These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9644#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1418 fasta sequence [TCTCTCTCTCGCGTGGCTTCCTACCGAAATCTTCGAATCCATCGTCGTCGAGAAGAGACGAGGACGCCCTCCCCAGTGGCGGCGAGCGCCCCCCCCCCCCACCCCCACCCCCGAGGAAGAAGAAGAGGAGGAGGAAGGTTTTGCGCGCCGTTCGCGGATTCCTCTCCGTCCTCACGCCCCGGATTCGGTTCGTCCCGCGGTCCCGACTGAAGAATGAGGATGGACAGGAATGAGGAAGAGATGGTCACGAATGACTCGGACCCTCTTCTCAAGAGGGAAAACGAGGAGGCAGAGTCATCGTCGCAGCTGACACCGCCTAAGCCAGCAACCTTGAGCGCGCTGGAGATTGAGGATGAGGAGACCGACGGTTCTTCTGCAGGGTGCTGCCGCATTTGTCTCGAGACTGATTCTGAGTTAGGTGATGAACTGATATCACCTTGCATGTGCAAGGGAACTCAACAATTTGTTCACCGCTCATGCCTTGACCACTGGAGATCTGTTAAGGAAGGATTTGCATTTTCACATTGCACAACATGCAAAGCTCAATTCCATCTCCGAGTGGAAACTTGGGAGGACAATTCATGGCGTAAAATGAAGTTCCGGATATTTGTTGCAAGAGATGTTATCCTTGTGTTTCTTGCTGTACAACTTACTATTGCTATGATTGGTGCAATTTCTTACTTTCTAGATAGGGATGGAAGTTTCAGAAACAGTTTCAGTGATGGTTGGGATCGCTTCTTGTCAAAACATCCAATACCATTCTATTACTGCATAGGTGTTGTTGTTTTCTTTGTGCTACTCGGATTCTTCGGGTTGATACTGCATTGTTCGTCCTTCAATGATAACCAAGACCCATGCCTAGCTGGGTGCCGGAACTGCTGCTATGGTTGGGGCGTCCTGGACTGCCTGCCTGCTTCTCTGGAGGCCTGCTTTGCCCTGGTGGTGGTTTTC-GTTGTC-GTGTTCGCCATCCTCGGTATCGCATACGGTTTCCTCGCGGC-AACTATGGCTGTCCAAAGAATCTGGCAGCGGCATTACCACATCTTGACCAAAAGAGAACTCACAAAGGAGTACGTGGTGGAAGATCTTCATGGCAGCTACACGCCACCGAAGCTTGATCCAGAGCATGAGGAGCGGCTGAAAATGCTGAAGCTCCTCTAGCCTCTCATGGCAATTACAGAACTACTACCGCCTGTATATCTGCTCCTCCTCTTTCGCTTCAGATTAACAAACGGCAATCTGTTGTACACCAGTGTAAATATTGAGTACGTGTGCCGAAACAAAATGTCTCGGGTGAGTGTTTGTTGTCAATTTAATTCGATCGATATGTTTACCTTGTCGCGTGAGTGTTCCTCGATCATACTGCTGCTGGAACTACACTATGAACAACTAGTAGTAATTTTATCCTTGCGA----AAAAAAAA] [+] EMBL AK072915 [TCTCTCTCTCGCGTGGCTTCCTACCGAAATCTTCGAATCCATCGTCGTCGAGAAGAGACGAGGACGCCCTCCCCAGTGGCGGCGAGCGCCCCCCCCCCCCACCCCCACCCCCGAGGAAGAAGAAGAGGAGGAGGAAGGTTTTGCGCGCCGTTCGCGGATTCCTCTCCGTCCTCACGCCCCGGATTCGGTTCGTCCCGCGGTCCCGACTGAAGAATGAGGATGGACAGGAATGAGGAAGAGATGGTCACGAATGACTCGGACCCTCTTCTCAAGAGGGAAAACGAGGAGGCAGAGTCATCGTCGCAGCTGACACCGCCTAAGCCAGCAACCTTGAGCGCGCTGGAGATTGAGGATGAGGAGACCGACGGTTCTTCTGCAGGGTGCTGCCGCATTTGTCTCGAGACTGATTCTGAGTTAGGTGATGAACTGATATCACCTTGCATGTGCAAGGGAACTCAACAATTTGTTCACCGCTCATGCCTTGACCACTGGAGATCTGTTAAGGAAGGATTTGCATTTTCACATTGCACAACATGCAAAGCTCAATTCCATCTCCGAGTGGAAACTTGGGAGGACAATTCATGGCGTAAAATGAAGTTCCGGATATTTGTTGCAAGAGATGTTATCCTTGTGTTTCTTGCTGTACAACTTACTATTGCTATGATTGGTGCAATTTCTTACTTTCTAGATAGGGATGGAAGTTTCAGAAACAGTTTCAGTGATGGTTGGGATCGCTTCTTGTCAAAACATCCAATACCATTCTATTACTGCATAGGTGTTGTTGTTTTCTTTGTGCTACTCGGATTCTTCGGGTTGATACTGCATTGTTCGTCCTTCAATGATAACCAAGACCCATGCCTAGCTGGGTGCCGGAACTGCTGCTATGGTTGGGGCGTCCTGGACTGCCTGCCTGCTTCTCTGGAGGCCTGCTTTGCCCTGGTGGTGGTTTTC