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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9616#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1334 fasta sequence
[AGCGCGCCCCCGCCGCGCGCCGCCTACCTCCGCCGCCCGCGCGCGCACCACGCCAACGACCTGCGCCTGCGCCGCACGCGCCGCGCCGCGGCGGCGGCGGCGGCCGGCGACCGCTCGCCGTTCAACCCCGTCATCGTGCTTCGCCGTTCCCCCGCCGCCGCCGGCGACGACGACTCCCTCGCCGCCGCCACCAGCTTCGAGCTCTTCTACGACGACGGCGCGGGCTCCGGCCTCCGCCCGCTCCCGGAGACCATGTTGNACTTCCTCATGGGCTCCGGCTTCGAGCGCCTCCTCGACCAGCTCACCCAGATCGAGGCCGGCGGCCTCGCCCGCGCCAGGGAGAACCCACCGGCCTCCAAGGCCTCCGTCGAGTCCATGCCCACCGTCACCATCGCCGCCTCCCACGTCGGCGCAGACTCCCACTGCGCCGTCTGCAAGGAGCCCTTCGAGCTCGGCGACGAGGCCAGGGAGATGCCCTGCAGCCACATCTACCACCAGGACTGCATCCTCCCATGGCTCGCGCTCCGCAACTCCTGCCCGGTCTGCCGCCACGAGATGCCCACCGACGCCGCCCGCCCGCGGCCCAGCAATGCCGGCACAGAGGAGGAGACGGTCGGCCTCACCATCTGGAGGCTGCCCGGAGGCGGCTTCGCCGTCGGTAGGTTCGCCGGAGGGAGGAGGCCCGAGGAGAGGGAGCTTCCAGTTGTGTACACCGAGATGGATGGAGGGTTCAACAACGGCGGCGCGCCGAGGAGGATCTCCTGGGGTTCGAGGCAGAGCCGATCGACGGAGAGGAGTGCCATTAGGCGCATCTTCCGCAATGTGTTCTCGTGCTTTGGTCGCAGCCATTCATCGAATTCTCAGGCCTCGTCTTCGCATTCGAGGCCGGAGTTGAACGATGCGTCTGACCGGAGCGCCGTGTTCAGCCATGGCTCAAGAAGCCGGAGCACGAGCTGGAGGCTCGAAGATGGCCATGCCGACGCCATGGTGCAAAGATAGGCCTCAACTGAAGTAAGGAAGGTCGTCGATTGTTTCCATTTCGCGCATATGTATTTAGAGGAAAAGAAATTTGTAGTAGAACAGAATTGAGAATTGGTGTTGTACATAGGAGCAGCATCACATCTACTAGTAGATGATAACTTGCAGGGAAGAAGATGCCCACGATGGTGATTCTGAAATGAGCATTTGTTGTTTAGAGTGATGAATTTGCTCTTGCTGGTAGCAAATGTCGCTTGGAATTCTAGGATTCATTCAAATTCATTGTGGCGATGATTCTTTGCATCTGTGAGAACGGAATGAATGAAACCATTTTGAAGGGTGCAGTCTTGCAGGAT]
[+] EMBL AU166857 [AGCGCGCCCCCGCCGCGCGCCGCCTACCTCCGCCGCCCGCGCGCGCACCACGCCAACGACCTGCGCCTGCGCCGCACGCGCCGCGCCGCGGCGGCGGCGGCGGCCGGCGACCGCTCGCCGTTCAACCCCGTCATCGTGCTTCGCCGTTCCCCCGCCGCCGCCGGCGACGACGACTCCCTCGCCGCCGCCACCAGCTTCGAGCTCTTCTACGACGACGGCGCGGGCTCCGGCCTCCGCCCGCTCCCGGAGACCATGTTGNACTTCCT ]
[+] EMBL AK067181 [ GCGCCCCCGCCGCGCGCCGCCTACCTCCGCCGCCCGCGCGCGCACCACGCCAACGACCTGCGCCTGCGCCGCACGCGCCGCGCCGCGGCGGCGGCGGCGGCCGGCGACCGCTCGCCGTTCAACCCCGTCATCGTGCTTCGCCGCTCCCCCGCCGCCGCCGGCGACGACGACTCCCTCGCCGCCGCCACCAGCTTCGAGCTCTTCTACGACGACGGCGCGGGCTCCGGCCTCCGCCCGCTCCCGGAGACCATGTCGGACTTCCTCATGGGCTCCGGCTTCGAGCGCCTCCTCGACCAGCTCACCCAGATCGAGGCCGGCGGCCTCGCCCGCGCCAGGGAGAACCCACCGGCCTCCAAGGCCTCCGTCGAGTCCATGCCCACCGTCACCATCGCCGCCTCCCACGTCGGCGCAGACTCCCACTGCGCCGTCTGCAAGGAGCCCTTCGAGCTCGGCGACGAGGCCAGGGAGATGCCCTGCAGCCACATCTACCACCAGGACTGCATCCTCCCATGGCTCGCGCTCCGCAACTCCTGCCCGGTCTGCCGCCACGAGATGCCCACCGACGCCGCCCGCCCGCGGCCCAGCAATGCCGGCACAGAGGAGGAGACGGTCGGCCTCACCATCTGGAGGCTGCCCGGAGGCGGCTTCGCCGTCGGTAGGTTCGCCGGAGGGAGGAGGCCCGAGGAGAGGGAGCTTCCAGTTGTGTACACCGAGATGGATGGAGGGTTCAACAACGGCGGCGCGCCGAGGAGGATCTCCTGGGGTTCGAGGCAGAGCCGATCGACGGAGAGGAGTGCCATTAGGCGCATCTTCCGCAATGTGTTCTCGTGCTTTGGTCGCAGCCATTCATCGAATTCTCAGGCCTCGTCTTCGCATTCGAGGCCGGAGTTGAACGATGCGTCTGACCGGAGCGCCGTGTTCAGCCATGGCTCAAGAAGCCGGAGCACGAGCTGGAGGCTCGAAGATGGCCATGCCGACGCCATGGTGCAAAGATAGGCCTCAACTGAAGTAAGGAAGGTCGTCGATTGTTTCCATTTCGCGCATATGTATTTAGAGGAAAAGAAATTTGTAGTAGAACAGAATTGAGAATTGGTGTTGTACATAGGAGCAGCATCACATCTACTAGTAGATGATAACTTGCAGGGAAGAAGATGCCCACGATGGTGATTCTGAAATGAGCATTTGTTGTTTAGAGTGATGAATTTGCTCTTGCTGGTAGCAAATGTCGCTTGGAATTCTATGATTCATTCAAATTCATTGTGGCGATGATTCTTTGCATCTGTGAGAACGGAATGAATGAAACCATTT ]
[-] EMBL CB651887 [ AACTCCTGCCCGGTCTGCCGCCACGAGATGCCCACCGACGCCGCCCGCCCGCGGCCCAGCAATGCCGGCACAGAGGAGGAGACGGTCGGCCTCACCATCTGGAGGCTGCCCGGAGGCGGCTTCGCCGTCGGTAGGTTCGCCGGAGGGAGGAGGCCCGAGGAGAGGGAGCTTCCAGTTGTGTACACCGAGATGGATGGAGGGTTCAACAACGGCGGCGCGCCGAGGAGGATCTCCTGGGGTTCGAGGCAGAGCCGATCGACGGAGAGGAGTGCCATTAGGCGCATCTTCCGCAATGTGTTCTCGTGCTTTGGTCGCAGCCATTCATCGAATTCTCAGGCCTCGTCTTCGCATTCGAGGCCGGAGTTGAACGATGCGTCTGACCGGAGCGCCGTGTTCAGCCATGGCTCAAGAAGCCGGAGCACGAGCTGGAGGCTCGAAGATGGCCATGCCGACGCCATGGTGCAAAGATAGGCCTCAACTGAAGTAAGGAAGGTCGTCGATTGTTTCCATTTCGCGCATATGTATTTAGAGGAAAAGAAATTTGTAGTAGAACAGAATTGAGAATTGGTGTTGTACATAGGAGCAGCATCACATCTACTAGTAGATGATAACTTGCAGGGAAGAAGATGCCCACGATGGTGATTCTGAAATGAGCATTTGTTGTTTAGAGTGATGAATTTGCTCTTGCTGGTAGCAAATGTCGCTTGGAATTATGGGATTCA ]
[-] EMBL CB660439 [ TTTGAGGCAGAGCCGATCGACGGAGAGGAGTGCCATTAGGGGCATTTTCCGCAATGGGTTTTCGTGCTTTGGTCGCAGCCATTCATTGAATTTTCAGGCCTCGTTTTTGCATTTGAGGCCGGAGTTGAACGATGGGTTTGACCGGAGCGCCGTGTTCAGCCATGGCTCAAGAAACCGGAGCCCGAGCTGGAGGCTGGAAGATGGCCATGCCGACGCCATGGGGCAAAGATAGGCCTCAACTGAAGTAAGGAAGGTCGTCGATTGTTTCCATTTCGGGCATATGTTTTTAGGGGAAAAGAAATTTGTAGTAGAACAGAATTGGGAATTGGGGTTGTACATAGGAGCAGCCTCCCATTTACTAGTAGATGATAACTTGCAGGGAAGAAGATGCCCCCGATGGTGATTTTGAAATGAGCATTTGTTGTTTAGAGGGACGAATTTGCTTTTGCGGGTAGCAAATGTCGCTTGGAATTTTAGGATTCATTCAAATTCATTGGGGGGATGATTCTTTGCATCTGGGAGAACGGAATGAATGAAACCCTTTTGAAGGGTGCAGTCTTGCAGGAT]
consensusID : consensus_9616#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 444 fasta sequence
[GGAGTGCCATTAGGNGCATCTTCCGCAATGTGNTCTCGTGCTTTGGTCGCANCCATTCATCGGAATTCTCAGGCCTNGTCTTCGCATTCGAGGCCGGAGTTGAACGATGCGTCTGACCGGAGCGCCGTGTTCAGCCATGGCTCAAAAAGCCGGAGCACGAGCTGGAGGCTCGAAGATGGCCATGCCGACGCCATGGTGCAAAGATAGGCCTCAACTNAAGTAAGGAAGGTCGTCGATTGTTTCCATTTCGCGCATATGTATTTAGAGGAAAAGAAATTTGTAGTAGAACAGAATTNAGAATTGGTGTTGTACATAGGAGCAGCATCACATCTACTAGTAGATGATAACTTGCAGGGAAGAAGATGCCCNCGATGGTGATTNTGAAATGAGCATTTGTTGTTTAGAGTGATGAATTTGCTCTTGCTGGTAAAAAAAAAAAAAAAA]
