cluster # 9619

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Oryza sativa
cluster # 9619 cluster # 9619 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9619#0 length = 566 sequences # 4

consensus_9619#1 length = 430 sequences # 1
consensus_9619#2 length = 363 sequences # 1

consensusID : consensus_9619#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 566
fasta sequence

                              [ACATACTACTTCGGTACTTCCCCTTTTCCACGCAACAGCAGCACCGCGCCGGAGATGATCGTGACGGAGCAGGAGCACCTGCAGCCGCGGCACCGGAGGTCTAGGAAGAGGGACCGGCCGCCGCCAACGCCGCCGTCGGGTAACATCAAGGCGGCGCCGGCGCCGCTACCCGGAGGGGGGTGGCCATGGCCACGAAGAGGAGGCGCGGGACGAAGACGTGGACAGGTTCTACGCGCTGCTCGACGAGGTCAGGGAGATGAGGGAGCCTGTGGCGGCGGAA-CGGTGATTGTGTCGCGACCAAGCGGACGAGCGTGGATGGTGGCCAGAAGAAGCAGGATCGCCA-GCA-GCTGTGGCGGCCGACATTTGTAATGGAGGACTTCGCGTTCGAGTTGAAGGGAA-GCCAAGTAGTCC-ACCGGAGAAGAAGGTGGACAGCGCGCCTAATC-TCGATCTTAGCTTGTCAATGTGATTTTTTCTTTTC-TTTTCTTTTCTTTTGTTGGGACTAGAGTACTGTATCGA-TTTTCTATCAGGAGAAAGAAATCAAGTTCATACTAAGATTTGCTTAAAAA]

[+] EMBL BI799557             [ACATACTACTTCGGTACTTCCCCTTTTCCACGCAACAGCAGCACCGCGCCGGAGATGATCGTGACGGAGCAGGAGCACCTGCAGCCGCGGCACCGGAGGTCTAGGAAGAGGGACC GCCGCCGCCAACGCCGCCGTCGGGTAACATCAAGGCGGCGCCGGCGCCGCTACCCGGAGGGGGGTGACCATGGCCACGAAGAGGAGGCGCGGGACGAAGACGTGGACAGGTTCTACGCGCTGCTCGACGAGGTCAGGGAGATGAGGGAGCCTGTGGCGGCGGAACCGGTGATTGTGTCGCGACC AGCGGACGAGCGTGGATGGTGGCCAGAAGAAGCAGGATCGCCACGCACGCTGTGGCGGCCGACATTTGTAATGGAGGACTTCGCGTTCGAGTTGAAGGGAACGCCAAGTAGTCC ACCGGAGAAGAAGGTGGACAGCGCGCCTAATC TCGATCTTAGCTTGTCAATGTGATTTTTTCTTTTC TTTTCTTTTCTTTTGTTGGGACTAGAGTACTGTATCGA TTTTCTATCAGGAGAAAGAAATCAAGTTCATACTAAGATTTGCTTAAAAA]
[+] EMBL C97842               [                   CCCCTTTTCCACGCAACAGCAGCACCGCGNCGGAGATGATCGTAACGGAGCAGGAGCACCTGCAGCCGCGGCACCGGA GTCTAGGAAGAGGGACCGGCCGCCGCCAACGCCGCCGTCGGGTAACATCAAGGCGGCGCCGNCGCC NTANCCGGAGGGGGGTGGCCATGGCCA GAAGAGGAGGCGCGGNACGAAGACGTGGACAGGTTCTACGCGCTGCTCGACGAGGTCAGGGAGATGAGGGAG CTGTGGCGNCGGAA CGGTGATTGTTTCGCGACCAAGCGGACGAGCGTGGATGGTGGCCAGAAGAAGCAGGATCGCCA GCA GCTGTGGCGGCCGACGTTTTTAATGGAGGACTTCGCGTTCGATTTGAAGGGAA GCCAAGTAGTCCAACCGGAGANGAAGGTGG CAGCGTGNCTAATCTTCGATCTTAG TTTTNAATGT                                                                                                        ]
[+] EMBL BI799563             [                                     GCAGCACCGCG CGGAGATGATCGTGACGGAGCAGGAGCACCTGCAGCCGCGGCACCGGAGGTCTAGGAAGAGGGACCGGCCGCCGCCAACGCCGCCGTCGGGTAACATCAAGGCGGCGCCGGCGCCGCTA CCGGAGGGGGGTGGCCATGGCCACGAAGAGGAGGCGCGGGACGAAGACGTGGACAGGTTCTACGCGCTGCTCGACGAGGTCAGGGAGATGAGGGAGCCTGTGGCGGCGGAA CGGTGATTGTGTCGCGACCAAGCGGACGAGCGTGGATGGTGGCCAGAAGAAGCAGGATCGCCA GCA GCTGTGGCGGCCGACATTTGTAATGGAGGACTTCGCGTTCGAGTTGAAGGGAA GCCAAGTAGTCCAACCGGAGAAGAAGGTGGACAGCGCGCCTAATC TCGATCTTAGCTTGTCAATGTGATTTTTTCTTTTC TTTTCTTTTCTTTTGTTGGGACTAGAGTACTGTATCGA TTTTCTATCAGGAGAAAGAAATCAAGTTCATACTAAGATTTGCTTAAAAA]
[+] EMBL BI797925             [                                                                                                                                                                                                                                                                                                                                                                                                                     CAAGTAGTCC ACCGGAGAAGAAGGTGGACAGCGCGCCTAATC TCGATCTTAGCTTGTCAATGTGATTTTTTCTTTTCTTTTTCTTTTCTTTTGTTGGGACTAGAGTACTGTATCGATTTTTCTATCAGGAGAAAGAAATCAAGTTCATACTAAGA TTGCT      ]