GTTGTC GTGTTCGCCATCCTCGGTATCGCATACGGTTTCCTCGCGGC AACTATGGCTGTCCAAAGAATCTGGCAGCGGCATTACCACATCTTGACCAAAAGAGAACTCACAAAGGAGTACGTGGTGGAAGATCTTCATGGCAGCTACACGCCACCGAAGCTTGATCCAGAGCATGAGGAGCGGCTGAAAATGCTGAAGCTCCTCTAGCCTCTCATGGCAATTACAGAACTACTACCGCCTGTATATCTGCTCCTCCTCTTTCGCTTCAGATTAACAAACGGCAATCTGTTGTACACCAGTGTAAATATTGAGTACGTGTGCCGAAACAAAATGTCTCGGGTGAGTGTTTGTTGTCAATTTAATTCGATCGATATGTTTACCTTGTCGCGTGAGTGTTCCTCGATCATACTGCTGCTGGAACTACACTATGAACAACTAGTAGTAATTTT ] [+] EMBL AU174649 [ CCGGATATTTGTTGCAAGAGATGTTATCCTTGTGTTTCTTGCTGTACAACTTACTATTGCTATGATTGGTGCAATTTCTTACTTTCTAGATAGGGATGGAAGTTTCAGAAACAGTTTCAGTGATGGTTGGGATCGCTTCTTGTCAAAACATCCAATACCATTCTATTACTGCATAGGTGTTGTTGTTTTCTTTGTGCTACTCGGATTCTTCGGGTTGATACTGCATTGTTCGTCCTTCAATGATAACCAAGACCCATGCCTAGCTGGGTGCCGGAACTGCTGCTATGGTTGGGGCGTCCTGGACTGCCTGCCTGCTTCTCTGGAGGCCTGCTTTGCCCTGGTGGTGGTTTTC GTTGTC GTGTTCGCCATCCTCGGTATCGCATACGGTTTCCTC ] [+] EMBL BE230718 [ cgagATGATTGGNGCAATTTCTTACTTTCTAGATAGGGATGGAAGTTTCAGAAACAGTTTCAGTGATGGTTGGGATCGCTTCTTGTCAAAACATCCAATACCATTCTATTACTGCATAGGTGTTGTTGTTTTCTTTGTGCTACTCGGATTCTTCGGGTTGATACTGCATTGTTCGTCCTTCAATGATAACCAAGACCCATGCCTAGCTGGGTGCCGGAACTGCTGCTATGGTTGGGGCGTCCTGGRCTGCCTGCCTGCTTCTCTGGAGGCCTGCTTTGCCCTGGTGGTGG TTTC GTTGTC GTGTTCG CATCCTYGGTATC ] [+] EMBL BI811933 [ CTGGA GCCTGCTTTG CCTGGT GT GTTTTCAGTTGTCAGTGTTC CCATCCTCGGTATCGCATACGGTTTCCTC CGGCAAACTATGGCTGTCCAAAGAATCTGGCAGCGGCATTACCACATCTTGACC AAAGAGAACTCACAAAGGAGTACGTGGTGGAAGATCTTCATGGCAGCTACACGCCACCGAAGCTTGATCCAGAGCATGAGGAGCGGCTGAAAATGCTGAAGCTCCTCTAGCCTCTCATGGCAATTACAGAACTACTACCGCCTGTATATCTGCTCCTCCTCTTTCGCTTCAGATTAAC AACGGC ATCTGTTGTACACCAGTGTAAATATTGAGTACGTGTGCCGAAAC AAATGTCTCGGGTGAGTGTTTGCTGTCAATTTAATTCGATCGATATGTTTACCTTGTCGCGTGAGTGTTCCTCGATCATACTGCTGCTGGAACTACACTATGAACAACTAGTAGTAATTTTATCCTTGCGATCCCAAAAAAAA] [+] EMBL AU174648 [ TTCGCCATCCTCGGTATCGCATACGGTTTCCTCGCGGC AACTATGGCTGTCCAAAGAATCTGGCAGCGGCATTACCACATCTTGACCAAAAGAGAACTCACAAAGGAGTACGTGGTGGAAGATCTTCATGGCAGCTACACGCCACCGAAGCTTGATCCAGAGCATGAGGAGCGGCTGAAAATGCTGAAGCTCCTCTAGCCTCTCATGGCAATTACAGAACTACTACCGCCTGTATATCTGCTCCTCCTCTTTCGCTTCAGATTAACAAACGGCAATCTGTTGTACACCAGTGTAAATATTGAGTACGTGTGCCGAAACAAAATGTCTCGGGTGAGTGTTTGTTGTCAATTTAATTCGATCGATATGTTTACCTTGTCGCGTGAGTGTTCCTCGATCATACTGCTGCTGGAACTACACTATGAACAACTAGTAGTAATTTTATCCTTGCAA AAAAAA ] consensusID : consensus_9644#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 375 fasta sequence [AGAGGGCGAGACAAGGGGTACGTGGTGGAAGATTTTCATGGCAGCTACCCCCCCCCGAAGCTTGATCCAGAGCCTGAGGAGCGGCTGAAAATGCTGAAGCTCCTCTAGCCTCTCATGGCAATTACAGAACTACTACCGCCCGGAAATTTGCTCCTCCTCTTTCGCTTTAGATTAACAAACGGCAATTTGTTGTACCCCAGTGTAAATATTGAGTACGTGTGCCGAAACAAAATGTTTTGGGTGAGTGTTTGCTGTCCATTTAATTCGATCGATATGTTTACCCTGTCGCGTGAGTGTTCCTCGATCATACTGCTGCTGGAACTACCCTATGAACAACTAGTAGTAATTTTATCCCTGAAAAAAAAAAAAAAAAAA] [-] EMBL CA763298 [AGAGGGCGAGACAAGGGGTACGTGGTGGAAGATTTTCATGGCAGCTACCCCCCCCCGAAGCTTGATCCAGAGCCTGAGGAGCGGCTGAAAATGCTGAAGCTCCTCTAGCCTCTCATGGCAATTACAGAACTACTACCGCCCGGAAATTTGCTCCTCCTCTTTCGCTTTAGATTAACAAACGGCAATTTGTTGTACCCCAGTGTAAATATTGAGTACGTGTGCCGAAACAAAATGTTTTGGGTGAGTGTTTGCTGTCCATTTAATTCGATCGATATGTTTACCCTGTCGCGTGAGTGTTCCTCGATCATACTGCTGCTGGAACTACCCTATGAACAACTAGTAGTAATTTTATCCCTGAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9644#0 TCTCTCTCTCGCGTGGCTTCCTACCGAAATCTTCGAATCCATCGTCGTCGAGAAGAGACG 60 consensus_9644#1 ------------------------------------------------------------ consensus_9644#0 AGGACGCCCTCCCCAGTGGCGGCGAGCGCCCCCCCCCCCCACCCCCACCCCCGAGGAAGA 120 consensus_9644#1 ------------------------------------------------------------ consensus_9644#0 AGAAGAGGAGGAGGAAGGTTTTGCGCGCCGTTCGCGGATTCCTCTCCGTCCTCACGCCCC 180 consensus_9644#1 ------------------------------------------------------------ consensus_9644#0 GGATTCGGTTCGTCCCGCGGTCCCGACTGAAGAATGAGGATGGACAGGAATGAGGAAGAG 240 consensus_9644#1 ------------------------------------------------------------ consensus_9644#0 ATGGTCACGAATGACTCGGACCCTCTTCTCAAGAGGGAAAACGAGGAGGCAGAGTCATCG 300 consensus_9644#1 ------------------------------------------------------------ consensus_9644#0 TCGCAGCTGACACCGCCTAAGCCAGCAACCTTGAGCGCGCTGGAGATTGAGGATGAGGAG 360 consensus_9644#1 ------------------------------------------------------------ consensus_9644#0 ACCGACGGTTCTTCTGCAGGGTGCTGCCGCATTTGTCTCGAGACTGATTCTGAGTTAGGT 420 consensus_9644#1 ------------------------------------------------------------ consensus_9644#0 GATGAACTGATATCACCTTGCATGTGCAAGGGAACTCAACAATTTGTTCACCGCTCATGC 480 consensus_9644#1 ------------------------------------------------------------ consensus_9644#0 CTTGACCACTGGAGATCTGTTAAGGAAGGATTTGCATTTTCACATTGCACAACATGCAAA 540 consensus_9644#1 ------------------------------------------------------------ consensus_9644#0 GCTCAATTCCATCTCCGAGTGGAAACTTGGGAGGACAATTCATGGCGTAAAATGAAGTTC 600 consensus_9644#1 ------------------------------------------------------------ consensus_9644#0 CGGATATTTGTTGCAAGAGATGTTATCCTTGTGTTTCTTGCTGTACAACTTACTATTGCT 660 consensus_9644#1 ------------------------------------------------------------ consensus_9644#0 