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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9647#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1920 fasta sequence
[CGGCGCTGCTGTACCTCGCCGTCGCGGTCCGGCGCGGCCGCGGCGCCGGCCTGCCGCCGGGTCCGACGGGGCTGCCGCTCGTCGGCAGCTTGCTGTCCCTCGACCCGGAGCTGCACACCTACTTCGCCGGCCTCGCCGCCAGGTACGGCCCCATCTTCTCTATCCGCCTCGGCTCCAAGCTCGGCGTCGTCGTCACCTCGCCGGCGCTGGCGCGGGAGGTGCTGCGCGACCACGACCTCGTCTTCTCCAACCGCGACACGCCCGACGCCGCGTGCTCCATCTCCTACGGCGGCGGGCAGAACATCGTGTGGAACCCGGTCGGCCCCACGTGGCGCCTCCTCCGCCGCATCTGCGTCCACGAGATGATCGGCCCCGCCGGCCTCGACAGCCTCCACGGCCTCCGCCGCCGGGAGTTCATGGCCACGCTCCACCACCTGCGCGCGCGGTCCGGCGAGCCCGTCAACGTCGGCGCGCAGATGTTCCTCACCGTGATGAACGTGGTGACCGGCGCGCTGTGGGGCGGCAACGTCGGCAGCGAGAGCGAGCGGACGACGGTGGGGAAGGAGTTCCGGGAGCTCGTCGCCGACATCACCGAGTTGCTCGGCGCGCCCAACGTGTCCGACTTCTTCCCGGCGCTGGCGCCGCTCGACATCCAGGGCATCCGCAACAAGTCCGACCTGCTCGAGGACCGCTTCGACGACATCTTCGCCAGGATCATCCAGAAGAGGACCGAGTCCGACCATGCCGCCGCCGCCGGCGAGACGGCGTCGGACTTCCTCGAGTACATGCTCAAGCTGGAGAAGGAAGGCGGCGACGGGAAGACCGCCTTCACCATGACCAACGTCAAGGCCCTGCTCATGGACATGGTGATCGGGGGGACGGAGACGACGTCGAACACCGTGGAATGGGGCATGGCGGAGATGCTCCAGAACAGGGGGACGCTGCGCAAGGTGCGGGAGGAGCTCGACGCGGTGGTGGGGCGCGACGGCGTGGTGGAGGAGAGCCACCTCCCGAAGCTGCACTACCTGAATCTGGTGGTCAAGGAGACGCTCCGGCTGCACCCGGCGCTGCCGCTGATGGTGCCGCACTGCCCCGGCGAGGACGCCACGGTGGGCGGCCACCGCGTCCCGGCGGGCGCCCGGGTGTTCGTCAACGTGTGGGCGATCCAGAGGGACCCGGCGGTGTGGAAGGACCCGGAACACTTCATCCCGGAGAGGTTCTTGCCGGCGGACGGCGGCGGAGGGCGGAGGCTGGACTTCACCGGGAGCGAGCAGGAGTACATGCCGTTCGGGTCCGGGAGGAGGATCTGCGCCGGCGTCGCCATGGCGGAGCGGATGGTGGCCTACTCGCTGGCGATGCTGGTGCAGGCGTTCGACTGGGAGCTGCCGGCCGGCGAGCGGCTGGACCTCGCCGAGCGGTTCGGCATCGTGATGAAGAAGGCCACGCCGCTGGTCGCCGTGCCCACGCCGA-GGCTCTCCAACCCTCAGCTCTACTCCGCCTAGATACCAAAGGTTTTAAATCTCGGGCTATAATTGTAGCTAGCTATTCGAAAATGATCTAGCTATTTACTCTCATATGCATTTTAGCTGTTATTTACCGTTTGAGATAATCTACCACAAAATATCTTAGTCTGCTATTTAAAACACTGCTAGATGCTGATGTCACTCCATCAATCAAATACACTCAAGTCAAATGTTAGTGAGAGTTCAGTTATGTTCGGCTCTGTTCATCGGCACGAAACAATTTTTCCGAGCTGGTGTGTTAGCTGGAGAATGTCCATCTATGCTTTCATCTAGGAATGTATACTTAATATATTTTCAGCTAAATATGTATGAAAAGATAATGATATATACTACAAATATTGTGTGTATTGCCGATAAATAAAGGATGGAGATAGAAATTTAAAAAAAAAAAAAAAAA]
