These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9624#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2094 fasta sequence [GAAGAGCGTGGGCATGGACAACTGACCTGAGTGGCCTTGTCAGGGAGAGCCATAGCAGTGGACGTGTCTATCTCCGCCATTGCTTCGTCGACACTGGACGTGCAGACGGCATGGCCATGAGGGCTTTGCACGATGGGTGGTGCCGTGTTGGTGTTATGGGCTGCCACCATGGTTTGAGGCTTTTGATGTTGCTAGATTTTGTGTTTAACGAGGGAGGGAAGAATGTGTTGTTCTTGACACTGTGCTGTGCTTTTAAGGAGCAGAGATTTCAGAAGCTCTTCAGATATCAGAGAACTTCTTTGTAGTAGTAATCAAATGCGCTTTAGACATCTTTTTATCGTTTCTTGCAAGGTCAGTCCCTGCTTTGGTACCCGATCTCGCTTTTGTGCAACATCAAAGTTACACTTACACAGTAAAGCAGGAATCTTTATGGGACCGTTCGTACTGGTCAATTACTCCAGGCTTTGATTAATGGGTTTTAAGTTTTAACCGCAGATTTGGTACAAGTAACAACCTTTATTTACTTTTTATTTCTGCAACTGTGTCTTTTAACATGAAAGAATCCAGCTCCATTCAAAAGTTTAGTTTTTATTTTCCATTGTGGTGCATGGTCACTCAGCCTGCAGTACTGAATTATCAAAATTTTCTTTTGTCATTTCTCTCATGTTAAGTGCATAGTCTATTTTACTTCAACAGGTAGAAAAACTTTTGTGGGTTTGTTTCTAGCTCAAGGAGGAAATTCATGGGTTTGCATCTAGCACATGAGAGAACAATATTGGTCTAACACAAAGCTCCTTTTGTAGGATGAGCTTCACTTCCTTGAAGGAGCTCAGCCCGTTTCTCGTTCTGGATGCATTAAAGAGATAAATGAGTTTGTTGGTACAAAACATGACCCACTAATACCAACAAAGAGAAGGAGGCACAGATCTTGCCGTCTTTTTCGGTGGATCGGATCAAAATTGTGTATCTGCATTTCATGTCTTTGCTACTGTTGCAAGTGCTCACCCAAGTGCAAAAGACCAAGGTGCCTCAATTGTTCTTGCAGCTCATGCTGCGACGAGCCATGCTGTAAGCCAAACTGCAGTGCGTGCTGCGCTGGGTCATGCTGTAGTCCAGACTGCTGCTCATGCTGTAAACCTAACTGCAGTTGCTGCAAGACCCCTTCTTGCTGCAAACCGAACTGCTCGTGCTCCTGTCCAAGCTGCAGCTCATGCTGCGATACATCGTGCTGCAAACCGAGCTGCACCTGCTTCAACATCTTTTCATGCTTCAAATCCCTGTACAGCTGCTTCAAGATCCCTTCATGCTTCAAGTCCCAGTGCAACTGCTCTAGCCCCAATTGCTGCACTTGCACCCTTCCAAGCTGTAGCTGCAAGGGCTGTGCCTGTCCAAGCTGTGGATGCAACGGCTGTGGCTGTCCAAGCTGCGGATGCAACGGTTGTGGCTGTCCAAGCTGCGGTTGCAACGGCTGTGGCCTTCCAAGCTGCGGTTGCAACGGCTGCGGCTCGTGCTCTTGCGCCCAATGCAAACCCGATTGTGGCTCGTGCTCTACCAATTGCTGTAGCTGCAAGCCAAGCTGCAACGGCTGCTGCGGCGAGCAGTGCTGCCGCTGCGCGGACTGCTTCTCCTGCTCGTGCCCTCGTTGCTCCAGCTGCTTCAACATCTTCAAATGCTCCTGCGCTGGCTGCTGCTCGAGCCTGTGCAAGTGCCCCTGCACGACGCAGTGCTTCAGCTGCCAGTCGTCATGCTGCAAGCGGCAGCCTTCGTGCTGCAAGTGCCAGTCGTCTTGCTGCGAGGGGCAGCCTTCCTGCTGCGAGGGACACTGCTGCAGCCTCCCGAAACCGTCGTGCCCTGAATGTTCCTGTGGGTGTGTCTGGTCTTGCAAGAATTGTACAGAGGGTTGTCGATGCCCACGGTGTCGTAACCCATGCTGTCTCAGTGGTTGCTTATGTTGATCTAGATCCTTTTTTGGTTGTTGTTTTTCTTGTATTTTTTAGTTGTTAGGCCTTTGATTAAGTTCGAACTTTCATAAATATATGGTGTTTATCCTGTAAAGAAATGATGATTTCAAGGATTTTTCATAGCTATGAGACG] [+] EMBL AK102904 [GAAGAGCGTGGGCATGGACAACTGACCTGAGTGGCCTTGTCAGGGAGAGCCATAGCAGTGGACGTGTCTATCTCCGCCATTGCTTCGTCGACACTGGACGTGCAGACGGCATGGCCATGAGGGCTTTGCACGATGGGTGGTGCCGTGTTGGTGTTATGGGCTGCCACCATGGTTTGAGGCTTTTGATGTTGCTAGATTTTGTGTTTAACGAGGGAGGGAAGAATGTGTTGTTCTTGACACTGTGCTGTGCTTTTAAGGAGCAGAGATTTCAGAAGCTCTTCAGATATCAGAGAACTTCTTTGTAGTAGTAATCAAATGCGCTTTAGACATCTTTTTATCGTTTCTTGCAAGGTCAGTCCCTGCTTTGGTACCCGATCTCGCTTTTGTGCAACATCAAAGTTACACTTACACAGTAAAGCAGGAATCTTTATGGGACCGTTCGTACTGGTCAATTACTCCAGGCTTTGATTAATGGGTTTTAAGTTTTAACCGCAGATTTGGTACAAGTAACAACCTTTATTTACTTTTTATTTCTGCAACTGTGTCTTTTAACATGAAAGAATCCAGCTCCATTCAAAAGTTTAGTTTTTATTTTCCATTGTGGTGCATGGTCACTCAGCCTGCAGTACTGAATTATCAAAATTTTCTTTTGTCATTTCTCTCATGTTAAGTGCATAGTCTATTTTACTTCAACAGGTAGAAAAACTTTTGTGGGTTTGTTTCTAGCTCAAGGAGGAAATTCATGGGTTTGCATCTAGCACATGAGAGAACAATATTGGTCTAACACAAAGCTCCTTTTGTAGGATGAGCTTCACTTCCTTGAAGGAGCTCAGCCCGTTTCTCGTTCTGGATGCATTAAAGAGATAAATGAGTTTGTTGGTACAAAACATGACCCACTAATACCAACAAAGAGAAGGAGGCACAGATCTTGCCGTCTTTTTCGGTGGATCGGATCAAAATTGTGTATCTGCATTTCATGTCTTTGCTACTGTTGCAAGTGCTCACCCAAGTGCAAAAGACCAAGGTGCCTCAATTGTTCTTGCAGCTCATGCTGCGACGAGCCATGCTGTAAGCCAAACTGCAGTGCGTGCTGCGCTGGGTCATGCTGTAGTCCAGACTGCTGCTCATGCTGTAAACCTAACTGCAGTTGCTGCAAGACCCCTTCTTGCTGCAAACCGAACTGCTCGTGCTCCTGTCCAAGCTGCAGCTCATGCTGCGATACATCGTGCTGCAAACCGAGCTGCACCTGCTTCAACATCTTTTCATGCTTCAAATCCCTGTACAGCTGCTTCAAGATCCCTTCATGCTTCAAGTCCCAGTGCAACTGCTCTAGCCCCAATTGCTGCACTTGCACCCTTCCAAGCTGTAGCTGCAAGGGCTGTGCCTGTCCAAGCTGTGGATGCAACGGCTGTGGCTGTCCAAGCTGCGGATGCAACGGTTGTGGCTGTCCAAGCTGCGGTTGCAACGGCTGTGGCCTTCCAAGCTGCGGTTGCAACGGCTGCGGCTCGTGCTCTTGCGCCCAATGCAAACCCGATTGTGGCTCGTGCTCTACCAATTGCTGTAGCTGCAAGCCAAGCTGCAACGGCTGCTGCGGCGAGCAGTGCTGCCGCTGCGCGGACTGCTTCTCCTGCTCGTGCCCTCGTTGCTCCAGCTGCTTCAACATCTTCAAATGCTCCTGCGCTGGCTGCTGCTCGAGCCTGTGCAAGTGCCCCTGCACGACGCAGTGCTTCAGCTGCCAGTCGTCATGCTGCAAGCGGCAGCCTTCGTGCTGCAAGTGCCAGTCGTCTTGCTGCGAGGGGCAGCCTTCCTGCTGCGAGGGACACTGCTGCAGCCTCCCGAAACCGTCGTGCCCTGAATGTTCCTGTGGGTGTGTCTGGTCTTGCAAGAATTGTACAGAGGGTTGTCGATGCCCACGGTGTCGTAACCCATGCTGTCTCAGTGGTTGCTTATGTTGATCTAGATCCTTTTTTGGTTGTTGTTTTTCTTGTATTTTTTAGTTGTTAGGCCTTTGATTAAGTTCGAACTTTCATAAATATATGGTGTTTATCCTGTAAAGAAATGATGATTTCAAGGATTTTTCATAGCTATGAGACG] consensusID : consensus_9624#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1816 fasta sequence [CTCTCTCTCTTTCTCTCTCCAAACCCCACGCACGCCGCGTCGCCGCCTCCTCCTCTCCATCTCCGCTGCTATTATTGCCCGCGCAGACGCAGGCCACCATCCTTCCTCTCGCTCACGCTCGCTGCTATATGGGGGTCCTCCTCATCGCATCGCATCGCATCACCTCGCACGGGCGCGCGCGCCGTGCCGTGCCGCTAGCTCGATCCGCCTCGTACGCCAGCTCGCTCGCTCGCTCCCCCACCCCGCTGCTGCACGGCTGCGCCCGCGCTGTCCCCTGTCCCCCCGCTCGCCGCGGCGATTTATACCCACCACGCCCCCTGCTGCTGCTATAATGCCCATGAGTGAAGGCGGCGAGGGGTGGTTCTGAGTTGGCCGTTGGCGTGCTGCGTGTGGAGATGGGGGAGGAGGCGGTGGTGATGGAGGCGCCGAGGCCCAAGTCGCCGCCGAGGTACCCGGACCTGTGCGGCCGGCGGCGGATGCAGCTGGAGGTGCAGATCCTGAGCCGCGAGATCACGTTCCTCAAGGATGAGCTTCACTTCCTTGAAGGAGCTCAGCCCGTTTCTCGTTCTGGATGCATTAAAGAGATAAATGAGTTTGTTGGTACAAAACATGACCCACTAATACCAACAAAGAGAAGGAGGCACAGATCTTGCCGTCTTTTTCGGTGGATCGGATCAAAATTGTGTATCTGCATTTCATGTCTTTGCTACTGTTGCAAGTGCTCACCCAAGTGCAAAAGACCAAGGTGCCTCAATTGTTCTTGCAGCTCATGCTGCGACGAGCCGTGCTGTAAGCCAAACTGCAGTGCGTGCTGCGCTGGGTCATGCTGTAGTCCAGACTGCTGCTCATGCTGTAAACCTAACTGCAGTTGCTGCAAGACCCCTTCTTGCTGCAAACCGAACTGCTCGTGCTCCTGTCCAAGCTGCAGCTCATGCTGCGATACATCGTGCTGCAAACCGAGCTGCACCTGCTTCAACATCTTTTCATGCTTCAAATCCCTGTACAGCTGCTTCAAGATCCCTTCATGCTTCAAGTCCCAGTGCAACTGCTCTAGCCCCAATTGCTGCACTTGCACCCTTCCAAGCTGTAGCTGCAAGGGCTGTGCCTGTCCAAGCTGTGGATGCAACGGCTGTGGCTGTCCAAGCTGCGGATGCAACGGTTGTGGCTGTCCAAGCTGCGGTTGCAACGGCTGTGGCCTTCCAAGCTGCGGTTGCAACGGCTGCGGCTCGTGCTCTTGCGCCCAATGCAAACCCGATTGTGGCTCGTGCTCTACCAATTGCTGTAGCTGCAAGCCAAGCTGCAACGGCTGCTGCGGCGAGCAGTGCTGCCGCTGCGCGGACTGCTTCTCCTGCTCGTGCCCTCGTTGCTCCAGCTGCTTCAACATCTTCAAATGCTCCTGCGCTGGCTGCTGCTCGAGCCTGTGCAAGTGCCCCTGCACGACGCAGTGCTTCAGCTGCCAGTCGTCATGCTGCAAGCGGCAGCCTTCGTGCTGCAAGTGCCAGTCGTCTTGCTGCGAGGGGCAGCCTTCCTGCTGCGAGGGACACTGCTGCAGCCTCCCGAAACCGTCGTGCCCTGAATGTTCCTGTGGGTGTGTCTGGTCTTGCAAGAATTGTACAGAGGGTTGTCGATGCCCACGGTGTCGTAACCCATGCTGTCTCAGTGGTTGCTTATGTTGATCTAGATCCTTTTTTGGTTGTTGTTTTTCTTGTATTTTTTAGTTGTTAGGCCTTTGATTAAGTTCGAACTTTCATAAATATATGGTGTTTATCCTGTAAAGAAATGATGATTTCAAGGATTTTTCATAGCTATGAGACGA] [+] EMBL AK101247 [CTCTCTCTCTTTCTCTCTCCAAACCCCACGCACGCCGCGTCGCCGCCTCCTCCTCTCCATCTCCGCTGCTATTATTGCCCGCGCAGACGCAGGCCACCATCCTTCCTCTCGCTCACGCTCGCTGCTATATGGGGGTCCTCCTCATCGCATCGCATCGCATCACCTCGCACGGGCGCGCGCGCCGTGCCGTGCCGCTAGCTCGATCCGCCTCGTACGCCAGCTCGCTCGCTCGCTCCCCCACCCCGCTGCTGCACGGCTGCGCCCGCGCTGTCCCCTGTCCCCCCGCTCGCCGCGGCGATTTATACCCACCACGCCCCCTGCTGCTGCTATAATGCCCATGAGTGAAGGCGGCGAGGGGTGGTTCTGAGTTGGCCGTTGGCGTGCTGCGTGTGGAGATGGGGGAGGAGGCGGTGGTGATGGAGGCGCCGAGGCCCAAGTCGCCGCCGAGGTACCCGGACCTGTGCGGCCGGCGGCGGATGCAGCTGGAGGTGCAGATCCTGAGCCGCGAGATCACGTTCCTCAAGGATGAGCTTCACTTCCTTGAAGGAGCTCAGCCCGTTTCTCGTTCTGGATGCATTAAAGAGATAAATGAGTTTGTTGGTACAAAACATGACCCACTAATACCAACAAAGAGAAGGAGGCACAGATCTTGCCGTCTTTTTCGGTGGATCGGATCAAAATTGTGTATCTGCATTTCATGTCTTTGCTACTGTTGCAAGTGCTCACCCAAGTGCAAAAGACCAAGGTGCCTCAATTGTTCTTGCAGCTCATGCTGCGACGAGCCGTGCTGTAAGCCAAACTGCAGTGCGTGCTGCGCTGGGTCATGCTGTAGTCCAGACTGCTGCTCATGCTGTAAACCTAACTGCAGTTGCTGCAAGACCCCTTCTTGCTGCAAACCGAACTGCTCGTGCTCCTGTCCAAGCTGCAGCTCATGCTGCGATACATCGTGCTGCAAACCGAGCTGCACCTGCTTCAACATCTTTTCATGCTTCAAATCCCTGTACAGCTGCTTCAAGATCCCTTCATGCTTCAAGTCCCAGTGCAACTGCTCTAGCCCCAATTGCTGCACTTGCACCCTTCCAAGCTGTAGCTGCAAGGGCTGTGCCTGTCCAAGCTGTGGATGCAACGGCTGTGGCTGTCCAAGCTGCGGATGCAACGGTTGTGGCTGTCCAAGCTGCGGTTGCAACGGCTGTGGCCTTCCAAGCTGCGGTTGCAACGGCTGCGGCTCGTGCTCTTGCGCCCAATGCAAACCCGATTGTGGCTCGTGCTCTACCAATTGCTGTAGCTGCAAGCCAAGCTGCAACGGCTGCTGCGGCGAGCAGTGCTGCCGCTGCGCGGACTGCTTCTCCTGCTCGTGCCCTCGTTGCTCCAGCTGCTTCAACATCTTCAAATGCTCCTGCGCTGGCTGCTGCTCGAGCCTGTGCAAGTGCCCCTGCACGACGCAGTGCTTCAGCTGCCAGTCGTCATGCTGCAAGCGGCAGCCTTCGTGCTGCAAGTGCCAGTCGTCTTGCTGCGAGGGGCAGCCTTCCTGCTGCGAGGGACACTGCTGCAGCCTCCCGAAACCGTCGTGCCCTGAATGTTCCTGTGGGTGTGTCTGGTCTTGCAAGAATTGTACAGAGGGTTGTCGATGCCCACGGTGTCGTAACCCATGCTGTCTCAGTGGTTGCTTATGTTGATCTAGATCCTTTTTTGGTTGTTGTTTTTCTTGTATTTTTTAGTTGTTAGGCCTTTGATTAAGTTCGAACTTTCATAAATATATGGTGTTTATCCTGTAAAGAAATGATGATTTCAAGGATTTTTCATAGCTATGAGACGA] [+] EMBL C74347 [ GCTTCAAATCCCTGTACAGCTGCTTCAAGATCCCTTCATGCTTCAAGTCCCAGTGCAACTGCTCTAGCCCCAATTGCTGCACTTGCACCCTTCCAAGCTGTAGCTGCAAGGGCTGTGCCTGTCCAAGCTGTGGATGCAACGGCTGTGGCTGTCCAAGCTGCGGATGCAACGGTTGTNGCTGTCCAAGCTGCGGTTGCAACGGCTGTAGCCTTCCAAGCTGCGGTTGCAACGGCTGCNGCTCGTGCTCATGCGCNCAATGCAAACCCGATTGTGGCTCGTGCTCNACCAATTGCTGTAGCTGCAANCAAAGCTGCAACGGCTGCTGCNGCGAGCAGTTCTGCCGCTGCG ] [+] EMBL AU172798 [ CGTTGCTCCAGCTGCTTCAACATCTTCAAATGCTCCTGCGCTGGCTGCTGCTCGAGCCTGTGCAAGTGCCCCTGCACGACGCAGTGCTTCAGCTGCCAGTCGTCATGCTGCAAGCGGCAGCCTTCGTGCTGCAAGTGCCAGTCGTCTTGCTGCGAGGGGCAGCCTTCCTGCTGCGAGGGACACTGCTGCAGCCTCCCGAAACCGTCGTGCCCTGAATGTTCCTGTGGGTGTGTCTGGTCTTGCAAGAATTGTACAGAGGGTTGTCGATGCCCACGGTGTCGTAACCCATGCTGTCTCAGTGGTTGCTTATGTTGATCTAGATCCTTTTTTGGNTGTTGTTTTTCTTGTATTTTTTAGTTGTTAGGCCTTTGATTAAGTTCGAACTTTCATAAATATATGGTGTTTATCCTGTAAAGAAAaaa ] consensusID : consensus_9624#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1507 fasta sequence [GAGTGAAGGCGGCGAGGGGTGGTTCTGAGTTGGCCGTTGGCGTGCTGCGTGTGGAGATGGGGGAGGAGGCGGTGGTGATGGAGGCGCCGAGGCCCAAGTCGCCGCCGAGGTACCCGGACCTGTGCGGCCGGCGGCGGATGCAGCTGGAGGTGCAGATCCTGAGCCGCGAGATCACGTTCCTCAAGGATGAGCTTCACTTCCTTGAAGGAGCTCAGCCCGTTTCTCGTTCTGGATGCATTAAAGAGTTGCTAATGTCCTCTTACATTACTTGTCAGGATAAATGAGTTTGTTGGTACAAAACATGACCCACTAATACCAACAAAGAGAAGGAGGCACAGATCTTGCCGTCTTTTTCGGTGGATCGGATCAAAATTGTGTATCTGCATTTCATGTCTTTGCTACTGTTGCAAGTGCTCACCCAAGTGCAAAAGACCAAGGTGCCTCAATTGTTCTTGCAGCTCATGCTGCGACGAGCCATGCTGTAAGCCAAACTGCAGTGCGTGCTGCGCTGGGTCATGCTGTAGTCCAGACTGCTGCTCATGCTGTAAACCTAACTGCAGTTGCTGCAAGACCCCTTCTTGCTGCAAACCGAACTGCTCGTGCTCCTGTCCAAGCTGCAGCTCATGCTGCGATACATCGTGCTGCAAACCGAGCTGCACCTGCTTCAACATCTTTTCATGCTTCAAATCCCTGTACAGCTGCTTCAAGATCCCTTCATGCTTCAAGTCCCAGTGCAACTGCTCTAGCCCCAATTGCTGCACTTGCACCCTTCCAAGCTGTAGCTGCAAGGGCTGTGCCTGTCCAAGCTGTGGATGCAACGGCTGTGGCTGTCCAAGCTGCGGATGCAACGGTTGTGGCTGTCCAAGCTGCGGTTGCAACGGCTGTGGCCTTCCAAGCTGCGGTTGCAACGGCTGCGGCTCGTGCTCTTGCGCCCAATGCAAACCCGATTGTGGCTCGTGCTCTACCAATTGCTGTAGCTGCAAGCCAAGCTGCAACGGCTGCTGCGGCGAGCAGTGCTGCCGCTGCGCGGACTGCTTCTCCTGCTCGTGCCCTCGTTGCTCCAGCTGCTTCAACATCTTCAAATGCTCCTGCGCTGGCTGCTGCTCGAGCCTGTGCAAGTGCCCCTGCACGACGCAGTGCTTCAGCTGCCAGTCGTCATGCTGCAAGCGGCAGCCTTCGTGCTGCAAGTGCCAGTCGTCTTGCTGCGAGGGGCAGCCTTCCTGCTGCGAGGGACACTGCTGCAGCCTCCCGAAACCGTCGTGCCCTGAATGTTCCTGTGGGTGTGTCTGGTCTTGCAAGAATTGTACAGAGGGTTGTCGATGCCCACGGTGTCGTAACCCATGCTGTCTCAGTGGTTGCTTATGTTGATCTAGATCCTTTTTTGGTTGTTGTTTTTCTTGTATTTTTTAGTTGTTAGGCCTTTGATTAAGTTCGAACTTTCATAAATATATGGTGTTTATCCTGTAAAGAAATGATGATTTCAAGGATTTTTCATAGCTATGAGACG] [+] EMBL AK064043 [GAGTGAAGGCGGCGAGGGGTGGTTCTGAGTTGGCCGTTGGCGTGCTGCGTGTGGAGATGGGGGAGGAGGCGGTGGTGATGGAGGCGCCGAGGCCCAAGTCGCCGCCGAGGTACCCGGACCTGTGCGGCCGGCGGCGGATGCAGCTGGAGGTGCAGATCCTGAGCCGCGAGATCACGTTCCTCAAGGATGAGCTTCACTTCCTTGAAGGAGCTCAGCCCGTTTCTCGTTCTGGATGCATTAAAGAGTTGCTAATGTCCTCTTACATTACTTGTCAGGATAAATGAGTTTGTTGGTACAAAACATGACCCACTAATACCAACAAAGAGAAGGAGGCACAGATCTTGCCGTCTTTTTCGGTGGATCGGATCAAAATTGTGTATCTGCATTTCATGTCTTTGCTACTGTTGCAAGTGCTCACCCAAGTGCAAAAGACCAAGGTGCCTCAATTGTTCTTGCAGCTCATGCTGCGACGAGCCATGCTGTAAGCCAAACTGCAGTGCGTGCTGCGCTGGGTCATGCTGTAGTCCAGACTGCTGCTCATGCTGTAAACCTAACTGCAGTTGCTGCAAGACCCCTTCTTGCTGCAAACCGAACTGCTCGTGCTCCTGTCCAAGCTGCAGCTCATGCTGCGATACATCGTGCTGCAAACCGAGCTGCACCTGCTTCAACATCTTTTCATGCTTCAAATCCCTGTACAGCTGCTTCAAGATCCCTTCATGCTTCAAGTCCCAGTGCAACTGCTCTAGCCCCAATTGCTGCACTTGCACCCTTCCAAGCTGTAGCTGCAAGGGCTGTGCCTGTCCAAGCTGTGGATGCAACGGCTGTGGCTGTCCAAGCTGCGGATGCAACGGTTGTGGCTGTCCAAGCTGCGGTTGCAACGGCTGTGGCCTTCCAAGCTGCGGTTGCAACGGCTGCGGCTCGTGCTCTTGCGCCCAATGCAAACCCGATTGTGGCTCGTGCTCTACCAATTGCTGTAGCTGCAAGCCAAGCTGCAACGGCTGCTGCGGCGAGCAGTGCTGCCGCTGCGCGGACTGCTTCTCCTGCTCGTGCCCTCGTTGCTCCAGCTGCTTCAACATCTTCAAATGCTCCTGCGCTGGCTGCTGCTCGAGCCTGTGCAAGTGCCCCTGCACGACGCAGTGCTTCAGCTGCCAGTCGTCATGCTGCAAGCGGCAGCCTTCGTGCTGCAAGTGCCAGTCGTCTTGCTGCGAGGGGCAGCCTTCCTGCTGCGAGGGACACTGCTGCAGCCTCCCGAAACCGTCGTGCCCTGAATGTTCCTGTGGGTGTGTCTGGTCTTGCAAGAATTGTACAGAGGGTTGTCGATGCCCACGGTGTCGTAACCCATGCTGTCTCAGTGGTTGCTTATGTTGATCTAGATCCTTTTTTGGTTGTTGTTTTTCTTGTATTTTTTAGTTGTTAGGCCTTTGATTAAGTTCGAACTTTCATAAATATATGGTGTTTATCCTGTAAAGAAATGATGATTTCAAGGATTTTTCATAGCTATGAGACG] consensusID : consensus_9624#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 496 fasta sequence [ACCTATCACGTTAGCTTAACATTGTATATTTGTGGTGGAATTATGTAATATTCCGATATCGCATTTGAAGTTTTGAACATGTGTGCTCAAATTGAGGGACACATGACTGTAGTGAAAGCAAATATAAATGTCTGAGCAATGGACTATACTTTGTATTCATTACTACAAGTTATGTCCTTTTGCAGGTTGCTAATGTCCTCTTACATTACTTGTCAGGATAAATGAGTTTGTTGGTACAAAACATGACCCACTAATACCAACAAAGAGAAGGAGGCACAGATCTTGCCGTCTTTTTCGGTGGATCGGGTATGTTTTGATCCAATATAGTTTGCTCGCAGGTTCTGAGGGGCAAGAACATTCAAATATCTATAATGTTTTCTGTTGGATTCAACATTCATCACTATTTCCCTCGAAAAAAAAGCATTCGTCACTATTGGAATTGAAAGTCTGAAAGTGCCTCTAGTCCCTTTGTATGTTAAAAGTCAATAAACAAGCA] [+] EMBL