[+] EMBL AU166858 [GGAGTGCCATTAGGNGCATCTTCCGCAATGTGNTCTCGTGCTTTGGTCGCANCCATTCATCGGAATTCTCAGGCCTNGTCTTCGCATTCGAGGCCGGAGTTGAACGATGCGTCTGACCGGAGCGCCGTGTTCAGCCATGGCTCAAAAAGCCGGAGCACGAGCTGGAGGCTCGAAGATGGCCATGCCGACGCCATGGTGCAAAGATAGGCCTCAACTNAAGTAAGGAAGGTCGTCGATTGTTTCCATTTCGCGCATATGTATTTAGAGGAAAAGAAATTTGTAGTAGAACAGAATTNAGAATTGGTGTTGTACATAGGAGCAGCATCACATCTACTAGTAGATGATAACTTGCAGGGAAGAAGATGCCCNCGATGGTGATTNTGAAATGAGCATTTGTTGTTTAGAGTGATGAATTTGCTCTTGCTGGTAAAAAAAAAAAAAAAA]
consensusID : consensus_9616#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 377 fasta sequence
[ACTGGTGCCAAGTATAGGCCTCTACTGAAGTATAGGAAGGTCGTCGATTGTTTCCCTTTCGCGCATATGTATTTAGAGGAAAAGAAATTTGGTAGTAGACNCCAGTNTATTGAGAATTGGGTGTTGTNACATAGGACGCAGCATCACTATGCTACTAGTAGATGGATAACTTNCCGGGAAGAAGATGCCCCCGATGGTGATTCTGAAATGAGCCTTTGTTGGTTTAGAGTGATGAATTTGCTCTTGCTGGTACCCAATGTCGCTTGGAATTCTATGATTCATTCCAAATTCNTTGTGGCGATGATTCTTTGCATCTGTGGAGAACGGAATGAATGAAACCCNTTTGATGTTTNCAGTCTTGCCGGACTCCAATAAAA]
[+] EMBL BQ908247 [ACTGGTGCCAAGTATAGGCCTCTACTGAAGTATAGGAAGGTCGTCGATTGTTTCCCTTTCGCGCATATGTATTTAGAGGAAAAGAAATTTGGTAGTAGACNCCAGTNTATTGAGAATTGGGTGTTGTNACATAGGACGCAGCATCACTATGCTACTAGTAGATGGATAACTTNCCGGGAAGAAGATGCCCCCGATGGTGATTCTGAAATGAGCCTTTGTTGGTTTAGAGTGATGAATTTGCTCTTGCTGGTACCCAATGTCGCTTGGAATTCTATGATTCATTCCAAATTCNTTGTGGCGATGATTCTTTGCATCTGTGGAGAACGGAATGAATGAAACCCNTTTGATGTTTNCAGTCTTGCCGGACTCCAATAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9616#0 AGCGCGCCCCCGCCGCGCGCCGCCTACCTCCGCCGCCCGCGCGCGCACCACGCCAACGAC 60
consensus_9616#1 ------------------------------------------------------------
consensus_9616#2 ------------------------------------------------------------
consensus_9616#0 CTGCGCCTGCGCCGCACGCGCCGCGCCGCGGCGGCGGCGGCGGCCGGCGACCGCTCGCCG 120
consensus_9616#1 ------------------------------------------------------------
consensus_9616#2 ------------------------------------------------------------
consensus_9616#0 TTCAACCCCGTCATCGTGCTTCGCCGTTCCCCCGCCGCCGCCGGCGACGACGACTCCCTC 180
consensus_9616#1 ------------------------------------------------------------
consensus_9616#2 ------------------------------------------------------------
consensus_9616#0 GCCGCCGCCACCAGCTTCGAGCTCTTCTACGACGACGGCGCGGGCTCCGGCCTCCGCCCG 240
consensus_9616#1 ------------------------------------------------------------