[+] EMBL AK103567 [CGGCGCTGCTGTACCTCGCCGTCGCGGTCCGGCGCGGCCGCGGCGCCGGCCTGCCGCCGGGTCCGACGGGGCTGCCGCTCGTCGGCAGCTTGCTGTCCCTCGACCCGGAGCTGCACACCTACTTCGCCGGCCTCGCCGCCAGGTACGGCCCCATCTTCTCTATCCGCCTCGGCTCCAAGCTCGGCGTCGTCGTCACCTCGCCGGCGCTGGCGCGGGAGGTGCTGCGCGACCACGACCTCGTCTTCTCCAACCGCGACACGCCCGACGCCGCGTGCTCCATCTCCTACGGCGGCGGGCAGAACATCGTGTGGAACCCGGTCGGCCCCACGTGGCGCCTCCTCCGCCGCATCTGCGTCCACGAGATGATCGGCCCCGCCGGCCTCGACAGCCTCCACGGCCTCCGCCGCCGGGAGTTCATGGCCACGCTCCACCACCTGCGCGCGCGGTCCGGCGAGCCCGTCAACGTCGGCGCGCAGATGTTCCTCACCGTGATGAACGTGGTGACCGGCGCGCTGTGGGGCGGCAACGTCGGCAGCGAGAGCGAGCGGACGACGGTGGGGAAGGAGTTCCGGGAGCTCGTCGCCGACATCACCGAGTTGCTCGGCGCGCCCAACGTGTCCGACTTCTTCCCGGCGCTGGCGCCGCTCGACATCCAGGGCATCCGCAACAAGTCCGACCTGCTCGAGGACCGCTTCGACGACATCTTCGCCAGGATCATCCAGAAGAGGACCGAGTCCGACCATGCCGCCGCCGCCGGCGAGACGGCGTCGGACTTCCTCGAGTACATGCTCAAGCTGGAGAAGGAAGGCGGCGACGGGAAGACCGCCTTCACCATGACCAACGTCAAGGCCCTGCTCATGGACATGGTGATCGGGGGGACGGAGACGACGTCGAACACCGTGGAATGGGGCATGGCGGAGATGCTCCAGAACAGGGGGACGCTGCGCAAGGTGCGGGAGGAGCTCGACGCGGTGGTGGGGCGCGACGGCGTGGTGGAGGAGAGCCACCTCCCGAAGCTGCACTACCTGAATCTGGTGGTCAAGGAGACGCTCCGGCTGCACCCGGCGCTGCCGCTGATGGTGCCGCACTGCCCCGGCGAGGACGCCACGGTGGGCGGCCACCGCGTCCCGGCGGGCGCCCGGGTGTTCGTCAACGTGTGGGCGATCCAGAGGGACCCGGCGGTGTGGAAGGACCCGGAACACTTCATCCCGGAGAGGTTCTTGCCGGCGGACGGCGGCGGAGGGCGGAGGCTGGACTTCACCGGGAGCGAGCAGGAGTACATGCCGTTCGGGTCCGGGAGGAGGATCTGCGCCGGCGTCGCCATGGCGGAGCGGATGGTGGCCTACTCGCTGGCGATGCTGGTGCAGGCGTTCGACTGGGAGCTGCCGGCCGGCGAGCGGCTGGACCTCGCCGAGCGGTTCGGCATCGTGATGAAGAAGGCCACGCCGCTGGTCGCCGTGCCCACGCCGA GGCTCTCCAACCCTCAGCTCTACTCCGCCTAGATACCAAAGGTTTTAAATCTCGGGCTATAATTGTAGCTAGCTATTCGAAAATGATCTAGCTATTTACTCTCATATGCATTTTAGCTGTTATTTACCGTTTGAGATAATCTACCACAAAATATCTTAGTCTGCTATTTAAAACACTGCTAGATGCTGATGTCACTCCATCAATCAAATACACTCAAGTCAAATGTTAGTGAGAGTTCAGTTATGTTCGGCTCTGTTCATCGGCACGAAACAATTTTTCCGAGCTGGTGTGTTAGCTGGAGAATGTCCATCTATGCTTTCATCTAGGAATGTATACTTAATATATTTTCAGCTAAATATGTATGAAAAGATAATGATATATACTACAAATATTGTGTGTATTGCCGATAAATAAAGGATGGAGATAGAA ]
[+] EMBL CB623266 [ TCGCGGTCCGGCGCGGCCGCGGCGCCGGCCTGCCGCCGGGTCCGACGGGGCTGCCGCTCGTCGGCAGCTTGCTGTCCCTCGACCCGGAGCTGCACACCTACTTCGCCGGCCTCGCCGCCAGGTACGGCCCCATCTTCTCTATCCGCCTCGGCTCCAAGCTCGGCGTCGTCGTCACCTCGCCGGCGCTGGCGCGGGAGGTGCTGCGCGACCACGACCTCGTCTTCTCCAACCGCGACACGCCCGACGCCGCGTGCTCCATCTCCTACGGCGGCGGGCAGAACATCGTGTGGAACCCGGTCGGCCCCACGTGGCGCCTCCTCCGCCGCATCTGCGTCCACGAGATGATCGGCCCCGCCGGCCTCGACAGCCTCCACGGCCTCCGCCGCCGGGAGTTCATGGCCACGCTCCGCCACCTGCGCGCGCGGTCCGGCGAGCCCGTCGACGTCGGCGCGCAGATGTTCCTCACCGTGATGAACGTGGTGACCGGCGCGCTGTGGGGCGGCAACGTCGGCAGCGAGAGCGAGCGGACGACGGTGGGGAAGGAGTTCCGGGAGCTCGTCGCCGACATCACCGAGTTGCTCGGCGCGCCCAACGTGTCCGACTTCTTCCCGGCGCTGGCGCCGCTCGACATCCAGGGCATCCGCAACAAGTCCGACCTGCTCAAGGACCGCTTCGACGACATCTTCGCCAGGATCATCCAGAAGAGGACCGAGTCCGACCATGCCGCCGCCGCCGGCGAGACGGCGTCGGACTTCCTCGAGTACA ]
