These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9622#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 981 fasta sequence [TCGCAGCAGGAGGCCGCCGCCGTCCCGACGCCCAAGAGCCGGAGCAAGAACGGTGGCGGCCGGAGCGGCGGCGGCGGCGGGGAGGACCCGCGGAGGTCGGATTATTACCTCAACCTTGGGACGGCGGTGCGCACGCTGCGGGACGACCTGCCGGCGGTGTTCGTCCGGGAACCCAACTACGACATCTACCGTGAAGATATAACATTCGTCGATCCGTTGAACACTTTCCATGGAATCGACAACTACAAGACAATCTTCTGGGCTCT-CAGATTCCA-TGGGCGCCTACTCTTCC-GT-GAAA--TCGGG-CTTGACAT-ATCACGCATTTGGCA-ACT-GACAGAGAACTCGATAGTTGTCCGGTGGG-AGCTGTGGGGAACCCCG-CGTGTCCCGTGGGAATCATACGGTTGCTTCAGTGGCACCTCGAGATACAAGGTCGACAGGAACGGGAAGATTTACGAGCACA-AAGTCGATAATTTGGCACTGGACTTTCCCCGCCCAGCAGCCAAAGTGGGCAGCATTGCTGACATTGTCGTCGCCTCATGCCC-ACCAAGCCCCA-ATTTGACGTTCTGGGACATGGTTGGGAGTACTGGTGATGGGTGCTCATGGGC-AAATCTCTACCAGGCGGTGGTGGAAACCGTGGAGC-GGGAAGGCAATGATCCTGCTGGCATTGCCATTGAAGGTCTGCTTACTTGTTCATAGGATGGAATGAGCTTCAGGGCTAGCTGCTTGGTA-GTGAGCTTTCTTAGGGAAGATGTATAGAAGGTGGATACATAAATCATAATGCTATTAATCTTGGTACACTGTAGCTCTAGAATAACA-ATTTTAGATACAATACATGGTAGATAACTATGTCTC-AGAATCTTTGCTACGCATTCTAGAATGTATCTACCAGTCTCTTAAGTCTCAAAAGTTAATGGCTATTCTTAGCAGGTCTTTCAATATCCTAAATTATGAAAATGAAGGTTGCCAAAAAAAAAAAAAAAAAAA] [+] EMBL AK065653 [TCGCAGCAGGAGGCCGCCGCCGTCCCGACGCCCAAGAGCCGGAGCAAGAACGGTGGCGGCCGGAGCGGCGGCGGCGGCGGGGAGGACCCGCGGAGGTCGGATTATTACCTCAACCTTGGGACGGCGGTGCGCACGCTGCGGGACGACCTGCCGGCGGTGTTCGTCCGGGAACCCAACTACGACATCTACCGTGAAGATATAACATTCGTCGATCCGTTGAACACTTTCCATGGAATCGACAACTACAAGACAATCTTCTGGGCTCT CAGATTCCA TGGGCGCCTACTCTTCC GT GAAA TCGGG CTTGACAT ATCACGCATTTGGCA ACT GACAGAGAACTCGATAGTTGTCCGGTGGG AGCTGTGGGGAACCCCG CGTGTCCCGTGGGAATCATACGGTTGCTTCAGTGGCACCTCGAGATACAAGGTCGACAGGAACGGGAAGATTTACGAGCACA AAGTCGATAATTTGGCACTGGACTTTCCCCGGCCAGCAGCCAAAGTAGGCAGCATTGCTGACATTGTCGTCGCCTCATGCCC ACCAAGCCCCA ATTTGACGTTCTGGGACATGGTTGGGAGTACTGGTGATGGGTGCTCATGGGC AAATCTCTACCAGGCGGTGGTGGAAACCGTGGAGC GGGAAGGCAATGATCCTGCTGGCATTGCCATTGAAGGTCTGCTTACTTGTTCATAGGATGGAATGAGCTTCAGGGCTAGCTGCTTGGTA GTGAGCTTTCTTAGGGAAGATGTATAGAAGGTGGATACATAAATCATAATGCTATTAATCTTGGTACACTGTAGCTCTAGAATAACA ATTTTAGATACAATACATGGTAGATAACTATGTCTC AGAATCTTTGCTACGCATTCTAGAATGTATCTACCAGTCTCTTAAGTCTCAAAAGTTAATGGCTATTCTTAGCAGGTCTT ] [+] EMBL BM419117 [ TGGGCTCTACAGATTCCACTGGGCG CTACTCTTCCGGTAGAAAGTTCGGGCCTGGACATNGTCACGCATTTGGCAGCCTGGACAGAGTACTCGATAGTTGTCCGGTGGGTACCTTTGGGGAACCCCGTCGTGTCCCGTGGGAATCATATGGTTGCTTCAGTGGCACCTCGAGATACAAGGTCGACAGGAACGGGAAGATTTACGAGCACA AAGTCGATAATTTGGCACTGGACTTTCCCCGCCCAGCAGCCTAAGTGGGCAGCATTGCTGACATTGTCGTCGCCACATGCCC ACCAAGCCCCA ATTTGACGTTCTGGGACATGGTTGGGAGTACTGGTGATGGGTGCTCATGGGC AAATCTCTACCA GCGGTGGTGGAAACCGTGGAGC