>consensus_9619#0
ACATACTACTTCGGTACTTCCCCTTTTCCACGCAACAGCAGCACCGCGCCGGAGATGATC
GTGACGGAGCAGGAGCACCTGCAGCCGCGGCACCGGAGGTCTAGGAAGAGGGACCGGCCG
CCGCCAACGCCGCCGTCGGGTAACATCAAGGCGGCGCCGGCGCCGCTACCCGGAGGGGGG
TGGCCATGGCCACGAAGAGGAGGCGCGGGACGAAGACGTGGACAGGTTCTACGCGCTGCT
CGACGAGGTCAGGGAGATGAGGGAGCCTGTGGCGGCGGAACGGTGATTGTGTCGCGACCA
AGCGGACGAGCGTGGATGGTGGCCAGAAGAAGCAGGATCGCCAGCAGCTGTGGCGGCCGA
CATTTGTAATGGAGGACTTCGCGTTCGAGTTGAAGGGAAGCCAAGTAGTCCACCGGAGAA
GAAGGTGGACAGCGCGCCTAATCTCGATCTTAGCTTGTCAATGTGATTTTTTCTTTTCTT
TTCTTTTCTTTTGTTGGGACTAGAGTACTGTATCGATTTTCTATCAGGAGAAAGAAATCA
AGTTCATACTAAGATTTGCTTAAAAA

consensusID : consensus_9619#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 430
fasta sequence

                              [CCGCCGTCGGGTAACATCAAGGCGGCGCCGGCGCCGCTACCGGAGGGGGGTGGCCATGGCCACGAAGAGGAGGCGCGGGACGAAGACGTGGACAGGTTNTACGCGCTGCTCGACGAGGTCAGGGAGATGAGGGAGCTGTGGCGGCGGAACGGTGATTGTGTCGCGACCAAGCGGACGAGCGTGGATGGTGGCCAGAAGAAGCAGGATCGCCAGCAGCTGTGGCGGCCGACGTTTGTAATGGAGGACTTCGCGTTCGAGTTGAAGGGAAGCCAAGTAGTCCAACCGGAGAAGAAGGTGGACAGCGCGCCTAATCTCGATCTTAGCTTGTCAATGTGATTTTTTTCTTTTCTTTTCTTTTCTTTTGTTGGGACTAGAGTACTGTATCGATTTTCTATCAGGAGAAAGAAATCAAGTTCATAAAAAAAAAAAA]

