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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9644#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1418 fasta sequence
[TCTCTCTCTCGCGTGGCTTCCTACCGAAATCTTCGAATCCATCGTCGTCGAGAAGAGACGAGGACGCCCTCCCCAGTGGCGGCGAGCGCCCCCCCCCCCCACCCCCACCCCCGAGGAAGAAGAAGAGGAGGAGGAAGGTTTTGCGCGCCGTTCGCGGATTCCTCTCCGTCCTCACGCCCCGGATTCGGTTCGTCCCGCGGTCCCGACTGAAGAATGAGGATGGACAGGAATGAGGAAGAGATGGTCACGAATGACTCGGACCCTCTTCTCAAGAGGGAAAACGAGGAGGCAGAGTCATCGTCGCAGCTGACACCGCCTAAGCCAGCAACCTTGAGCGCGCTGGAGATTGAGGATGAGGAGACCGACGGTTCTTCTGCAGGGTGCTGCCGCATTTGTCTCGAGACTGATTCTGAGTTAGGTGATGAACTGATATCACCTTGCATGTGCAAGGGAACTCAACAATTTGTTCACCGCTCATGCCTTGACCACTGGAGATCTGTTAAGGAAGGATTTGCATTTTCACATTGCACAACATGCAAAGCTCAATTCCATCTCCGAGTGGAAACTTGGGAGGACAATTCATGGCGTAAAATGAAGTTCCGGATATTTGTTGCAAGAGATGTTATCCTTGTGTTTCTTGCTGTACAACTTACTATTGCTATGATTGGTGCAATTTCTTACTTTCTAGATAGGGATGGAAGTTTCAGAAACAGTTTCAGTGATGGTTGGGATCGCTTCTTGTCAAAACATCCAATACCATTCTATTACTGCATAGGTGTTGTTGTTTTCTTTGTGCTACTCGGATTCTTCGGGTTGATACTGCATTGTTCGTCCTTCAATGATAACCAAGACCCATGCCTAGCTGGGTGCCGGAACTGCTGCTATGGTTGGGGCGTCCTGGACTGCCTGCCTGCTTCTCTGGAGGCCTGCTTTGCCCTGGTGGTGGTTTTC-GTTGTC-GTGTTCGCCATCCTCGGTATCGCATACGGTTTCCTCGCGGC-AACTATGGCTGTCCAAAGAATCTGGCAGCGGCATTACCACATCTTGACCAAAAGAGAACTCACAAAGGAGTACGTGGTGGAAGATCTTCATGGCAGCTACACGCCACCGAAGCTTGATCCAGAGCATGAGGAGCGGCTGAAAATGCTGAAGCTCCTCTAGCCTCTCATGGCAATTACAGAACTACTACCGCCTGTATATCTGCTCCTCCTCTTTCGCTTCAGATTAACAAACGGCAATCTGTTGTACACCAGTGTAAATATTGAGTACGTGTGCCGAAACAAAATGTCTCGGGTGAGTGTTTGTTGTCAATTTAATTCGATCGATATGTTTACCTTGTCGCGTGAGTGTTCCTCGATCATACTGCTGCTGGAACTACACTATGAACAACTAGTAGTAATTTTATCCTTGCGA----AAAAAAAA]
[+] EMBL AK072915 [TCTCTCTCTCGCGTGGCTTCCTACCGAAATCTTCGAATCCATCGTCGTCGAGAAGAGACGAGGACGCCCTCCCCAGTGGCGGCGAGCGCCCCCCCCCCCCACCCCCACCCCCGAGGAAGAAGAAGAGGAGGAGGAAGGTTTTGCGCGCCGTTCGCGGATTCCTCTCCGTCCTCACGCCCCGGATTCGGTTCGTCCCGCGGTCCCGACTGAAGAATGAGGATGGACAGGAATGAGGAAGAGATGGTCACGAATGACTCGGACCCTCTTCTCAAGAGGGAAAACGAGGAGGCAGAGTCATCGTCGCAGCTGACACCGCCTAAGCCAGCAACCTTGAGCGCGCTGGAGATTGAGGATGAGGAGACCGACGGTTCTTCTGCAGGGTGCTGCCGCATTTGTCTCGAGACTGATTCTGAGTTAGGTGATGAACTGATATCACCTTGCATGTGCAAGGGAACTCAACAATTTGTTCACCGCTCATGCCTTGACCACTGGAGATCTGTTAAGGAAGGATTTGCATTTTCACATTGCACAACATGCAAAGCTCAATTCCATCTCCGAGTGGAAACTTGGGAGGACAATTCATGGCGTAAAATGAAGTTCCGGATATTTGTTGCAAGAGATGTTATCCTTGTGTTTCTTGCTGTACAACTTACTATTGCTATGATTGGTGCAATTTCTTACTTTCTAGATAGGGATGGAAGTTTCAGAAACAGTTTCAGTGATGGTTGGGATCGCTTCTTGTCAAAACATCCAATACCATTCTATTACTGCATAGGTGTTGTTGTTTTCTTTGTGCTACTCGGATTCTTCGGGTTGATACTGCATTGTTCGTCCTTCAATGATAACCAAGACCCATGCCTAGCTGGGTGCCGGAACTGCTGCTATGGTTGGGGCGTCCTGGACTGCCTGCCTGCTTCTCTGGAGGCCTGCTTTGCCCTGGTGGTGGTTTTC