AGGAAGGCAATGATCCTGCTGGCATTGCCATTGAAGGTCTGCTTACTTGTTCATAGGATGGAATGAGCTTCCGGGCTAGCTGCTTGGTATGTGGGCTTTCTTAGGGAAGATGTATAGAAGGTGGATACATAAATCATAATGCTATTAATCTTCGTATACTGTAGCTCTAGAATAACA ATTTTAGATACAATACATGGTAGATAACTATGTCTC AAAATCTTCGCCACGCAaaaaaaaaa ] [-] EMBL CA762036 [ TCGGG CCTGACAT ATCCCGCATTTGGCA ACT GACAGAGAACTCGATAGTTGTCCGGTGGG AGCTGTGGGGAACCCCG CGTGTCCCGTGGGAATCATATGGTTGCTTCAGTGGCACCTCGAGATACAAGGTCGACAGGAACGGGAAGATTTACGAGCACA AAGTCGATAATTTGGCACTGGACTTTCCCCGCCCAGCAGCCAAAGTGGGCAGCATTGCTGACATTGTTGTCGCCACATGCCC ACCAAGCCCCA ATTTGACGTTTTGGGACATGGTTGGGAGTACTGGTGATGGGTGCTCATGGGC AAATCTCTACCAGGCGGTGGTGGAAACCGTGGAGC AGGAAGGCAATGATCCTGCTGGCATTGCCATTGAAGGTCTGCTTACTTGTTCATAGGATGGAATGAGCTTCAGGGCTAGCTGCTTGGTA GTGGGCTTTTTTAGGGAAGATGTATAGAAGGTGGATACATAAATCATAATGCTATTAATCTTCGTATACTGTAGCTCTAGAATAACA ATTTTAGATACAATACATGGTAGATAACTATGTCTC AAAATTTTCGCCACGCATTTTGGAATGTTACTACCAGTCTCTTATGTCTCAAAAGTTAATGGCTATTCTTAGTAGGTCTTTCAATATCCTAAATTATGAAAATGAAGGTTGCCAAAAAAAAAAAAAAAAAAA] [-] EMBL CF304714 [ GGG CTTGACAT ATCACGCATTTGGCA ACT GACAGAGAACTCGATAGTTGTCCGGTGGG AGCTGTGGGGAACNCCG CGTGTCCCGTGGGAATCATACGGTTGCTTCAGTGGCACCTCGAGATACAAGGTCGACAGGAACGGGAAGATTTACGAGCACA AAGTCGATAATTTGGCACTGGACTTTCCCCGGCCAGCAGCCAAAGTAGGCAGCATTGCTGACATTGTCGTCGCCTCATGCCC ACCAAGCCCCA ATTTGACGTTCTGGGACATGGTTGGGAGTACTGGTGATGGGTGCTCATGGGC AAATCTCTACCAGGCGGTGGTGGAAACCGTGGAGC GGGAAGGCAATGATCCTGCTGGCATTGCCATTGAAGGTCTGCTTACTTGTTCATAGGATGGAATGAGCTTCAGGGCTAGCTGCTTGGTA GTGAGCTTTCTTAGGGAAGATGTATAGAAGGTGGATACATAAATCATAATGCTATTAATCTTGGTACACTGTAGCTCTAGAATAACA ATTTTAGATACAATACATGGTAGATAACTATGTCTC AGAATCTTTGCTACGCAaaaaaaaa ] [+] EMBL BI813363 [ TCATA TGTTGCTTCAGT GCACCTCGAGATACAAGGTCGACAGGAACGGGAAGATTTACGAGCACACAAGTCGATAATTTGGCACTGGACTTTCCCCGCCCAGCAGCCCAAGTGGGCAGCATTGCTGACATTGTCGTCGCCACATGCCCAACCAAGCCCCACATTTGACGTTCTGGGACATGGTTGGGAGTACTGGTGATGGGTGCTCATGGGCAAAATCTCTACCAGGCGGTGGTGGAAACCGTGGAGCACGGAAGGCCATGATCCTGCTGGCATTGCCCTTGAAGGTCTGCTTACTTGTTCATAGGATGGAATGAGCTTCAGGGCTAGCTGCTTGGTA GTGGGCTTTCTTAGGGAAGATGTATAGAAGGTGGATACATAAATCATAATGCTATTAATCTTCGTATACTGTAGCTCTAGAATAACACATTTTAGATACAATACATGGTAGATAACTATGTCTCAAAAATCTTCGCCACGCATTTTGGAATGTTACTACCAGTCTCTTATGTCTCCAAAaaaaaa ] [+] EMBL AU172619 [ nGTCGCCTCATGCCC NCCAAGCCCCA ATTTGACGTTCTGGGACATGGTTGGGAGTACTGGTGATGGGTGCTCATGGGC AAATCTCTACCAGGCGGTGGTGGAAACCGTGGAGC GGGAAGGCAATGATCCTGCTGGCATTGCCATTGAAGGTCTGCTTACTTGTTCATAGGATGGAATGAGCTTCAGGGCTAGCTGCTTGGTA GTGAGCTTTCTTAGGGAAGATGTATAGAAGGTGGATACATAAATCATAATGCTATTAATCTTGGNACACTGTAGCTCTAGAATAACA ATTTTAGATACAATACATGGTAGATAACTATGTCTC AGAATCTTTGCTACGCATTCTAGAATGTATCTACCAGTCTCTTAAGTCTCAAAAGTTAATGGCTATTCTTAGCAGGTCTTTCAATATCCTAAATTATGAAAATGAAGGTTGCCAAAAAAAAAAAAAAA ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||