[+] EMBL AU172408             [CCGCCGTCGGGTAACATCAAGGCGGCGCCGGCGCCGCTACCGGAGGGGGGTGGCCATGGCCACGAAGAGGAGGCGCGGGACGAAGACGTGGACAGGTTNTACGCGCTGCTCGACGAGGTCAGGGAGATGAGGGAGCTGTGGCGGCGGAACGGTGATTGTGTCGCGACCAAGCGGACGAGCGTGGATGGTGGCCAGAAGAAGCAGGATCGCCAGCAGCTGTGGCGGCCGACGTTTGTAATGGAGGACTTCGCGTTCGAGTTGAAGGGAAGCCAAGTAGTCCAACCGGAGAAGAAGGTGGACAGCGCGCCTAATCTCGATCTTAGCTTGTCAATGTGATTTTTTTCTTTTCTTTTCTTTTCTTTTGTTGGGACTAGAGTACTGTATCGATTTTCTATCAGGAGAAAGAAATCAAGTTCATAAAAAAAAAAAA]




>consensus_9619#1
CCGCCGTCGGGTAACATCAAGGCGGCGCCGGCGCCGCTACCGGAGGGGGGTGGCCATGGC
CACGAAGAGGAGGCGCGGGACGAAGACGTGGACAGGTTNTACGCGCTGCTCGACGAGGTC
AGGGAGATGAGGGAGCTGTGGCGGCGGAACGGTGATTGTGTCGCGACCAAGCGGACGAGC
GTGGATGGTGGCCAGAAGAAGCAGGATCGCCAGCAGCTGTGGCGGCCGACGTTTGTAATG
GAGGACTTCGCGTTCGAGTTGAAGGGAAGCCAAGTAGTCCAACCGGAGAAGAAGGTGGAC
AGCGCGCCTAATCTCGATCTTAGCTTGTCAATGTGATTTTTTTCTTTTCTTTTCTTTTCT
TTTGTTGGGACTAGAGTACTGTATCGATTTTCTATCAGGAGAAAGAAATCAAGTTCATAA
AAAAAAAAAA

consensusID : consensus_9619#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 363
fasta sequence

                              [CACTCCACATACTATTTCGGGTACTTCCCCTTTTCCACGCAACAGCAGCACCGCGNCGNAGATGATCGTGACGGAGCAGGAGCACCTGCAGCCGCGGCACCGGAGTCTAGGAAGAGGGACCGGCCGCCGCCAACGCCGCCGTCGGGTAACATCAAGGCGGCGCGNCCNNATCNCAGGANGGGANGTGGCCATGGCAGTAATGAGGAGGCGCGGGACGAAGACGTGGACAGGTTCTACGCGCTGCTCGACGAGGTCAGGGAGATGAGGGAGCTGTGGCGACGGAACGGTGATTGTGTCGCGACCAAGNGACGAGCGTGGATGGTNGCCAGAAGAAGCAGGATCGCCAGCAGCTGTTGCGCCCGA]

[+] EMBL C27949               [CACTCCACATACTATTTCGGGTACTTCCCCTTTTCCACGCAACAGCAGCACCGCGNCGNAGATGATCGTGACGGAGCAGGAGCACCTGCAGCCGCGGCACCGGAGTCTAGGAAGAGGGACCGGCCGCCGCCAACGCCGCCGTCGGGTAACATCAAGGCGGCGCGNCCNNATCNCAGGANGGGANGTGGCCATGGCAGTAATGAGGAGGCGCGGGACGAAGACGTGGACAGGTTCTACGCGCTGCTCGACGAGGTCAGGGAGATGAGGGAGCTGTGGCGACGGAACGGTGATTGTGTCGCGACCAAGNGACGAGCGTGGATGGTNGCCAGAAGAAGCAGGATCGCCAGCAGCTGTTGCGCCCGA]




>consensus_9619#2
CACTCCACATACTATTTCGGGTACTTCCCCTTTTCCACGCAACAGCAGCACCGCGNCGNA
GATGATCGTGACGGAGCAGGAGCACCTGCAGCCGCGGCACCGGAGTCTAGGAAGAGGGAC
CGGCCGCCGCCAACGCCGCCGTCGGGTAACATCAAGGCGGCGCGNCCNNATCNCAGGANG
GGANGTGGCCATGGCAGTAATGAGGAGGCGCGGGACGAAGACGTGGACAGGTTCTACGCG
CTGCTCGACGAGGTCAGGGAGATGAGGGAGCTGTGGCGACGGAACGGTGATTGTGTCGCG
ACCAAGNGACGAGCGTGGATGGTNGCCAGAAGAAGCAGGATCGCCAGCAGCTGTTGCGCC
CGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9619#0      ------ACATACTACTTCGGTACTTCCCCTTTTCCACGCAACAGCAGCACCGCGCCGGAG 54
consensus_9619#1      ------------------------------------------------------------
consensus_9619#2      CACTCCACATACTATTTCGGGTACTTCCCCTTTTCCACGCAACAGCAGCACCGCGNCGNA 60
                                                                                  