GTTGTC GTGTTCGCCATCCTCGGTATCGCATACGGTTTCCTCGCGGC AACTATGGCTGTCCAAAGAATCTGGCAGCGGCATTACCACATCTTGACCAAAAGAGAACTCACAAAGGAGTACGTGGTGGAAGATCTTCATGGCAGCTACACGCCACCGAAGCTTGATCCAGAGCATGAGGAGCGGCTGAAAATGCTGAAGCTCCTCTAGCCTCTCATGGCAATTACAGAACTACTACCGCCTGTATATCTGCTCCTCCTCTTTCGCTTCAGATTAACAAACGGCAATCTGTTGTACACCAGTGTAAATATTGAGTACGTGTGCCGAAACAAAATGTCTCGGGTGAGTGTTTGTTGTCAATTTAATTCGATCGATATGTTTACCTTGTCGCGTGAGTGTTCCTCGATCATACTGCTGCTGGAACTACACTATGAACAACTAGTAGTAATTTT ]
[+] EMBL AU174649 [ CCGGATATTTGTTGCAAGAGATGTTATCCTTGTGTTTCTTGCTGTACAACTTACTATTGCTATGATTGGTGCAATTTCTTACTTTCTAGATAGGGATGGAAGTTTCAGAAACAGTTTCAGTGATGGTTGGGATCGCTTCTTGTCAAAACATCCAATACCATTCTATTACTGCATAGGTGTTGTTGTTTTCTTTGTGCTACTCGGATTCTTCGGGTTGATACTGCATTGTTCGTCCTTCAATGATAACCAAGACCCATGCCTAGCTGGGTGCCGGAACTGCTGCTATGGTTGGGGCGTCCTGGACTGCCTGCCTGCTTCTCTGGAGGCCTGCTTTGCCCTGGTGGTGGTTTTC GTTGTC GTGTTCGCCATCCTCGGTATCGCATACGGTTTCCTC ]
[+] EMBL BE230718 [ cgagATGATTGGNGCAATTTCTTACTTTCTAGATAGGGATGGAAGTTTCAGAAACAGTTTCAGTGATGGTTGGGATCGCTTCTTGTCAAAACATCCAATACCATTCTATTACTGCATAGGTGTTGTTGTTTTCTTTGTGCTACTCGGATTCTTCGGGTTGATACTGCATTGTTCGTCCTTCAATGATAACCAAGACCCATGCCTAGCTGGGTGCCGGAACTGCTGCTATGGTTGGGGCGTCCTGGRCTGCCTGCCTGCTTCTCTGGAGGCCTGCTTTGCCCTGGTGGTGG TTTC GTTGTC GTGTTCG CATCCTYGGTATC ]
[+] EMBL BI811933 [ CTGGA GCCTGCTTTG CCTGGT GT GTTTTCAGTTGTCAGTGTTC CCATCCTCGGTATCGCATACGGTTTCCTC CGGCAAACTATGGCTGTCCAAAGAATCTGGCAGCGGCATTACCACATCTTGACC AAAGAGAACTCACAAAGGAGTACGTGGTGGAAGATCTTCATGGCAGCTACACGCCACCGAAGCTTGATCCAGAGCATGAGGAGCGGCTGAAAATGCTGAAGCTCCTCTAGCCTCTCATGGCAATTACAGAACTACTACCGCCTGTATATCTGCTCCTCCTCTTTCGCTTCAGATTAAC AACGGC ATCTGTTGTACACCAGTGTAAATATTGAGTACGTGTGCCGAAAC AAATGTCTCGGGTGAGTGTTTGCTGTCAATTTAATTCGATCGATATGTTTACCTTGTCGCGTGAGTGTTCCTCGATCATACTGCTGCTGGAACTACACTATGAACAACTAGTAGTAATTTTATCCTTGCGATCCCAAAAAAAA]
[+] EMBL AU174648 [ TTCGCCATCCTCGGTATCGCATACGGTTTCCTCGCGGC AACTATGGCTGTCCAAAGAATCTGGCAGCGGCATTACCACATCTTGACCAAAAGAGAACTCACAAAGGAGTACGTGGTGGAAGATCTTCATGGCAGCTACACGCCACCGAAGCTTGATCCAGAGCATGAGGAGCGGCTGAAAATGCTGAAGCTCCTCTAGCCTCTCATGGCAATTACAGAACTACTACCGCCTGTATATCTGCTCCTCCTCTTTCGCTTCAGATTAACAAACGGCAATCTGTTGTACACCAGTGTAAATATTGAGTACGTGTGCCGAAACAAAATGTCTCGGGTGAGTGTTTGTTGTCAATTTAATTCGATCGATATGTTTACCTTGTCGCGTGAGTGTTCCTCGATCATACTGCTGCTGGAACTACACTATGAACAACTAGTAGTAATTTTATCCTTGCAA AAAAAA ]
consensusID : consensus_9644#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 375 fasta sequence