AK062809 [ACCTATCACGTTAGCTTAACATTGTATATTTGTGGTGGAATTATGTAATATTCCGATATCGCATTTGAAGTTTTGAACATGTGTGCTCAAATTGAGGGACACATGACTGTAGTGAAAGCAAATATAAATGTCTGAGCAATGGACTATACTTTGTATTCATTACTACAAGTTATGTCCTTTTGCAGGTTGCTAATGTCCTCTTACATTACTTGTCAGGATAAATGAGTTTGTTGGTACAAAACATGACCCACTAATACCAACAAAGAGAAGGAGGCACAGATCTTGCCGTCTTTTTCGGTGGATCGGGTATGTTTTGATCCAATATAGTTTGCTCGCAGGTTCTGAGGGGCAAGAACATTCAAATATCTATAATGTTTTCTGTTGGATTCAACATTCATCACTATTTCCCTCGAAAAAAAAGCATTCGTCACTATTGGAATTGAAAGTCTGAAAGTGCCTCTAGTCCCTTTGTATGTTAAAAGTCAATAAACAAGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9624#1 ------------------------------------------------------------ consensus_9624#2 ------------------------------------------------------------ consensus_9624#0 GAAGAGCGTGGGCATGGACAACTGACCTGAGTGGCCTTGTCAGGGAGAGCCATAGCAGTG 60 consensus_9624#3 ------------------------------------------------------------ consensus_9624#1 ------------------------------------------------------------ consensus_9624#2 ------------------------------------------------------------ consensus_9624#0 GACGTGTCTATCTCCGCCATTGCTTCGTCGACACTGGACGTGCAGACGGCATGGCCATGA 120 consensus_9624#3 ------------------------------------------------------------ consensus_9624#1 ------------------------------------------------------------ consensus_9624#2 ------------------------------------------------------------ consensus_9624#0 GGGCTTTGCACGATGGGTGGTGCCGTGTTGGTGTTATGGGCTGCCACCATGGTTTGAGGC 180 consensus_9624#3 ------------------------------------------------------------ consensus_9624#1 ------------------------------------------------------------ consensus_9624#2 ------------------------------------------------------------ consensus_9624#0 TTTTGATGTTGCTAGATTTTGTGTTTAACGAGGGAGGGAAGAATGTGTTGTTCTTGACAC 240 consensus_9624#3 ------------------------------------------------------------ consensus_9624#1 -----------------------CTCTCTCTCTTTCTCTCTCCAAACCCCACGCACGCCG 37 consensus_9624#2 ------------------------------------------------------------ consensus_9624#0 TGTGCTGTGCTTTTAAGGAGCAGAGATTTCAGAAGCTCTTCAGATATCAGAGAACTTCTT 300 consensus_9624#3 ------------------------------------------------------------ consensus_9624#1 CGTCGCCGCCTCCTCCTCTCCATCTCCGCTGCTATTATTGCCCGCGCAGACGCAGGCCAC 97 consensus_9624#2 ------------------------------------------------------------ consensus_9624#0 TGTAGTAGTAATCAAATGCGCTTTAGACATCTTTTTATCGTTTCTTGCAAGGTCAGTCCC 360 consensus_9624#3 ------------------------------------------------------------ consensus_9624#1 CATCCTTCCTCTCGCTCACGCTCGC-TGCTATATGGGGGTCCTCCTCATCGCATCGCATC 156 consensus_9624#2 ------------------------------------------------------------ consensus_9624#0 TGCTTTGGTACCCGATCTCGCTTTTGTGCAACATCAAAGTTACACTTA-CACAGTAAAGC 419 consensus_9624#3 ------------------------------------------------------------ consensus_9624#1 GCATCACCTCGCACGGGCGCGCGCGCCGTGCCGTGCCGCTAGC------TCGATCCGCCT 210 consensus_9624#2 ------------------------------------------------------------ consensus_9624#0 AGGAATCTTTATGGGACCGTTCGTACTGGTCAATTACTCCAGGCTTTGATTAATGGGTTT 479 consensus_9624#3 ------------------------------------------------------------ consensus_9624#1 CGTACGCCAGCTCGCTCGCTCGCTCCCCCACC--CCGCTGCTGCACGGCTGCGCCCGCG- 267 consensus_9624#2 ------------------------------------------------------------ consensus_9624#0 TAAGTTTTAACCGCAGATTTGGTACAAGTAACAACCTTTATTTACTTTTTATTTCTGCAA 539 consensus_9624#3 ------------------------------------------------------------ consensus_9624#1 CTGTCCCCTGTCCCCCCGCTCGCCGCGGCGATTTATACCCACCACGCCCCCTGCTGCTGC 327 consensus_9624#2 ------------------------------------------------------------ consensus_9624#0 CTGTGTCTTTTAACATGAAAGAATCCAGCTCCATTCAAAAGTTTAGTTTTTATTTTCCAT 599 consensus_9624#3 ------------------------------------------------------------ consensus_9624#1 TATAATGCCCATGAGTGAAGGCGGCGAGGGGTGGTTCT--GAGTTGGCCGTTGGCGTGCT 385 consensus_9624#2 ------------GAGTGAAGGCGGCGAGGGGTGGTTCT--GAGTTGGCCGTTGGCGTGCT 46 consensus_9624#0 TGTGGTGCATGGTCACTCAGCCTGCAGTACTGAATTATCAAAATTTTCTTTTGTCATTTC 659 consensus_9624#3 --------------------------------ACCTATC-ACGTTAGC--TTAACATTGT 25 * * ** * ** * * consensus_9624#1 GCGTGTGGAGATGGGGGAGGAGGCGGTGGTGATGGAGGCGCCGAGGCCCAAGTCGCCGCC 445 consensus_9624#2 GCGTGTGGAGATGGGGGAGGAGGCGGTGGTGATGGAGGCGCCGAGGCCCAAGTCGCCGCC 106 consensus_9624#0 TCTCATGTTAAGTGCATAGTCTATTTTACTTCAACAGGTAGAAAAACTTTTGTGGGTTTG 719 consensus_9624#3 ATATTTGT-GGTGGAATTATGTAATATTCCGATATCGCATTTGAAGTTTTGAACATGTGT 84 ** * * * * consensus_9624#1 GAGGTACCCGGACCTGTGCGGCCGGCGGC--GGATGCAGC---TGGAGGTGCAGATCCTG 500 consensus_9624#2 GAGGTACCCGGACCTGTGCGGCCGGCGGC--GGATGCAGC---TGGAGGTGCAGATCCTG 161 consensus_9624#0 TTTCTAGCTCAAGGAGGAAATTCATGGGTTTGCATCTAGCACATGAGAGAACA-ATATTG 778 consensus_9624#3 GCTCAAATTGAGGGACACATGACTGTAGT--GAAAGCAAA-TATAAATGTCTGAGCAATG 141 * * * * * * * * ** consensus_9624#1 AGCCGCGAGATCACGTTCCTCA-AGGATGAGCTTCACTTCCTTGAAGGAGCTCAGCCCGT 559 consensus_9624#2 AGCCGCGAGATCACGTTCCTCA-AGGATGAGCTTCACTTCCTTGAAGGAGCTCAGCCCGT 220 consensus_9624#0 GTCTAACACAAAGCTCCTTTTGTAGGATGAGCTTCACTTCCTTGAAGGAGCTCAGCCCGT 838 consensus_9624#3 GACTAT-ACTTTGTATTCATTA--CTACAAGTTATGTCCTTTTGCAGGTTGCTAA----- 193 * * * * ** * *** *** * consensus_9624#1 TTCTCGTTCTGGATGCATTAAAGAG-------------------------------ATAA 588 consensus_9624#2 TTCTCGTTCTGGATGCATTAAAGAGTTGCTAATGTCCTCTTACATTACTTGTCAGGATAA 280 consensus_9624#0 TTCTCGTTCTGGATGCATTAAAGAG-------------------------------ATAA 867 consensus_9624#3 -TGTCCTCTTACATTACTTGTCAGG-------------------------------ATAA 221 * ** * * ** ** * **** consensus_9624#1 ATGAGTTTGTTGGTACAAAACATGACCCACTAATACCAACAAAGAGAAGGAGGCACAGAT 648 consensus_9624#2 ATGAGTTTGTTGGTACAAAACATGACCCACTAATACCAACAAAGAGAAGGAGGCACAGAT 340 consensus_9624#0 ATGAGTTTGTTGGTACAAAACATGACCCACTAATACCAACAAAGAGAAGGAGGCACAGAT 927 consensus_9624#3 ATGAGTTTGTTGGTACAAAACATGACCCACTAATACCAACAAAGAGAAGGAGGCACAGAT 281 ************************************************************ consensus_9624#1 CTTGCCGTCTTTTTCGGTGGATCGGATCAAAATTGTGTATCTGCATTTCATGTCTTTGCT 708 consensus_9624#2 CTTGCCGTCTTTTTCGGTGGATCGGATCAAAATTGTGTATCTGCATTTCATGTCTTTGCT 400 consensus_9624#0 CTTGCCGTCTTTTTCGGTGGATCGGATCAAAATTGTGTATCTGCATTTCATGTCTTTGCT 987 consensus_9624#3 CTTGCCGTCTTTTTCGGTGGATCGG---------GTATGTTTTGATCCAATATAGTT--- 329 ************************* ** * * * ** ** * ** consensus_9624#1 ACTGTTGCAAGTGCTCACCCAAGTGCAAAAGACCAAGGTGCCTCAATTGTTCTTGCAGCT 768 consensus_9624#2 ACTGTTGCAAGTGCTCACCCAAGTGCAAAAGACCAAGGTGCCTCAATTGTTCTTGCAGCT 460 consensus_9624#0 ACTGTTGCAAGTGCTCACCCAAGTGCAAAAGACCAAGGTGCCTCAATTGTTCTTGCAGCT 1047 consensus_9624#3 -----------TGCTCG--CAGGTTCTGAGGGGCAAGAACATTCAAATAT---------- 366 ***** ** ** * * * **** **** * * consensus_9624#1 CATGCTGCGACGAGCCGTGCTGTAAGCCAAACTGCAGTGCGTGCTGCGCTGGGTCATGCT 828 consensus_9624#2 CATGCTGCGACGAGCCATGCTGTAAGCCAAACTGCAGTGCGTGCTGCGCTGGGTCATGCT 520 consensus_9624#0 CATGCTGCGACGAGCCATGCTGTAAGCCAAACTGCAGTGCGTGCTGCGCTGGGTCATGCT 1107 consensus_9624#3 ----CTATAATGTTTTCTGTTG-GATTCAACATTCATCAC-TATTTCCCTCGAAAAAAAA 420 ** * * ** ** * *** * ** * * * * ** * * consensus_9624#1 GTAGTCCAGACTGCTGCTCATGCTGTAAACCTAACTGCAGTTGCTGCAAGACCCCTTCT- 887 consensus_9624#2 GTAGTCCAGACTGCTGCTCATGCTGTAAACCTAACTGCAGTTGCTGCAAGACCCCTTCT- 579 consensus_9624#0 GTAGTCCAGACTGCTGCTCATGCTGTAAACCTAACTGCAGTTGCTGCAAGACCCCTTCT- 1166 consensus_9624#3 GCATTC---GTCACTATTGGAATTGAAAGTCTGA----AAGTGCCTCTAGTCCCTTTGTA 473 * * ** ** * ** ** ** * * *** * ** *** ** * consensus_9624#1 TGCTGCAAACCGAACTGCTCGTGCTCCTGTCCAAGCTGCAGCTCATGCTGCGATACATCG 947 consensus_9624#2 TGCTGCAAACCGAACTGCTCGTGCTCCTGTCCAAGCTGCAGCTCATGCTGCGATACATCG 639 consensus_9624#0 TGCTGCAAACCGAACTGCTCGTGCTCCTGTCCAAGCTGCAGCTCATGCTGCGATACATCG 1226 consensus_9624#3 TGTTAAAAGTCAATAAACAAGCA------------------------------------- 496 ** * ** * * * * consensus_9624#1 TGCTGCAAACCGAGCTGCACCTGCTTCAACATCTTTTCATGCTTCAAATCCCTGTACAGC 1007 consensus_9624#2 TGCTGCAAACCGAGCTGCACCTGCTTCAACATCTTTTCATGCTTCAAATCCCTGTACAGC 699 consensus_9624#0 TGCTGCAAACCGAGCTGCACCTGCTTCAACATCTTTTCATGCTTCAAATCCCTGTACAGC 1286 consensus_9624#3 ------------------------------------------------------------ consensus_9624#1 TGCTTCAAGATCCCTTCATGCTTCAAGTCCCAGTGCAACTGCTCTAGCCCCAATTGCTGC 1067 consensus_9624#2 TGCTTCAAGATCCCTTCATGCTTCAAGTCCCAGTGCAACTGCTCTAGCCCCAATTGCTGC 759 consensus_9624#0 TGCTTCAAGATCCCTTCATGCTTCAAGTCCCAGTGCAACTGCTCTAGCCCCAATTGCTGC 1346 consensus_9624#3 ------------------------------------------------------------ consensus_9624#1 ACTTGCACCCTTCCAAGCTGTAGCTGCAAGGGCTGTGCCTGTCCAAGCTGTGGATGCAAC 1127 consensus_9624#2 ACTTGCACCCTTCCAAGCTGTAGCTGCAAGGGCTGTGCCTGTCCAAGCTGTGGATGCAAC 819 consensus_9624#0 ACTTGCACCCTTCCAAGCTGTAGCTGCAAGGGCTGTGCCTGTCCAAGCTGTGGATGCAAC 1406 consensus_9624#3 ------------------------------------------------------------ consensus_9624#1 GGCTGTGGCTGTCCAAGCTGCGGATGCAACGGTTGTGGCTGTCCAAGCTGCGGTTGCAAC 1187 consensus_9624#2 GGCTGTGGCTGTCCAAGCTGCGGATGCAACGGTTGTGGCTGTCCAAGCTGCGGTTGCAAC 879 consensus_9624#0 GGCTGTGGCTGTCCAAGCTGCGGATGCAACGGTTGTGGCTGTCCAAGCTGCGGTTGCAAC 1466 consensus_9624#3 ------------------------------------------------------------ consensus_9624#1 GGCTGTGGCCTTCCAAGCTGCGGTTGCAACGGCTGCGGCTCGTGCTCTTGCGCCCAATGC 1247 consensus_9624#2 GGCTGTGGCCTTCCAAGCTGCGGTTGCAACGGCTGCGGCTCGTGCTCTTGCGCCCAATGC 939 consensus_9624#0 GGCTGTGGCCTTCCAAGCTGCGGTTGCAACGGCTGCGGCTCGTGCTCTTGCGCCCAATGC 1526 consensus_9624#3 ------------------------------------------------------------ consensus_9624#1 