consensus_9619#0      ATGATCGTGACGGAGCAGGAGCACCTGCAGCCGCGGCACCGGAGGTCTAGGAAGAGGGAC 114
consensus_9619#1      ------------------------------------------------------------
consensus_9619#2      GATGATCGTGACGGAGCAGGAGCACCTGCAGCCGCGGCACCGGAGTCTAGGAAGAGGGAC 120
                                                                                  

consensus_9619#0      CGGCCGCCGCCAACGCCGCCGTCGGGTAACATCAAGGCGGCGCCGGCGCCGCTACCCGGA 174
consensus_9619#1      ---------------CCGCCGTCGGGTAACATCAAGGCGGCGCCGGCGCCGCTACC-GGA 44
consensus_9619#2      CGGCCGCCGCCAACGCCGCCGTCGGGTAACATCAAGGCGGCGC-GNCCNNATCNCAGGAN 179
                                     **************************** * *       *  *  

consensus_9619#0      GGGGGGTGGCCATGGCCACGAAGAGGAGGCGCGGGACGAAGACGTGGACAGGTTCTACGC 234
consensus_9619#1      GGGGGGTGGCCATGGCCACGAAGAGGAGGCGCGGGACGAAGACGTGGACAGGTTNTACGC 104
consensus_9619#2      GGGANGTGGCCATGGCAGTAATGAGGAGGCGCGGGACGAAGACGTGGACAGGTTCTACGC 239
                      ***  ***********    * ******************************** *****

consensus_9619#0      GCTGCTCGACGAGGTCAGGGAGATGAGGGAGCCTGTGGCGGCGGAACGGTGATTGTGTCG 294
consensus_9619#1      GCTGCTCGACGAGGTCAGGGAGATGAGGGAGC-TGTGGCGGCGGAACGGTGATTGTGTCG 163
consensus_9619#2      GCTGCTCGACGAGGTCAGGGAGATGAGGGAGC-TGTGGCGACGGAACGGTGATTGTGTCG 298
                      ******************************** ******* *******************

consensus_9619#0      CGACCAAGCGGACGAGCGTGGATGGTGGCCAGAAGAAGCAGGATCGCCAGCAGCTGTGGC 354
consensus_9619#1      CGACCAAGCGGACGAGCGTGGATGGTGGCCAGAAGAAGCAGGATCGCCAGCAGCTGTGGC 223
consensus_9619#2      CGACCAAGNG-ACGAGCGTGGATGGTNGCCAGAAGAAGCAGGATCGCCAGCAGCTGTTGC 357
                      ******** * *************** ****************************** **

consensus_9619#0      GGCCGACATTTGTAATGGAGGACTTCGCGTTCGAGTTGAAGGGAAGCCAAGTAGTCCA-C 413
consensus_9619#1      GGCCGACGTTTGTAATGGAGGACTTCGCGTTCGAGTTGAAGGGAAGCCAAGTAGTCCAAC 283
consensus_9619#2      GCCCGA------------------------------------------------------ 363
                      * ****                                                      

consensus_9619#0      CGGAGAAGAAGGTGGACAGCGCGCCTAATCTCGATCTTAGCTTGTCAATGTGATTTTTT- 472
consensus_9619#1      CGGAGAAGAAGGTGGACAGCGCGCCTAATCTCGATCTTAGCTTGTCAATGTGATTTTTTT 343
consensus_9619#2      ------------------------------------------------------------
                                                                                  

consensus_9619#0      CTTTTCTTTTCTTTTCTTTTGTTGGGACTAGAGTACTGTATCGATTTTCTATCAGGAGAA 532
consensus_9619#1      CTTTTCTTTTCTTTTCTTTTGTTGGGACTAGAGTACTGTATCGATTTTCTATCAGGAGAA 403
consensus_9619#2      ------------------------------------------------------------
                                                                                  

consensus_9619#0      AGAAATCAAGTTCATACTAAGATTTGCTTAAAAA 566
consensus_9619#1      AGAAATCAAGTTCATAAAAAAA-------AAAAA 430
consensus_9619#2      ----------------------------------