[AGAGGGCGAGACAAGGGGTACGTGGTGGAAGATTTTCATGGCAGCTACCCCCCCCCGAAGCTTGATCCAGAGCCTGAGGAGCGGCTGAAAATGCTGAAGCTCCTCTAGCCTCTCATGGCAATTACAGAACTACTACCGCCCGGAAATTTGCTCCTCCTCTTTCGCTTTAGATTAACAAACGGCAATTTGTTGTACCCCAGTGTAAATATTGAGTACGTGTGCCGAAACAAAATGTTTTGGGTGAGTGTTTGCTGTCCATTTAATTCGATCGATATGTTTACCCTGTCGCGTGAGTGTTCCTCGATCATACTGCTGCTGGAACTACCCTATGAACAACTAGTAGTAATTTTATCCCTGAAAAAAAAAAAAAAAAAA]
[-] EMBL CA763298 [AGAGGGCGAGACAAGGGGTACGTGGTGGAAGATTTTCATGGCAGCTACCCCCCCCCGAAGCTTGATCCAGAGCCTGAGGAGCGGCTGAAAATGCTGAAGCTCCTCTAGCCTCTCATGGCAATTACAGAACTACTACCGCCCGGAAATTTGCTCCTCCTCTTTCGCTTTAGATTAACAAACGGCAATTTGTTGTACCCCAGTGTAAATATTGAGTACGTGTGCCGAAACAAAATGTTTTGGGTGAGTGTTTGCTGTCCATTTAATTCGATCGATATGTTTACCCTGTCGCGTGAGTGTTCCTCGATCATACTGCTGCTGGAACTACCCTATGAACAACTAGTAGTAATTTTATCCCTGAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9644#0 TCTCTCTCTCGCGTGGCTTCCTACCGAAATCTTCGAATCCATCGTCGTCGAGAAGAGACG 60
consensus_9644#1 ------------------------------------------------------------
consensus_9644#0 AGGACGCCCTCCCCAGTGGCGGCGAGCGCCCCCCCCCCCCACCCCCACCCCCGAGGAAGA 120
consensus_9644#1 ------------------------------------------------------------
consensus_9644#0 AGAAGAGGAGGAGGAAGGTTTTGCGCGCCGTTCGCGGATTCCTCTCCGTCCTCACGCCCC 180
consensus_9644#1 ------------------------------------------------------------
consensus_9644#0 GGATTCGGTTCGTCCCGCGGTCCCGACTGAAGAATGAGGATGGACAGGAATGAGGAAGAG 240
consensus_9644#1 ------------------------------------------------------------
consensus_9644#0 ATGGTCACGAATGACTCGGACCCTCTTCTCAAGAGGGAAAACGAGGAGGCAGAGTCATCG 300
consensus_9644#1 ------------------------------------------------------------
consensus_9644#0 TCGCAGCTGACACCGCCTAAGCCAGCAACCTTGAGCGCGCTGGAGATTGAGGATGAGGAG 360
consensus_9644#1 ------------------------------------------------------------
consensus_9644#0 ACCGACGGTTCTTCTGCAGGGTGCTGCCGCATTTGTCTCGAGACTGATTCTGAGTTAGGT 420
consensus_9644#1 ------------------------------------------------------------
consensus_9644#0 GATGAACTGATATCACCTTGCATGTGCAAGGGAACTCAACAATTTGTTCACCGCTCATGC 480
consensus_9644#1 ------------------------------------------------------------
consensus_9644#0 CTTGACCACTGGAGATCTGTTAAGGAAGGATTTGCATTTTCACATTGCACAACATGCAAA 540
consensus_9644#1 ------------------------------------------------------------
consensus_9644#0 GCTCAATTCCATCTCCGAGTGGAAACTTGGGAGGACAATTCATGGCGTAAAATGAAGTTC 600
consensus_9644#1 ------------------------------------------------------------
consensus_9644#0 CGGATATTTGTTGCAAGAGATGTTATCCTTGTGTTTCTTGCTGTACAACTTACTATTGCT 660
consensus_9644#1 ------------------------------------------------------------