[+] EMBL AU174693 [ CGTCGCCATGGCGGAGCGGATGGTGGCCTACTCGCTGGCGATGCTGGTGCAGGCGTTCGACTGGGAGCTGCCGGCCGGCGAGCGGCTGGACCTCGCCGAGCGGTTCGGCATCGTGATGAAGAAGGCCACGCCGCTGGTCGCCGTGCCCACGCCGA GGCTCTCCAACCCTCAGCTCTACTCCGCCTAGATACCAAAGGTTTTAAATCTCGGGCTATAATTGTAGCTAGCTATTCGAAAATGATCTAGCTATTTACTCTCATATGCATTTTAGCTGTTATTTACCGTTTGAGATAATCTACCACAAAATATCTTAGTCTGCTATTTAAAACACTGCTAGATGCTGATGTCACTCCATCAATCAAATACACTCAAGTCAAATGTTAGTGAGAGTTC ]
[+] EMBL AU174692 [ GCCACGCCGCTGGTCGCCGTGCCCACGCCGAGGGCTCTCCAACCCTCAGCTCTACTCCGCCTAGATACCAAAGGTTTTAAATCTCGGGCTATAATTGTAGCTAGCTATTCGAAAATGATCTAGCTATTTACTCTCATATGCATTTTAGCTGTTATTTACCGTTTGAGATAATCTACCACAAAATATCTTAGTCTGCTATTTAAAACACTGCTAGATGCTGATGTCACTCCATCAATCAAATACACTCAAGTCAAATGTTAGTGAGAGTTCAGTTATGTTCGGCTCTGTTCATCGGCACGAAACAATTTTTCCGAGCTGGTGTGTTAGCTGGAGAATGTCCATCTATGCTTTCATCTAGGAATGTATACTTAATATATTTTCAGCTAAATATGTATGAAAAGATAATGATATATACTACAAATATTGTGTGTATTGCCGATAAATAAAGGATGGAGATAGAAATTTAAAAAAAA ]
[+] EMBL BI801232 [ CTGTTCATCGGCACGAAACAATTTTTCCGAGCTGGTGTGTTAGCTGGAGAATGTCCATCTATGCTTTCATCTAGGAATGTATACTTAATATATTTTCAGCTAAATATGTATGAAAAGATAATGATATATACTACACATATTGTGTGTATTGCCGATAAATAAAGGATGGAGATAGAAATTTACACCCCAAAAAAAAAA]
consensusID : consensus_9647#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 484 fasta sequence
[ACGGGAGCGACAGGANTACNTGCCGNTCGGGTCCGGGAAGAAGATCTGCNCNGGCGTCCCNTGGCGGAACGGATGGTGGCCTACTCNCTGGCGATGCTGGTGCAAGCGTTCGACTGGGAACTGCCGGCCGGCGANCGGCTGGACCTCCCCCAACGGTTCGGCATCGTGATGAAAAAAGGCACGCCGCTGGTCGCCGTGCCCACGCCGANGNTCTCCAACCTCAACTCTACTCCGCCTANATACCAANGTTTTAAATCTCCCGCTATAATTGTTNCCTACTNNNCCAANATGATCTAACTATTACNCNCNTNTGCANTTTAACTGTTATTTACCCGTTTGAAGATTATCTACACNAAATATCTTAATCTGCTATTTAAAACACTGCNNNATCTGATGTCCTCCATCCATCNAATNCCTCCAATGTTAATGAGAATCNATTATGTTCCGCTCTGTTCCTCNGCACNAAACAATTTTCCGAACTGGT]
[+] EMBL BE228457 [ACGGGAGCGACAGGANTACNTGCCGNTCGGGTCCGGGAAGAAGATCTGCNCNGGCGTCCCNTGGCGGAACGGATGGTGGCCTACTCNCTGGCGATGCTGGTGCAAGCGTTCGACTGGGAACTGCCGGCCGGCGANCGGCTGGACCTCCCCCAACGGTTCGGCATCGTGATGAAAAAAGGCACGCCGCTGGTCGCCGTGCCCACGCCGANGNTCTCCAACCTCAACTCTACTCCGCCTANATACCAANGTTTTAAATCTCCCGCTATAATTGTTNCCTACTNNNCCAANATGATCTAACTATTACNCNCNTNTGCANTTTAACTGTTATTTACCCGTTTGAAGATTATCTACACNAAATATCTTAATCTGCTATTTAAAACACTGCNNNATCTGATGTCCTCCATCCATCNAATNCCTCCAATGTTAATGAGAATCNATTATGTTCCGCTCTGTTCCTCNGCACNAAACAATTTTCCGAACTGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9647#0 CGGCGCTGCTGTACCTCGCCGTCGCGGTCCGGCGCGGCCGCGGCGCCGGCCTGCCGCCGG 60
