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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9629#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1035 fasta sequence
[AACTTAACTAAAATTAGCGCCAAGCAAAAGAAAGTCAAGGAGTTCAGCAAAGATGAGGAGCCACACAGCCGTAGTCTGCTCGGCACTGCTCGTGCTTGCCGCTGCATTGCTGCTCCCAGCGCACCATGCGATGGCCGAGGACGTCGTCTCGAGCAGAGACAACACGGCCAGGGCGCCGTCATCTTCGCCGTCCGCTGCTACGGCCACGGCGCCGGCACCGTCGCCCTACACCGACACGGCCATGGCGCCGGCCCCGTCGTCCTCCAACGACACGGCCGTAGAGCCGGTGGCCCCGCCGCCGCTGCCGTTCATCATCGTGGAGGGCGTGGTCTACTGCAAAACGTGCAAGTCGAGGGGCTACAGCAGCGACATGGACGCGTCACCTCTCCCAGGCGCGACGGCGCAGCTGGTGTGCTACGGGAAGAAGGTGGTGAACGTGACGGGGACGGTGACGGACGCGAACGGCTACTTCCTGGTGATGTTCTACGACCTGCGCAACTTCAACCCGCGCACCTGCAAGGTGTTCCTGGGCTCGTCGCCGACGTCGCTGTGCGACAAGCCCGTCTACCCGCCAAACAAGTGGATCGGCCTCTCGCTCCTCAAGGAGACCAGGACCGTCCCGCCCGTCGGCCTGCAGGCCATCTACTGCCCCACCAGCGTCCTCTTCTACGGCCCCGCCAACGCCGGCCAGTGCCCCTCCGGCTAACCAGCTGGCTCTAGCTACTCCGGCAGCTCATGGCCGGCCGTTACGCCGGCGACCGGGCATGCGGCACGCGCGCCGAGGTGCGTGACTGCGCGGGATCGATCGATCGATCAAGGAAGGAATAATTAAAGTAGGCAACTAGACATACGTATTGTTAACGTGTGTCATGGTGTTCCACTTGCAGTAGCGACTAGGTAGCGAGACTGTGTGTGTACGTTCAGTTCTAGTTTGAGAGGTAGCGCGGCTGTGATGTTTCGATCGCTTGTTGTCAGTGTAGCATTGGTGGTTTCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK064172 [AACTTAACTAAAATTAGCGCCAAGCAAAAGAAAGTCAAGGAGTTCAGCAAAGATGAGGAGCCACACAGCCGTAGTCTGCTCGGCACTGCTCGTGCTTGCCGCTGCATTGCTGCTCCCAGCGCACCATGCGATGGCCGAGGACGTCGTCTCGAGCAGAGACAACACGGCCAGGGCGCCGTCATCTTCGCCGTCCGCTGCTACGGCCACGGCGCCGGCACCGTCGCCCTACACCGACACGGCCATGGCGCCGGCCCCGTCGTCCTCCAACGACACGGCCGTAGAGCCGGTGGCCCCGCCGCCGCTGCCGTTCATCATCGTGGAGGGCGTGGTCTACTGCAAAACGTGCAAGTCGAGGGGCTACAGCAGCGACATGGACGCGTCACCTCTCCCAGGCGCGACGGCGCAGCTGGTGTGCTACGGGAAGAAGGTGGTGAACGTGACGGGGACGGTGACGGACGCGAACGGCTACTTCCTGGTGATGTTCTACGACCTGCGCAACTTCAACCCGCGCACCTGCAAGGTGTTCCTGGGCTCGTCGCCGACGTCGCTGTGCGACAAGCCCGTCTACCCGCCAAACAAGTGGATCGGCCTCTCGCTCCTCAAGGAGACCAGGACCGTCCCGCCCGTCGGCCTGCAGGCCATCTACTGCCCCACCAGCGTCCTCTTCTACGGCCCCGCCAACGCCGGCCAGTGCCCCTCCGGCTAACCAGCTGGCTCTAGCTACTCCGGCAGCTCATGGCCGGCCGTTACGCCGGCGACCGGGCATGCGGCACGCGCGCCGAGGTGCGTGACTGCGCGGGATCGATCGATCGATCAAGGAAGGAATAATTAAAGTAGGCAACTAGACATACGTATTGTTAACGTGTGTCATGGTGTTCCACTTGCAGTAGCGACTAGGTAGCGAGACTGTGTGTGTACGTTCAGTTCTAGTTTGAGAGGTAGCGCGGCTGTGATGTTTCGATCGCTTGTTGTCAGTGTAGCATTGG ]
[+] EMBL CA756734 [ CAGCTCATGGCCGGCCGTTACGCCGGCGACCGGGCATGCGGCACGCGCGCCGAGGTGCGTGACTGCGCGGGATCGATCGATCGATCAAGGAAGGAATAATTAAAGTAGGCAACTAGACATACGTATTGTCAACGTGTGTCATGGTGTTCCACTTGCAGTAGCGACTAGGTAGCGAGACTGTGTGTGTACGTTCAGTTCTAGTTTGAGAGGTAGCGCGGCTGTGATGTTTCGATCGCTTGTTGTCAGTGTAGCATTGGTGGTTTCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_9629#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 432 fasta sequence