ATGATTGGTGCAATTTCTTACTTTCTAGATAGGGATGGAAGTTTCAGAAACAGTTTCAGT 720 consensus_9644#1 ------------------------------------------------------------ consensus_9644#0 GATGGTTGGGATCGCTTCTTGTCAAAACATCCAATACCATTCTATTACTGCATAGGTGTT 780 consensus_9644#1 ------------------------------------------------------------ consensus_9644#0 GTTGTTTTCTTTGTGCTACTCGGATTCTTCGGGTTGATACTGCATTGTTCGTCCTTCAAT 840 consensus_9644#1 ------------------------------------------------------------ consensus_9644#0 GATAACCAAGACCCATGCCTAGCTGGGTGCCGGAACTGCTGCTATGGTTGGGGCGTCCTG 900 consensus_9644#1 ------------------------------------------------------------ consensus_9644#0 GACTGCCTGCCTGCTTCTCTGGAGGCCTGCTTTGCCCTGGTGGTGGTTTTCGTTGTCGTG 960 consensus_9644#1 ------------------------------------------------------------ consensus_9644#0 TTCGCCATCCTCGGTATCGCATACGGTTTCCTCGCGGCAACTATGGCTGTCCAAAGAATC 1020 consensus_9644#1 ------------------------------------------------------------ consensus_9644#0 TGGCAGCGGCATTACCACATCTTGACCAAAAGAGAACTCACAAAGGAGTACGTGGTGGAA 1080 consensus_9644#1 ------------------------------AGAGGGCGAGACAAGGGGTACGTGGTGGAA 30 **** * **** ************* consensus_9644#0 GATCTTCATGGCAGCTACACGCCACCGAAGCTTGATCCAGAGCATGAGGAGCGGCTGAAA 1140 consensus_9644#1 GATTTTCATGGCAGCTACCCCCCCCCGAAGCTTGATCCAGAGCCTGAGGAGCGGCTGAAA 90 *** ************** * ** ******************* **************** consensus_9644#0 ATGCTGAAGCTCCTCTAGCCTCTCATGGCAATTACAGAACTACTACCGCCTGTATATCTG 1200 consensus_9644#1 ATGCTGAAGCTCCTCTAGCCTCTCATGGCAATTACAGAACTACTACCGCCCGGAAATTTG 150 ************************************************** * * ** ** consensus_9644#0 CTCCTCCTCTTTCGCTTCAGATTAACAAACGGCAATCTGTTGTACACCAGTGTAAATATT 1260 consensus_9644#1 CTCCTCCTCTTTCGCTTTAGATTAACAAACGGCAATTTGTTGTACCCCAGTGTAAATATT 210 ***************** ****************** ******** ************** consensus_9644#0 GAGTACGTGTGCCGAAACAAAATGTCTCGGGTGAGTGTTTGTTGTCAATTTAATTCGATC 1320 consensus_9644#1 GAGTACGTGTGCCGAAACAAAATGTTTTGGGTGAGTGTTTGCTGTCCATTTAATTCGATC 270 ************************* * ************* **** ************* consensus_9644#0 GATATGTTTACCTTGTCGCGTGAGTGTTCCTCGATCATACTGCTGCTGGAACTACACTAT 1380 consensus_9644#1 GATATGTTTACCCTGTCGCGTGAGTGTTCCTCGATCATACTGCTGCTGGAACTACCCTAT 330 ************ ****************************************** **** consensus_9644#0 GAACAACTAGTAGTAATTTTATCCTTGCGAAAAAAAAA------- 1418 consensus_9644#1 GAACAACTAGTAGTAATTTTATCCCTGAAAAAAAAAAAAAAAAAA 375 ************************ ** ********* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||