consensus_9647#1 ------------------------------------------------------------
consensus_9647#0 GTCCGACGGGGCTGCCGCTCGTCGGCAGCTTGCTGTCCCTCGACCCGGAGCTGCACACCT 120
consensus_9647#1 ------------------------------------------------------------
consensus_9647#0 ACTTCGCCGGCCTCGCCGCCAGGTACGGCCCCATCTTCTCTATCCGCCTCGGCTCCAAGC 180
consensus_9647#1 ------------------------------------------------------------
consensus_9647#0 TCGGCGTCGTCGTCACCTCGCCGGCGCTGGCGCGGGAGGTGCTGCGCGACCACGACCTCG 240
consensus_9647#1 ------------------------------------------------------------
consensus_9647#0 TCTTCTCCAACCGCGACACGCCCGACGCCGCGTGCTCCATCTCCTACGGCGGCGGGCAGA 300
consensus_9647#1 ------------------------------------------------------------
consensus_9647#0 ACATCGTGTGGAACCCGGTCGGCCCCACGTGGCGCCTCCTCCGCCGCATCTGCGTCCACG 360
consensus_9647#1 ------------------------------------------------------------
consensus_9647#0 AGATGATCGGCCCCGCCGGCCTCGACAGCCTCCACGGCCTCCGCCGCCGGGAGTTCATGG 420
consensus_9647#1 ------------------------------------------------------------
consensus_9647#0 CCACGCTCCACCACCTGCGCGCGCGGTCCGGCGAGCCCGTCAACGTCGGCGCGCAGATGT 480
consensus_9647#1 ------------------------------------------------------------
consensus_9647#0 TCCTCACCGTGATGAACGTGGTGACCGGCGCGCTGTGGGGCGGCAACGTCGGCAGCGAGA 540
consensus_9647#1 ------------------------------------------------------------
consensus_9647#0 GCGAGCGGACGACGGTGGGGAAGGAGTTCCGGGAGCTCGTCGCCGACATCACCGAGTTGC 600
consensus_9647#1 ------------------------------------------------------------
consensus_9647#0 TCGGCGCGCCCAACGTGTCCGACTTCTTCCCGGCGCTGGCGCCGCTCGACATCCAGGGCA 660
consensus_9647#1 ------------------------------------------------------------
consensus_9647#0 TCCGCAACAAGTCCGACCTGCTCGAGGACCGCTTCGACGACATCTTCGCCAGGATCATCC 720
consensus_9647#1 ------------------------------------------------------------
consensus_9647#0 AGAAGAGGACCGAGTCCGACCATGCCGCCGCCGCCGGCGAGACGGCGTCGGACTTCCTCG 780
consensus_9647#1 ------------------------------------------------------------
consensus_9647#0 AGTACATGCTCAAGCTGGAGAAGGAAGGCGGCGACGGGAAGACCGCCTTCACCATGACCA 840
consensus_9647#1 ------------------------------------------------------------
consensus_9647#0 ACGTCAAGGCCCTGCTCATGGACATGGTGATCGGGGGGACGGAGACGACGTCGAACACCG 900
consensus_9647#1 ------------------------------------------------------------
consensus_9647#0 TGGAATGGGGCATGGCGGAGATGCTCCAGAACAGGGGGACGCTGCGCAAGGTGCGGGAGG 960