consensus_9616#2 ------------------------------------------------------------
consensus_9616#0 CTCCCGGAGACCATGTTGNACTTCCTCATGGGCTCCGGCTTCGAGCGCCTCCTCGACCAG 300
consensus_9616#1 ------------------------------------------------------------
consensus_9616#2 ------------------------------------------------------------
consensus_9616#0 CTCACCCAGATCGAGGCCGGCGGCCTCGCCCGCGCCAGGGAGAACCCACCGGCCTCCAAG 360
consensus_9616#1 ------------------------------------------------------------
consensus_9616#2 ------------------------------------------------------------
consensus_9616#0 GCCTCCGTCGAGTCCATGCCCACCGTCACCATCGCCGCCTCCCACGTCGGCGCAGACTCC 420
consensus_9616#1 ------------------------------------------------------------
consensus_9616#2 ------------------------------------------------------------
consensus_9616#0 CACTGCGCCGTCTGCAAGGAGCCCTTCGAGCTCGGCGACGAGGCCAGGGAGATGCCCTGC 480
consensus_9616#1 ------------------------------------------------------------
consensus_9616#2 ------------------------------------------------------------
consensus_9616#0 AGCCACATCTACCACCAGGACTGCATCCTCCCATGGCTCGCGCTCCGCAACTCCTGCCCG 540
consensus_9616#1 ------------------------------------------------------------
consensus_9616#2 ------------------------------------------------------------
consensus_9616#0 GTCTGCCGCCACGAGATGCCCACCGACGCCGCCCGCCCGCGGCCCAGCAATGCCGGCACA 600
consensus_9616#1 ------------------------------------------------------------
consensus_9616#2 ------------------------------------------------------------
consensus_9616#0 GAGGAGGAGACGGTCGGCCTCACCATCTGGAGGCTGCCCGGAGGCGGCTTCGCCGTCGGT 660
consensus_9616#1 ------------------------------------------------------------
consensus_9616#2 ------------------------------------------------------------
consensus_9616#0 AGGTTCGCCGGAGGGAGGAGGCCCGAGGAGAGGGAGCTTCCAGTTGTGTACACCGAGATG 720
consensus_9616#1 ------------------------------------------------------------
consensus_9616#2 ------------------------------------------------------------
consensus_9616#0 GATGGAGGGTTCAACAACGGCGGCGCGCCGAGGAGGATCTCCTGGGGTTCGAGGCAGAGC 780
consensus_9616#1 ------------------------------------------------------------
consensus_9616#2 ------------------------------------------------------------
consensus_9616#0 CGATCGACGGAGAGGAGTGCCATTAGGCGCATCTTCCGCAATGTGTTCTCGTGCTTTGGT 840
consensus_9616#1 -------------GGAGTGCCATTAGGNGCATCTTCCGCAATGTGNTCTCGTGCTTTGGT 47
consensus_9616#2 ------------------------------------------------------------