[TGCCCCACCAGCGTCCTCTTNTACGGCCCCGCCAACGCCGGCCAGTGCCCCTCCGGCTAACCAGCTGGCTCTAGCTACTCCGGCAGCTCATGGCCGGCCGTTACGCCGGCGACCGGGCATGCGGCACGCGCGCCGAGGTGCGTGACTGCGCGGGATCGATCGATCGATCAAGGAAGGAATAATTAAAGTAGGCAACTAGACATACGTATTGTCAACGTGTGTCATGGTGTTCCACTTGCAGTAGCGACTAGGTAGCGAGACTGTGTGTGTACGTTCAGTTCTAGTTTGAGAGGTAGCGCGGCTGTGATGTTTCGATCGCTTGTTGTC-AGTGTAGCATTGGTGGTTTCTCCATTGGTTCTCTGTTCAAACTTGTATGATTTGTCCGCTTGCAAA-TTTTGCAAATTTTTT-AAGACGTTGAAATCTAAAAAAAAA]
[+] EMBL AU173266 [TGCCCCACCAGCGTCCTCTTNTACGGCCCCGCCAACGCCGGCCAGTGCCCCTCCGGCTAACCAGCTGGCTCTAGCTACTCCGGCAGCTCATGGCCGGCCGTTACGCCGGCGACCGGGCATGCGGCACGCGCGCCGAGGTGCGTGACTGCGCGGGATCGATCGATCGATCAAGGAAGGAATAATTAAAGTAGGCAACTAGACATACGTATTGTCAACGTGTGTCATGGTGTTCCACTTGCAGTAGCGACTAGGTAGCGAGACTGTGTGTGTACGTTCAGTTCTAGTTTGAGAGGTAGCGCGGCTGTGATGTTTCGATCGCTTGTTGTC AGTGTAGCATTGGTGGTTTCTCCATTGGTTCTCTGTTCAAACTTGTATGATTTGTCCGCTTGCAAA TTTTGCAAATTTTTT AAGACGTTGAAATCTAAAAAAAAA]
[+] EMBL OSR19551A [TGCCCCACCAGCGTCCTCTTCTACGGCCCCGCCAACGCCGGCCAGTGCCCCTCCGGCTAACCAGCTGGCTCTAGCTACTCCGGCAGCTCATGGCCGGCCGTTACGCCGGCGACCGGGCATGCGGCACG GCGCCGAGGTGCGTGACTNCGCGGGATCGATCGATCGATCAAGGAAGGAATAATTAAAGTAGGCAACTAGACATACGTATTGTCAACGTGTGTCATGGTGTTCCACTTGCAGTAGCGACTAGGTAGCGAGACTGTGTGTGTACGTTCAGTTCTAGTTTGAGAGGTAGCGCGGCTGTNATGTTTCGATCGCTTGTTGTC AGTTTAGCATTGGTGGTTTCTCCATTGGTTCTCTGTTCAAACTTGTATGATTTGTCCGTTTGCAAATTTTTGNAAATTTTTTAAAGACGg ]
[+] EMBL OSR14501A [TGCCCCACCAGCGTCCTCTTCTACGGCCCCGCCAACGCCGGCCAGTGCCCCTCCGGCTAACCAGCTGGCTCTAGCTACTCCGGCAGCTCATGGCCGGCCGTTACGCCGGCGACCGGGCATGCGGCACG GCGCCGAGGTGNGTGACTGCGCGGGATCGATCGATCGATCAAGGAAGGAATAATTAAAGTAGGCAACTAGACATACGTATTGTCAACGTGTGTCATGGTGTTCCACTTGCAGTAGCGACTAGGTAGCGAGACTGTGTGTGTACGTTCAGTTCTAGTTTGAGAGGTAGCGCGGCTGTGATGTTTCGATCGCTTGTTGTC AGTNTAGCATTGGTGGTTTCTCCATTGGTTCTCTGTTCAAACTTGTATGATTTGTCCGCTTGCAA ]
[+] EMBL AU184162 [ CCAGCGTCCTCTTNTACGGCCCCGCCAACGCCGGCCAGTGCCCCTCCGGCTAACCAGCTGGCTCTAGCTACTCCGGCAGCTCATGGCCGGCCGTTACGCCGGCGACCGGGCATGCGGCACGCGCGCCGAGGTGCGTGACTGCGCGGGATCGATCGATCGATCAAGGAAGGAATAATTAAAGTAGGCAACTAGACATACGTATTGTCAACGTGTGTCATGGTGTTCCACTTGCAGTAGCGACTAGGTAGCGAGACTGTGTGTGTACGTTCAGTTCTAGTTTGAGAGGTAGCGCGGCTGTGATGTTTCGATCGCTTGTTGTCAAGTGTAGCATTGGTGGTTTCTCCATTGGTTCTCTGTTCAAACTTGTATGATTTGTCCGCTTGCAAA TTTTGCAAATTTTTT AAGACGTTGAAATCTAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9629#0 AACTTAACTAAAATTAGCGCCAAGCAAAAGAAAGTCAAGGAGTTCAGCAAAGATGAGGAG 60
consensus_9629#1 ------------------------------------------------------------
consensus_9629#0 CCACACAGCCGTAGTCTGCTCGGCACTGCTCGTGCTTGCCGCTGCATTGCTGCTCCCAGC 120
consensus_9629#1 ------------------------------------------------------------
consensus_9629#0 GCACCATGCGATGGCCGAGGACGTCGTCTCGAGCAGAGACAACACGGCCAGGGCGCCGTC 180
consensus_9629#1 ------------------------------------------------------------
consensus_9629#0 ATCTTCGCCGTCCGCTGCTACGGCCACGGCGCCGGCACCGTCGCCCTACACCGACACGGC 240
