These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9641#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1720 fasta sequence [TTTCGTTTCCGTTTCTTGCGCCTCCTCCAACCGCGGCGGCCGTCAGTGGGGAGCCTCGTCGGCGTCCGCCTCCGCCATTCGCGAGAGGAATTCAGGTGATCCCTCTCCCTACCAGAGCCGCGCTCCCCTCCGATCCTCCCCGAATCTGGATGATCTCCCCCGATTCCGCTCGGCTTCGCTGATCCCCCCTCCGCCGCCGCCGCCGCCGCCG-GGCGNGTGGGCT-ATCCCGCTTGTCGGAATCGATCGATTTCTGAGGCCTTGGATTGTGATGAAGTCATGGATATCGGGCCGCATAGCATCCAGCTGATCGCGNCGCCGTCCCTCTATCACGCCGCCTCCGCTGCCGCCATGGGTG-ATCACCGCGACCCGGCTTTCCCCGCGGCGGCGGGCGGCTGCCGGCTGCCCAAGACGTCGTCGGTGAGCGTCACGGAGTCCGTCACCGCGGTGCACGATTTCAAGGTGACGGGTTACTCGCTGATCGAGGGGCTGGGCATCGGCAGGTACGTCAGCTCATCCACCTTCACCGTCGGCGGCGTCGACTGGGCCGTCAGGTTCTACCCCGACGGCTCCACCGTCACCTGCCTCGGGAACGCGTCGGCGTTCCTCTACTACTGCGGCAGGGAGAAGGAGGTCAGGACCAGGTTCACCCTGAATCTGCTCGGCAAGGACGGCAAATTGTCGCAGGTGACCAATTCCTACATGAAGCACACCTTCTCCCCGGCGAGTGACAATTGGGGATTCATCAAATTCGCCGAGAAATCGAAGCTGCAGAGCTCGCCGTTCCTCCACAACGACTGCCTGACCATCAGGTGCTTGCTGACCGTCGTCAGGGAATCCCACACCAAGGATGTTGAGGTCAATTCTGTTGTTGTCCCACCGTCCAACCTGCATACCGATTTTGAGAACATGCTCCAGGATGGTGAAGGTTCAGATGTGACATTCGCCGTGGGTGGCCAAGAGTTCCGTGCTCATAAATGTGTTCTTGCCTTCCGGTCCCCGGTGTTCAAGGCCGAGCTTTTCGGTCCGATGAAAGAAAATGGCACGCAATGTATCAAGATCGACGACATGGAGCCTGAGGTTTTTGAGGCTCTTCTTCTCTTCATTTACACAGATAGGCTGCCAGATAGCTGCAGAGATGGCAAGGCTGCAGCAATGCAGCACTTGCTAGTTG-CCGCGGATCGGTACGGAGTGGACAGGCTGAGGCTGATTTGTGAGAGGCGGCTCAGCGAAACCATTGATGTGGAAACAGTGGCAACCACTCTTGTTTTAGCAGAACAACATCACTGCTCGCAGCTGAGACAGGCTTGCATTGGGTTTGTGGCATCTCCAAACATGCTTGGGCCAGTCATAGAAAGCGATGGATTTAAGCATCTGGTAGAAAGCTGCCCGTTGATTATGAAGGAGATCTTGAGTAAGGTTTCACATATTTGGATTGACAAGTCTTGCTGAGAAGTTTATTAAGCTATCACTTTTGTAGTAGTACATCTTAGTAGTTATGAAAGTCATGATCAGTTATCTACATCTCTATATGCGACTTTGATCTTTTTAAGTTGTGTGATCCTTCCAACGCCTAATATGTATGAACAGTAGAAATCTTATGTATATGGATGACTCCTTAGCACCATGGTGTAAGTTTGGGCATTCTTCCCCTTTTCATCTTTTTTGAAATGTTGGATTTACTCTATACTCACATGCTTTCCTGAATGTATAATGACTAGTT] [+] EMBL AK070994 [TTTCGTTTCCGTTTCTTGCGCCTCCTCCAACCGCGGCGGCCGTCAGTGGGGAGCCTCGTCGGCGTCCGCCTCCGCCATTCGCGAGAGGAATTCAGGTGATCCCTCTCCCTACCAGAGCCGCGCTCCCCTCCGATCCTCCCCGAATCTGGATGATCTCCCCCGATTCCGCTCGGCTTCGCTGATCCCCCCTCCGCCGCCGCCGCCGCCGCCGCGGCGGGTGGGCT ATCCCGCTTGTCGGAATCGATCGATTTCTGAGGCCTTGGATTGTGATGAAGTCATGGATATCGGGCCGCATAGCATCCAGCTGATCGCGCCGCCGTCCCTCTATCACGCCGCCTCCGCTGCCGCCATGGGTG