consensus_9644#0 ATGATTGGTGCAATTTCTTACTTTCTAGATAGGGATGGAAGTTTCAGAAACAGTTTCAGT 720
consensus_9644#1 ------------------------------------------------------------
consensus_9644#0 GATGGTTGGGATCGCTTCTTGTCAAAACATCCAATACCATTCTATTACTGCATAGGTGTT 780
consensus_9644#1 ------------------------------------------------------------
consensus_9644#0 GTTGTTTTCTTTGTGCTACTCGGATTCTTCGGGTTGATACTGCATTGTTCGTCCTTCAAT 840
consensus_9644#1 ------------------------------------------------------------
consensus_9644#0 GATAACCAAGACCCATGCCTAGCTGGGTGCCGGAACTGCTGCTATGGTTGGGGCGTCCTG 900
consensus_9644#1 ------------------------------------------------------------
consensus_9644#0 GACTGCCTGCCTGCTTCTCTGGAGGCCTGCTTTGCCCTGGTGGTGGTTTTCGTTGTCGTG 960
consensus_9644#1 ------------------------------------------------------------
consensus_9644#0 TTCGCCATCCTCGGTATCGCATACGGTTTCCTCGCGGCAACTATGGCTGTCCAAAGAATC 1020
consensus_9644#1 ------------------------------------------------------------
consensus_9644#0 TGGCAGCGGCATTACCACATCTTGACCAAAAGAGAACTCACAAAGGAGTACGTGGTGGAA 1080
consensus_9644#1 ------------------------------AGAGGGCGAGACAAGGGGTACGTGGTGGAA 30
**** * **** *************
consensus_9644#0 GATCTTCATGGCAGCTACACGCCACCGAAGCTTGATCCAGAGCATGAGGAGCGGCTGAAA 1140
consensus_9644#1 GATTTTCATGGCAGCTACCCCCCCCCGAAGCTTGATCCAGAGCCTGAGGAGCGGCTGAAA 90
*** ************** * ** ******************* ****************
consensus_9644#0 ATGCTGAAGCTCCTCTAGCCTCTCATGGCAATTACAGAACTACTACCGCCTGTATATCTG 1200
consensus_9644#1 ATGCTGAAGCTCCTCTAGCCTCTCATGGCAATTACAGAACTACTACCGCCCGGAAATTTG 150
************************************************** * * ** **
consensus_9644#0 CTCCTCCTCTTTCGCTTCAGATTAACAAACGGCAATCTGTTGTACACCAGTGTAAATATT 1260
consensus_9644#1 CTCCTCCTCTTTCGCTTTAGATTAACAAACGGCAATTTGTTGTACCCCAGTGTAAATATT 210
***************** ****************** ******** **************
consensus_9644#0 GAGTACGTGTGCCGAAACAAAATGTCTCGGGTGAGTGTTTGTTGTCAATTTAATTCGATC 1320
consensus_9644#1 GAGTACGTGTGCCGAAACAAAATGTTTTGGGTGAGTGTTTGCTGTCCATTTAATTCGATC 270
************************* * ************* **** *************
consensus_9644#0 GATATGTTTACCTTGTCGCGTGAGTGTTCCTCGATCATACTGCTGCTGGAACTACACTAT 1380
consensus_9644#1 GATATGTTTACCCTGTCGCGTGAGTGTTCCTCGATCATACTGCTGCTGGAACTACCCTAT 330
************ ****************************************** ****
consensus_9644#0 GAACAACTAGTAGTAATTTTATCCTTGCGAAAAAAAAA------- 1418
consensus_9644#1 GAACAACTAGTAGTAATTTTATCCCTGAAAAAAAAAAAAAAAAAA 375
************************ ** *********
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||