consensus_9629#1 ------------------------------------------------------------
consensus_9629#0 CATGGCGCCGGCCCCGTCGTCCTCCAACGACACGGCCGTAGAGCCGGTGGCCCCGCCGCC 300
consensus_9629#1 ------------------------------------------------------------
consensus_9629#0 GCTGCCGTTCATCATCGTGGAGGGCGTGGTCTACTGCAAAACGTGCAAGTCGAGGGGCTA 360
consensus_9629#1 ------------------------------------------------------------
consensus_9629#0 CAGCAGCGACATGGACGCGTCACCTCTCCCAGGCGCGACGGCGCAGCTGGTGTGCTACGG 420
consensus_9629#1 ------------------------------------------------------------
consensus_9629#0 GAAGAAGGTGGTGAACGTGACGGGGACGGTGACGGACGCGAACGGCTACTTCCTGGTGAT 480
consensus_9629#1 ------------------------------------------------------------
consensus_9629#0 GTTCTACGACCTGCGCAACTTCAACCCGCGCACCTGCAAGGTGTTCCTGGGCTCGTCGCC 540
consensus_9629#1 ------------------------------------------------------------
consensus_9629#0 GACGTCGCTGTGCGACAAGCCCGTCTACCCGCCAAACAAGTGGATCGGCCTCTCGCTCCT 600
consensus_9629#1 ------------------------------------------------------------
consensus_9629#0 CAAGGAGACCAGGACCGTCCCGCCCGTCGGCCTGCAGGCCATCTACTGCCCCACCAGCGT 660
consensus_9629#1 ----------------------------------------------TGCCCCACCAGCGT 14
**************
consensus_9629#0 CCTCTTCTACGGCCCCGCCAACGCCGGCCAGTGCCCCTCCGGCTAACCAGCTGGCTCTAG 720
consensus_9629#1 CCTCTTNTACGGCCCCGCCAACGCCGGCCAGTGCCCCTCCGGCTAACCAGCTGGCTCTAG 74
****** *****************************************************
consensus_9629#0 CTACTCCGGCAGCTCATGGCCGGCCGTTACGCCGGCGACCGGGCATGCGGCACGCGCGCC 780
consensus_9629#1 CTACTCCGGCAGCTCATGGCCGGCCGTTACGCCGGCGACCGGGCATGCGGCACGCGCGCC 134
************************************************************
consensus_9629#0 GAGGTGCGTGACTGCGCGGGATCGATCGATCGATCAAGGAAGGAATAATTAAAGTAGGCA 840
consensus_9629#1 GAGGTGCGTGACTGCGCGGGATCGATCGATCGATCAAGGAAGGAATAATTAAAGTAGGCA 194
************************************************************
consensus_9629#0 ACTAGACATACGTATTGTTAACGTGTGTCATGGTGTTCCACTTGCAGTAGCGACTAGGTA 900
consensus_9629#1 ACTAGACATACGTATTGTCAACGTGTGTCATGGTGTTCCACTTGCAGTAGCGACTAGGTA 254
****************** *****************************************
consensus_9629#0 GCGAGACTGTGTGTGTACGTTCAGTTCTAGTTTGAGAGGTAGCGCGGCTGTGATGTTTCG 960
consensus_9629#1 GCGAGACTGTGTGTGTACGTTCAGTTCTAGTTTGAGAGGTAGCGCGGCTGTGATGTTTCG 314
************************************************************
consensus_9629#0 ATCGCTTGTTGTCAGTGTAGCATTGGTGGTTTCTCCAAAAAAA----AAAAAAAAAAAAA 1016
consensus_9629#1 ATCGCTTGTTGTCAGTGTAGCATTGGTGGTTTCTCCATTGGTTCTCTGTTCAAACTTGTA 374
************************************* *** *
consensus_9629#0 AAAAAAAAAAAAAAAAAAA--------------------------------------- 1035
consensus_9629#1 TGATTTGTCCGCTTGCAAATTTTGCAAATTTTTTAAGACGTTGAAATCTAAAAAAAAA 432
* ***
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||