ATCACCGCGACCCGGCTTTCCCCGCGGCGGCGGGCGGCTGCCGGCTGCCCAAGACGTCGTCGGTGAGCGTCACGGAGTCCGTCACCGCGGTGCACGATTTCAAGGTGACGGGTTACTCGCTGATCGAGGGGCTGGGCATCGGCAGGTACGTCAGCTCATCCACCTTCACCGTCGGCGGCGTCGACTGGGCCGTCAGGTTCTACCCCGACGGCTCCACCGTCACCTGCCTCGGGAACGCGTCGGCGTTCCTCTACTACTGCGGCAGGGAGAAGGAGGTCAGGACCAGGTTCACCCTGAATCTGCTCGGCAAGGACGGCAAATTGTCGCAGGTGACCAATTCCTACATGAAGCACACCTTCTCCCCGGCGAGTGACAATTGGGGATTCATCAAATTCGCCGAGAAATCGAAGCTGCAGAGCTCGCCGTTCCTCCACAACGACTGCCTGACCATCAGGTGCTTGCTGACCGTCGTCAGGGAATCCCACACCAAGGATGTTGAGGTCAATTCTGTTGTTGTCCCACCGTCCAACCTGCATACCGATTTTGAGAACATGCTCCAGGATGGTGAAGGTTCAGATGTGACATTCGCCGTGGGTGGCCAAGAGTTCCGTGCTCATAAATGTGTTCTTGCCTTCCGGTCCCCGGTGTTCAAGGCCGAGCTTTTCGGTCCGATGAAAGAAAATGGCACGCAATGTATCAAGATCGACGACATGGAGCCTGAGGTTTTTGAGGCTCTTCTTCTCTTCATTTACACAGATAGGCTGCCAGATAGCTGCAGAGATGGCAAGGCTGCAGCAATGCAGCACTTGCTAGTTG CCGCGGATCGGTACGGAGTGGACAGGCTGAGGCTGATTTGTGAGAGGCGGCTCAGCGAAACCATTGATGTGGAAACAGTGGCAACCACTCTTGTTTTAGCAGAACAACATCACTGCTCGCAGCTGAGACAGGCTTGCATTGGGTTTGTGGCATCTCCAAACATGCTTGGGCCAGTCATAGAAAGCGATGGATTTAAGCATCTGGTAGAAAGCTGCCCGTTGATTATGAAGGAGATCTTGAGTAAGGTTTCACATATTTGGATTGACAAGTCTTGCTGAGAAGTTTATTAAGCTATCACTTTTGTAGTAGTACATCTTAGTAGTTATGAAAGTCATGATCAGTTATCTACATCTCTATATGCGACTTTGATCTTTTTAAGTTGTGTGATCCTTCCAACGCCTAATATGTATGAACAGTAGAAATCTTATGTATATGGATGACTCCTTAGCACCATGGTGTAAGTTTGGGCATTCTTCCCCTTTTCATCTTTTTTGAAATGTTGGATTTACTCTATACTCACATGCTTTCCTGAATGTATAATGACTAGTT] [+] EMBL OSS4851A [ TTCGTTTCCGTTTCTTGCGCCTCCTCCAACCGCGGCGGCCGTCAGTGGGGAGCCTCGTNGGCGTCCGCCTCCGCCATTCGCGAGAGGAATTCAGGTGATCCCTCTCCCTACCAGAGCCGCGCTCCCCTCCGATCCTCCCCGAATCTGGATGATCTCCCCCGATTCCGCTCGGCTTCGCTGATCCCCCCTCCGCCGCCGCCGNCGCCGCCG GGTGNTNGGGCT ATCCCGCTTGTCGGAATCGATCGATTTCTGAGGCCTTGGATTGTGATGAAGTCATGGATATCGGGCCGCATAGCATCCAGCTGATCGCGNCGCCGT ] [+] EMBL OSC172 [ CGTTTCCGTTTCTTGCGCCTCCTCCAACCGCGGCGGCCGTCAGTGGGGAGCCTCGTCGGCGTCCG CTCCGCCATTCGCGAGAGGAATTCAGGTGATCCCTCTCCCTACCAGAGCCGCGCTCCCCTCCGATCCTCCCCGAATCTGGATGATCTCCCCCGATTCCGCTCGGCTTCGCTGATCCCCCCTCCGCCGCCGNCGCCGCCGCCG GGATNGTGNGCTAATCCCGCTTGTCGGAATCGATCGATTTCTGAGGCCTTGGATTGTGATGAAGTCATGGATATCGGGCCGCATAGCATCCAGCTGATCGCGNCGCCGTNCCTCTATCACGGCGCCTNCGTTGCCGCCATGGGTGAATNAACGCGAa ] [+] EMBL CB096468 [ ATGTATCAAGATCGACGACATGGAGCCTGAGGTTTTTGAGGCCCTTCTTCACTTCATTTACACAGATAGGCTGCCAGATAGCTGCAGAGATGGCAAGGCTGCAGCAATGCAGCACTTGCTAGTTG