consensus_9616#0 CGCAGCCATTCATCG-AATTCTCAGGCCTCGTCTTCGCATTCGAGGCCGGAGTTGAACGA 899
consensus_9616#1 CGCANCCATTCATCGGAATTCTCAGGCCTNGTCTTCGCATTCGAGGCCGGAGTTGAACGA 107
consensus_9616#2 ------------------------------------------------------------
consensus_9616#0 TGCGTCTGACCGGAGCGCCGTGTTCAGCCATGGCTCAAGAAGCCGGAGCACGAGCTGGAG 959
consensus_9616#1 TGCGTCTGACCGGAGCGCCGTGTTCAGCCATGGCTCAAAAAGCCGGAGCACGAGCTGGAG 167
consensus_9616#2 ------------------------------------------------------------
consensus_9616#0 GCTCGAAGATGGCCATGCCGACGCCATGGTGCAAAG-ATAGGCCTCAACTGAAGTA-AGG 1017
consensus_9616#1 GCTCGAAGATGGCCATGCCGACGCCATGGTGCAAAG-ATAGGCCTCAACTNAAGTA-AGG 225
consensus_9616#2 ------------------------ACTGGTGCCAAGTATAGGCCTCTACTGAAGTATAGG 36
****** *** ********* *** ***** ***
consensus_9616#0 AAGGTCGTCGATTGTTTCCATTTCGCGCATATGTATTTAGAGGAAAAGAAATTTG-TAGT 1076
consensus_9616#1 AAGGTCGTCGATTGTTTCCATTTCGCGCATATGTATTTAGAGGAAAAGAAATTTG-TAGT 284
consensus_9616#2 AAGGTCGTCGATTGTTTCCCTTTCGCGCATATGTATTTAGAGGAAAAGAAATTTGGTAGT 96
******************* *********************************** ****
consensus_9616#0 AGAACAGA----ATTGAGAATTGG-TGTTGTA-CATAGGA-GCAGCATCAC-AT-CTACT 1127
consensus_9616#1 AGAACAGA----ATTNAGAATTGG-TGTTGTA-CATAGGA-GCAGCATCAC-AT-CTACT 335
consensus_9616#2 AGACNCCAGTNTATTGAGAATTGGGTGTTGTNACATAGGACGCAGCATCACTATGCTACT 156
*** * *** ******** ****** ******* ********** ** *****
consensus_9616#0 AGTAGATG-ATAACTTGCAGGGAAGAAGATGCCCACGATGGTGATTCTGAAATGAGCATT 1186
consensus_9616#1 AGTAGATG-ATAACTTGCAGGGAAGAAGATGCCCNCGATGGTGATTNTGAAATGAGCATT 394
consensus_9616#2 AGTAGATGGATAACTTNCCGGGAAGAAGATGCCCCCGATGGTGATTCTGAAATGAGCCTT 216
******** ******* * *************** *********** ********** **
consensus_9616#0 TGTTG-TTTAGAGTGATGAATTTGCTCTTGCTGGTAGCAAATGTCGCTTGGAATTCTAGG 1245
consensus_9616#1 TGTTG-TTTAGAGTGATGAATTTGCTCTTGCTGGTAAAAAAAAAAAAAAAA--------- 444
consensus_9616#2 TGTTGGTTTAGAGTGATGAATTTGCTCTTGCTGGTACCCAATGTCGCTTGGAATTCTATG 276
***** ****************************** **
consensus_9616#0 ATTCATTCAAATTCATTGTGGCGATGATTCTTTGCATCTGTGAGAACGGAATGAATGAAA 1305
consensus_9616#1 ------------------------------------------------------------
consensus_9616#2 ATTCATTCCAAATTCNTTGTGGCGATGATTCTTTGCATCTGTGGAGAACGGAATGAATGA 336
consensus_9616#0 CCATTTTGAAGGGTGCAGTCTTGCAGGAT------------ 1334
consensus_9616#1 -----------------------------------------
consensus_9616#2 AACCCNTTTGATGTTTNCAGTCTTGCCGGACTCCAATAAAA 377
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||