AAACCCGATTGTGGCTCGTGCTCTACCAATTGCTGTAGCTGCAAGCCAAGCTGCAACGGC 1307 consensus_9624#2 AAACCCGATTGTGGCTCGTGCTCTACCAATTGCTGTAGCTGCAAGCCAAGCTGCAACGGC 999 consensus_9624#0 AAACCCGATTGTGGCTCGTGCTCTACCAATTGCTGTAGCTGCAAGCCAAGCTGCAACGGC 1586 consensus_9624#3 ------------------------------------------------------------ consensus_9624#1 TGCTGCGGCGAGCAGTGCTGCCGCTGCGCGGACTGCTTCTCCTGCTCGTGCCCTCGTTGC 1367 consensus_9624#2 TGCTGCGGCGAGCAGTGCTGCCGCTGCGCGGACTGCTTCTCCTGCTCGTGCCCTCGTTGC 1059 consensus_9624#0 TGCTGCGGCGAGCAGTGCTGCCGCTGCGCGGACTGCTTCTCCTGCTCGTGCCCTCGTTGC 1646 consensus_9624#3 ------------------------------------------------------------ consensus_9624#1 TCCAGCTGCTTCAACATCTTCAAATGCTCCTGCGCTGGCTGCTGCTCGAGCCTGTGCAAG 1427 consensus_9624#2 TCCAGCTGCTTCAACATCTTCAAATGCTCCTGCGCTGGCTGCTGCTCGAGCCTGTGCAAG 1119 consensus_9624#0 TCCAGCTGCTTCAACATCTTCAAATGCTCCTGCGCTGGCTGCTGCTCGAGCCTGTGCAAG 1706 consensus_9624#3 ------------------------------------------------------------ consensus_9624#1 TGCCCCTGCACGACGCAGTGCTTCAGCTGCCAGTCGTCATGCTGCAAGCGGCAGCCTTCG 1487 consensus_9624#2 TGCCCCTGCACGACGCAGTGCTTCAGCTGCCAGTCGTCATGCTGCAAGCGGCAGCCTTCG 1179 consensus_9624#0 TGCCCCTGCACGACGCAGTGCTTCAGCTGCCAGTCGTCATGCTGCAAGCGGCAGCCTTCG 1766 consensus_9624#3 ------------------------------------------------------------ consensus_9624#1 TGCTGCAAGTGCCAGTCGTCTTGCTGCGAGGGGCAGCCTTCCTGCTGCGAGGGACACTGC 1547 consensus_9624#2 TGCTGCAAGTGCCAGTCGTCTTGCTGCGAGGGGCAGCCTTCCTGCTGCGAGGGACACTGC 1239 consensus_9624#0 TGCTGCAAGTGCCAGTCGTCTTGCTGCGAGGGGCAGCCTTCCTGCTGCGAGGGACACTGC 1826 consensus_9624#3 ------------------------------------------------------------ consensus_9624#1 TGCAGCCTCCCGAAACCGTCGTGCCCTGAATGTTCCTGTGGGTGTGTCTGGTCTTGCAAG 1607 consensus_9624#2 TGCAGCCTCCCGAAACCGTCGTGCCCTGAATGTTCCTGTGGGTGTGTCTGGTCTTGCAAG 1299 consensus_9624#0 TGCAGCCTCCCGAAACCGTCGTGCCCTGAATGTTCCTGTGGGTGTGTCTGGTCTTGCAAG 1886 consensus_9624#3 ------------------------------------------------------------ consensus_9624#1 AATTGTACAGAGGGTTGTCGATGCCCACGGTGTCGTAACCCATGCTGTCTCAGTGGTTGC 1667 consensus_9624#2 AATTGTACAGAGGGTTGTCGATGCCCACGGTGTCGTAACCCATGCTGTCTCAGTGGTTGC 1359 consensus_9624#0 AATTGTACAGAGGGTTGTCGATGCCCACGGTGTCGTAACCCATGCTGTCTCAGTGGTTGC 1946 consensus_9624#3 ------------------------------------------------------------ consensus_9624#1 TTATGTTGATCTAGATCCTTTTTTGGTTGTTGTTTTTCTTGTATTTTTTAGTTGTTAGGC 1727 consensus_9624#2 TTATGTTGATCTAGATCCTTTTTTGGTTGTTGTTTTTCTTGTATTTTTTAGTTGTTAGGC 1419 consensus_9624#0 TTATGTTGATCTAGATCCTTTTTTGGTTGTTGTTTTTCTTGTATTTTTTAGTTGTTAGGC 2006 consensus_9624#3 ------------------------------------------------------------ consensus_9624#1 CTTTGATTAAGTTCGAACTTTCATAAATATATGGTGTTTATCCTGTAAAGAAATGATGAT 1787 consensus_9624#2 CTTTGATTAAGTTCGAACTTTCATAAATATATGGTGTTTATCCTGTAAAGAAATGATGAT 1479 consensus_9624#0 CTTTGATTAAGTTCGAACTTTCATAAATATATGGTGTTTATCCTGTAAAGAAATGATGAT 2066 consensus_9624#3 ------------------------------------------------------------ consensus_9624#1 TTCAAGGATTTTTCATAGCTATGAGACGA 1816 consensus_9624#2 TTCAAGGATTTTTCATAGCTATGAGACG- 1507 consensus_9624#0 TTCAAGGATTTTTCATAGCTATGAGACG- 2094 consensus_9624#3 ----------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||