CCGCGGATCGGTACGGAGTGGACAGGCTGAGGCTGATTTGTGAGAGGCGGCTCAGCGAAACCATTGATGTGGAAACAGTGGCAACCACTCTTGTTTTAGCAGAACAACATCACTGCTCGCAGCTGAGACAGGCTTGCATTGGGTTTGTGGCATCTCCAAACATGCTTGGGCCAGTCATAGAAAGCGATGGATTTAAGCATCTGGTAGAAAGCTGCCCGTTGATTATGAAGGAGATCTTGAGTAAGGTTTCACATATTTGGATTGACAAGTCTTGCTGAGAAGTTTATTAAGCTATCACTTTTGTAGTAGTACATCTTAGTAGTTATGAAAGTCATGATCAGTTATCTACATCTCTATATGCGACTTTGATCTTTTTAAGTTGTGTGATCCTTCCAACGCCTAATATGTATGAACAGTAGAAATCTTATGTATATGGATGACTCCTTAGCACCATGGTGTAAGTTTGGGCATTCTTCCCCTTTTCATCTTTTTTGAAATGTTGGATTTACTCT ] [+] EMBL BQ906662 [ GGCTGCCAGATAGCTGCAGAGATGGCAAGGCTGCAGCAATGCAGCACTTGCTAGTTGTCTGCGGATCGGTACGGAGTGGACAGGCTGAGGCTGATTTGTGAGAGGCGGCTCAGCGAAACCATTGATGTGGAAACAGTGGCAACCACTCTTGTTTTAGCAGAACAACATCACTGCTCGCAGCTGAGACAGGCTTGCATTGGGTTTGTGGCATCTCCAAACATGCTTGGGCCAGTCATAGAAAGCGATGGATTTAAGCATCTGGTAGAAAGCTGCCCGTTGATTATGAAGGAGATCTTGAGTAAGGTTTCACATATTTGGATTGACAAGTCTTGCTGAGAAGTTTATTAAGCTATCACTTTTGTAGTAGTACATCTTAGTAGTTATGAAAGTCATGATCAGTTATCTACATCTCTATATGCGACTTTGATCTTTTTAAGTTGTGTGATCCTTCC ACGCCTAATATGTATGAACAGTAGAAATCTTATGTATATGGATGACTCCTTAGCACCATGGTGTAAGTTTGGGCAaaaaa ] consensusID : consensus_9641#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 431 fasta sequence [GCAGAACAACATCACTGCTCGCAGCTGAGACAGGCTTGCATTGGGTTTGTGGCATCTCCAAACATGCTTGGGCCAGTCATAGAAAGCGATGGATTTAAGCATCTGGTAGAAAGCTGCCCGTTGATTATGAAGGAGATCTTGAGTAAGGTTTCACATATTTGGATTGACAAGTCTTGCTGAGAAGTTTATTAAGCTATCACTTTTGTAGTAGTACATCTTAGTAGTTATGAAAGTCATGATCAGTTATCTACATCTCTATATGCGACTTTGATCTTTTTAAGTTGTGTGATCCTTCCAACGCCTAATATGTATGAACAGTAGAAATCTTATGTATATGGATGACTCCTTAGCACCATGGTGTAAGTTTGGGCATTCTTCCCCTTTTCATCTTTTTTGAAATGTTGGATTTACTCTATACTCAAAAAAAAAAA] [+] EMBL AU174341 [GCAGAACAACATCACTGCTCGCAGCTGAGACAGGCTTGCATTGGGTTTGTGGCATCTCCAAACATGCTTGGGCCAGTCATAGAAAGCGATGGATTTAAGCATCTGGTAGAAAGCTGCCCGTTGATTATGAAGGAGATCTTGAGTAAGGTTTCACATATTTGGATTGACAAGTCTTGCTGAGAAGTTTATTAAGCTATCACTTTTGTAGTAGTACATCTTAGTAGTTATGAAAGTCATGATCAGTTATCTACATCTCTATATGCGACTTTGATCTTTTTAAGTTGTGTGATCCTTCCAACGCCTAATATGTATGAACAGTAGAAATCTTATGTATATGGATGACTCCTTAGCACCATGGTGTAAGTTTGGGCATTCTTCCCCTTTTCATCTTTTTTGAAATGTTGGATTTACTCTATACTCAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9641#0 TTTCGTTTCCGTTTCTTGCGCCTCCTCCAACCGCGGCGGCCGTCAGTGGGGAGCCTCGTC 60 consensus_9641#1 ------------------------------------------------------------ consensus_9641#0 GGCGTCCGCCTCCGCCATTCGCGAGAGGAATTCAGGTGATCCCTCTCCCTACCAGAGCCG 120 consensus_9641#1 ------------------------------------------------------------ consensus_9641#0 CGCTCCCCTCCGATCCTCCCCGAATCTGGATGATCTCCCCCGATTCCGCTCGGCTTCGCT 180 consensus_9641#1 ------------------------------------------------------------ consensus_9641#0 GATCCCCCCTCCGCCGCCGCCGCCGCCGCCGGGCGNGTGGGCTATCCCGCTTGTCGGAAT 240 consensus_9641#1 ------------------------------------------------------------ consensus_9641#0 CGATCGATTTCTGAGGCCTTGGATTGTGATGAAGTCATGGATATCGGGCCGCATAGCATC 300 consensus_9641#1 ------------------------------------------------------------ consensus_9641#0 CAGCTGATCGCGNCGCCGTCCCTCTATCACGCCGCCTCCGCTGCCGCCATGGGTGATCAC 360 consensus_9641#1 ------------------------------------------------------------ consensus_9641#0 CGCGACCCGGCTTTCCCCGCGGCGGCGGGCGGCTGCCGGCTGCCCAAGACGTCGTCGGTG 420 consensus_9641#1 ------------------------------------------------------------ consensus_9641#0 AGCGTCACGGAGTCCGTCACCGCGGTGCACGATTTCAAGGTGACGGGTTACTCGCTGATC 480 consensus_9641#1 ------------------------------------------------------------ consensus_9641#0 GAGGGGCTGGGCATCGGCAGGTACGTCAGCTCATCCACCTTCACCGTCGGCGGCGTCGAC 540 consensus_9641#1 ------------------------------------------------------------ consensus_9641#0 TGGGCCGTCAGGTTCTACCCCGACGGCTCCACCGTCACCTGCCTCGGGAACGCGTCGGCG 600 consensus_9641#1 ------------------------------------------------------------ consensus_9641#0 TTCCTCTACTACTGCGGCAGGGAGAAGGAGGTCAGGACCAGGTTCACCCTGAATCTGCTC 660 consensus_9641#1 ------------------------------------------------------------ consensus_9641#0 GGCAAGGACGGCAAATTGTCGCAGGTGACCAATTCCTACATGAAGCACACCTTCTCCCCG 720 consensus_9641#1 ------------------------------------------------------------ consensus_9641#0 GCGAGTGACAATTGGGGATTCATCAAATTCGCCGAGAAATCGAAGCTGCAGAGCTCGCCG 780 consensus_9641#1 ------------------------------------------------------------ consensus_9641#0 TTCCTCCACAACGACTGCCTGACCATCAGGTGCTTGCTGACCGTCGTCAGGGAATCCCAC 840 consensus_9641#1 ------------------------------------------------------------ consensus_9641#0 ACCAAGGATGTTGAGGTCAATTCTGTTGTTGTCCCACCGTCCAACCTGCATACCGATTTT 900 consensus_9641#1 ------------------------------------------------------------ consensus_9641#0 GAGAACATGCTCCAGGATGGTGAAGGTTCAGATGTGACATTCGCCGTGGGTGGCCAAGAG 960 consensus_9641#1 ------------------------------------------------------------ consensus_9641#0 TTCCGTGCTCATAAATGTGTTCTTGCCTTCCGGTCCCCGGTGTTCAAGGCCGAGCTTTTC 1020 consensus_9641#1 ------------------------------------------------------------ consensus_9641#0 GGTCCGATGAAAGAAAATGGCACGCAATGTATCAAGATCGACGACATGGAGCCTGAGGTT 