cluster # 964

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 964 cluster # 964 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_964#0 length = 616 sequences # 1

consensus_964#1 length = 147 sequences # 1

consensusID : consensus_964#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 616
fasta sequence

                              [TTTTTTTTTTTTTTTAAATTGAAACTTCATTTATTATGCATATATCAAGGCCTTATATGCAGAGTACATTTGTATACACACAAGCTTCAAATTTCAAGATCCTAGGCTAGAATATGATGATGTCATATATCAAGTTTATGACCAAAAGTTGCATACATCATCAGATATCTTACAATCTTCTTTCTAACNCNNCCTGTGTGCTGCGTCCCCTCTGGGCTCACCTAAACCAAAGGCTTATCGGAATCCCGGNCGAAACCCTCCGGGAGGGAGGGGGGGGCCCCCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACACAATTCGCCCCCCCATATTAAGGGGGGGGGGGGGTTTTTATTTACCCCCGCCCCCCTCCTATTTTGGGGGGGGGGGTGTTTTTTTTTAAAAAAAAACAACCCCCNGGGGGGGGGGGGGGGAAAAAAAAAACCCCCCCCGGGGGGGGGGGGCCCCCCCCCCCCCACCCTATATAAATTATCCCCCCCCCCCTCCGTCTGGGGGGGAAAAAAAAAAAGAAAAAAAACCCCTCTTTTTTTTTTTTTCGGGGGGGGGGGGGGGGGGGGGGGGGGNNNANAANNAAAAAAAAAAAAAAA]

[+] EMBL CA761778             [TTTTTTTTTTTTTTTAAATTGAAACTTCATTTATTATGCATATATCAAGGCCTTATATGCAGAGTACATTTGTATACACACAAGCTTCAAATTTCAAGATCCTAGGCTAGAATATGATGATGTCATATATCAAGTTTATGACCAAAAGTTGCATACATCATCAGATATCTTACAATCTTCTTTCTAACNCNNCCTGTGTGCTGCGTCCCCTCTGGGCTCACCTAAACCAAAGGCTTATCGGAATCCCGGNCGAAACCCTCCGGGAGGGAGGGGGGGGCCCCCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACACAATTCGCCCCCCCATATTAAGGGGGGGGGGGGGTTTTTATTTACCCCCGCCCCCCTCCTATTTTGGGGGGGGGGGTGTTTTTTTTTAAAAAAAAACAACCCCCNGGGGGGGGGGGGGGGAAAAAAAAAACCCCCCCCGGGGGGGGGGGGCCCCCCCCCCCCCACCCTATATAAATTATCCCCCCCCCCCTCCGTCTGGGGGGGAAAAAAAAAAAGAAAAAAAACCCCTCTTTTTTTTTTTTTCGGGGGGGGGGGGGGGGGGGGGGGGGGNNNANAANNAAAAAAAAAAAAAAA]




>consensus_964#0
TTTTTTTTTTTTTTTAAATTGAAACTTCATTTATTATGCATATATCAAGGCCTTATATGC
AGAGTACATTTGTATACACACAAGCTTCAAATTTCAAGATCCTAGGCTAGAATATGATGA
TGTCATATATCAAGTTTATGACCAAAAGTTGCATACATCATCAGATATCTTACAATCTTC
TTTCTAACNCNNCCTGTGTGCTGCGTCCCCTCTGGGCTCACCTAAACCAAAGGCTTATCG
GAATCCCGGNCGAAACCCTCCGGGAGGGAGGGGGGGGCCCCCCGNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNACACAATTCGCCCCCCCATATTAAGGGGGGGGGGGGGTTTT
TATTTACCCCCGCCCCCCTCCTATTTTGGGGGGGGGGGTGTTTTTTTTTAAAAAAAAACA
ACCCCCNGGGGGGGGGGGGGGGAAAAAAAAAACCCCCCCCGGGGGGGGGGGGCCCCCCCC
CCCCCACCCTATATAAATTATCCCCCCCCCCCTCCGTCTGGGGGGGAAAAAAAAAAAGAA
AAAAAACCCCTCTTTTTTTTTTTTTCGGGGGGGGGGGGGGGGGGGGGGGGGGNNNANAAN
NAAAAAAAAAAAAAAA

consensusID : consensus_964#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 147
fasta sequence

                              [AAGATATCTGATGATGTATGCAACTTTTGGTCATAAACTTGATATATGACATCATCATATTCTAGCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCG]

[+] EMBL CF317652             [AAGATATCTGATGATGTATGCAACTTTTGGTCATAAACTTGATATATGACATCATCATATTCTAGCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCG]




>consensus_964#1
AAGATATCTGATGATGTATGCAACTTTTGGTCATAAACTTGATATATGACATCATCATAT
TCTAGCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAACCCCTGTCTTGCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_964#0      TTTTTTTTTTTTTTTAAATTGAAACTTCATTTATTATGCATATATCAAGGCCTTATATGC 60
consensus_964#1      ------------------------------------------------------------
                                                                                 

consensus_964#0      AGAGTACATTTGTATACACACAAGCTTCAAATTTCAAGATCCTAGGCTAGAATATGATGA 120
consensus_964#1      ------------------------------------------------------------
                                                                                 

consensus_964#0      TGTCATATATCAAGTTTATGACCAAAAGTTGCATACATCATCAGATATCTTACAATCTTC 180
consensus_964#1      ------------------------------------------------------------
                                                                                 

consensus_964#0      TTTCTAACNCNNCCTGTGTGCTGCGTCCCCTCTGGGCTCACCTAAACCAAAGGCTTATCG 240
consensus_964#1      -----AAGATATCTGATGATGTATGCAACTTTTGG--TCA--TAAACTTGATATATGACA 51
                          **     *   **   *  *   * * ***  ***  *****   *    *  * 

consensus_964#0      GAATCCCGGNCGAAACCCTCCGGGAGGGAGGGGGGGGCCCCCCGNNNNNNNNNNNNNNNN 300
consensus_964#1      TCATCATATTCTAG--CCTAAAAAAAAAAAAAAAAAA-------AAAAAAAAAAAAAAAA 102
                       ***     * *   ***     *   *                               

consensus_964#0      NNNNNNNNNNNNNNNNNNNACACAATTCGCCCCCCCATATTAAGGGGGGGGGGGGGTTTT 360
consensus_964#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCG--------------- 147
                                        * * **      ****  * **   *               

consensus_964#0      TATTTACCCCCGCCCCCCTCCTATTTTGGGGGGGGGGGTGTTTTTTTTTAAAAAAAAACA 420
consensus_964#1      ------------------------------------------------------------
                                                                                 

consensus_964#0      ACCCCCNGGGGGGGGGGGGGGGAAAAAAAAAACCCCCCCCGGGGGGGGGGGGCCCCCCCC 480
consensus_964#1      ------------------------------------------------------------
                                                                                 

consensus_964#0      CCCCCACCCTATATAAATTATCCCCCCCCCCCTCCGTCTGGGGGGGAAAAAAAAAAAGAA 540
consensus_964#1      ------------------------------------------------------------
                                                                                 

consensus_964#0      AAAAAACCCCTCTTTTTTTTTTTTTCGGGGGGGGGGGGGGGGGGGGGGGGGGNNNANAAN 600
consensus_964#1      ------------------------------------------------------------
                                                                                 

consensus_964#0      NAAAAAAAAAAAAAAA 616
consensus_964#1      ----------------