTTTAATAAGAGATCATGTGTGCATGAGTATTT 39
consensus_9606#2      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60
                                                *****            * *     *   * ***

consensus_9606#0      CACAATTGATAGAAGCGATATTTATCGATTACATTTTTATTAATTTTGACATACATTACA 86
consensus_9606#1      CACAATTGATAGAAGAGATATTTATCGATTACATTTTTATTAATTTGGACATACATTACA 99
consensus_9606#2      TTTTTTTTTTTTTTTTTTTTTTNATCGATTACATTTTTATTAATTTTGACATACATTACA 120
                           **  *        * ** *********************** *************

consensus_9606#0      AGTACAAGGAACTAATTAGGAATAATAGATACCCATTGACCGATACAAATGAATACAACA 146
consensus_9606#1      AGTACAAGGAACTAATTAGGAATAATAGATACCCATGGACCGATACAAATGAATACAACA 159
consensus_9606#2      AGTACAAGGAACTAATTAGGAATAATAGATACCCATTGACCGATACAAATGAATACAACA 180
                      ************************************ ***********************

consensus_9606#0      GAAGCGGAAACCAACACCAGAGAAACACATGCACATACATTACACATAGCTTCCCCCGTC 206
consensus_9606#1      GAAGCGGAAACCAACACCAGAGAAACACATGCACATACATTACACATAGCTTCCCCCGTC 219
consensus_9606#2      GAAGCGGAAACCAACACCAGAGAAACACATGCACATACATTACACATAGCTTCCCCCGTC 240
                      ************************************************************

consensus_9606#0      TCTAGTTGCATGGCATGCAAGAAAGATATATAATACCATCACCATCCCAAAATATAATAA 266
consensus_9606#1      TCTAGTTGCATGGCATGCAAGAAAGATATATAATACCATCACCATCCCAAAATATAATAA 279
consensus_9606#2      TCTAGTTGCATGGCATGCAAGAAAGATATATAATACCATCACCATCCCAAAATATAATAA 300
                      ************************************************************

consensus_9606#0      GTTTTA-GATAGGA-TATAC-GGATATATTACGAAAGTTAC----AGGAATAAAATGAAA 319
consensus_9606#1      GTTTTACGATAGAACTATACCGGATATATTACGAAAGTTACCCGAAATAACACACTGAAA 339
consensus_9606#2      GTTTTA-GATAGGA-TATAC-GGATATATTACGAAAGTTAC----AGGAATAAAAA---- 349
                      ****** ***** * ***** ********************    *  ** * *      

consensus_9606#0      AAAAAAGGCAGTTGGGA-TTGATTGATAAGAGGAGAAATATATATGTAAGAAATTTAATT 378
consensus_9606#1      CAAAAAAGGCGTNGGGACTTGATTGATAAGAGGAGAAATATATATGTAAGAAATTTAATT 399
consensus_9606#2      ------------------------------------------------------------
                                                                                  

consensus_9606#0      AATGGAAGGTTACGATTGTTT-TATAAGAGAATATAGGTGAAGAAGTTGCTATATTTTGA 437
consensus_9606#1      AAGGGAAGGTTATGACTGTTTATAAGACGAACTATAGGTGAAGAAGTTGCTATAATTTGA 459
consensus_9606#2      ------------------------------------------------------------
                                                                                  

consensus_9606#0      GATAAA--TTTTAGAGGCTAAAAGTAATTATATTTTGGGAAAGATGAGTAATAATAATTA 495
consensus_9606#1      GATAANACTTTTAGAGGCTAAGGTTAT--------------------------------- 486
consensus_9606#2      ------------------------------------------------------------
                                                                                  

consensus_9606#0      AGTTAATTAATTGGTGGTAGCTTGTCTCCTCCAAGTTTGCCCTGGAGTTCATATTAAAGT 555
consensus_9606#1      ------------------------------------------------------------
consensus_9606#2      ------------------------------------------------------------
                                                                                  

consensus_9606#0      GTACGTGGCACGTGGTACTGCACACGTGCATGGCCCATGCAAGCACGCGTTGACCGGCCG 615
consensus_9606#1      ------------------------------------------------------------
consensus_9606#2      ------------------------------------------------------------
                                                                                  

consensus_9606#0      GGGACCCTACACGGCG 631
consensus_9606#1      ----------------
consensus_9606#2      ----------------