1080 consensus_9641#1 ------------------------------------------------------------ consensus_9641#0 TTTGAGGCTCTTCTTCTCTTCATTTACACAGATAGGCTGCCAGATAGCTGCAGAGATGGC 1140 consensus_9641#1 ------------------------------------------------------------ consensus_9641#0 AAGGCTGCAGCAATGCAGCACTTGCTAGTTGCCGCGGATCGGTACGGAGTGGACAGGCTG 1200 consensus_9641#1 ------------------------------------------------------------ consensus_9641#0 AGGCTGATTTGTGAGAGGCGGCTCAGCGAAACCATTGATGTGGAAACAGTGGCAACCACT 1260 consensus_9641#1 ------------------------------------------------------------ consensus_9641#0 CTTGTTTTAGCAGAACAACATCACTGCTCGCAGCTGAGACAGGCTTGCATTGGGTTTGTG 1320 consensus_9641#1 ---------GCAGAACAACATCACTGCTCGCAGCTGAGACAGGCTTGCATTGGGTTTGTG 51 *************************************************** consensus_9641#0 GCATCTCCAAACATGCTTGGGCCAGTCATAGAAAGCGATGGATTTAAGCATCTGGTAGAA 1380 consensus_9641#1 GCATCTCCAAACATGCTTGGGCCAGTCATAGAAAGCGATGGATTTAAGCATCTGGTAGAA 111 ************************************************************ consensus_9641#0 AGCTGCCCGTTGATTATGAAGGAGATCTTGAGTAAGGTTTCACATATTTGGATTGACAAG 1440 consensus_9641#1 AGCTGCCCGTTGATTATGAAGGAGATCTTGAGTAAGGTTTCACATATTTGGATTGACAAG 171 ************************************************************ consensus_9641#0 TCTTGCTGAGAAGTTTATTAAGCTATCACTTTTGTAGTAGTACATCTTAGTAGTTATGAA 1500 consensus_9641#1 TCTTGCTGAGAAGTTTATTAAGCTATCACTTTTGTAGTAGTACATCTTAGTAGTTATGAA 231 ************************************************************ consensus_9641#0 AGTCATGATCAGTTATCTACATCTCTATATGCGACTTTGATCTTTTTAAGTTGTGTGATC 1560 consensus_9641#1 AGTCATGATCAGTTATCTACATCTCTATATGCGACTTTGATCTTTTTAAGTTGTGTGATC 291 ************************************************************ consensus_9641#0 CTTCCAACGCCTAATATGTATGAACAGTAGAAATCTTATGTATATGGATGACTCCTTAGC 1620 consensus_9641#1 CTTCCAACGCCTAATATGTATGAACAGTAGAAATCTTATGTATATGGATGACTCCTTAGC 351 ************************************************************ consensus_9641#0 ACCATGGTGTAAGTTTGGGCATTCTTCCCCTTTTCATCTTTTTTGAAATGTTGGATTTAC 1680 consensus_9641#1 ACCATGGTGTAAGTTTGGGCATTCTTCCCCTTTTCATCTTTTTTGAAATGTTGGATTTAC 411 ************************************************************ consensus_9641#0 TCTATACTCACATGCTTTCCTGAATGTATAATGACTAGTT 1720 consensus_9641#1 TCTATACTCAAAAAAAAAAA-------------------- 431 ********** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||