consensus_9647#1 ------------------------------------------------------------
consensus_9647#0 AGCTCGACGCGGTGGTGGGGCGCGACGGCGTGGTGGAGGAGAGCCACCTCCCGAAGCTGC 1020
consensus_9647#1 ------------------------------------------------------------
consensus_9647#0 ACTACCTGAATCTGGTGGTCAAGGAGACGCTCCGGCTGCACCCGGCGCTGCCGCTGATGG 1080
consensus_9647#1 ------------------------------------------------------------
consensus_9647#0 TGCCGCACTGCCCCGGCGAGGACGCCACGGTGGGCGGCCACCGCGTCCCGGCGGGCGCCC 1140
consensus_9647#1 ------------------------------------------------------------
consensus_9647#0 GGGTGTTCGTCAACGTGTGGGCGATCCAGAGGGACCCGGCGGTGTGGAAGGACCCGGAAC 1200
consensus_9647#1 ------------------------------------------------------------
consensus_9647#0 ACTTCATCCCGGAGAGGTTCTTGCCGGCGGACGGCGGCGGAGGGCGGAGGCTGGACTTCA 1260
consensus_9647#1 ------------------------------------------------------------
consensus_9647#0 CCGGGAGCGAGCAGGAGTACATGCCGTTCGGGTCCGGGAGGAGGATCTGCGCCGGCGTCG 1320
consensus_9647#1 ACGGGAGCGA-CAGGANTACNTGCCGNTCGGGTCCGGGAAGAAGATCTGCNCNGGCGTC- 58
********* ***** *** ***** ************ ** ******* * ******
consensus_9647#0 CCATGGCGGAGCGGATGGTGGCCTACTCGCTGGCGATGCTGGTGCAGGCGTTCGACTGGG 1380
consensus_9647#1 CCNTGGCGGAACGGATGGTGGCCTACTCNCTGGCGATGCTGGTGCAAGCGTTCGACTGGG 118
** ******* ***************** ***************** *************
consensus_9647#0 AGCTGCCGGCCGGCGAGCGGCTGGACCTCGCCGAGCGGTTCGGCATCGTGATGAAGAAGG 1440
consensus_9647#1 AACTGCCGGCCGGCGANCGGCTGGACCTCCCCCAACGGTTCGGCATCGTGATGAAAAAAG 178
* ************** ************ ** * ******************** ** *
consensus_9647#0 CCACGCCGCTGGTCGCCGTGCCCACGCCGAGGCTCTCCAACCCTCAGCTCTACTCCGCCT 1500
consensus_9647#1 GCACGCCGCTGGTCGCCGTGCCCACGCCGANGNTCTCCAACC-TCAACTCTACTCCGCCT 237
***************************** * ********* *** *************
consensus_9647#0 AGATACCAAAGGTTTTAAATCTCGGGCTATAATTGTAGCTAGCTATTCGAAAATGATCTA 1560
consensus_9647#1 ANATACCAANG-TTTTAAATCTCCCGCTATAATTGTTNCCTACTNNNCCAANATGATCTA 296
* ******* * *********** *********** * ** * ** ********
consensus_9647#0 GCTATTTACTCTCATATGCATTTTAGCTGTTATTTACC-GTTTGA-GATAATCTACCACA 1618
consensus_9647#1 ACTATT-ACNCNCNTNTGCANTTTAACTGTTATTTACCCGTTTGAAGATTATCTAC-ACN 354
***** ** * * * **** **** ************ ****** *** ****** **
consensus_9647#0 AAATATCTTAGTCTGCTATTTAAAACACTGCTAGATGCTGATGTCACTCCATCAATCAAA 1678
consensus_9647#1 AAATATCTTAATCTGCTATTTAAAACACTGCNNNAT-CTGATGTC-CTCCATCCATCNAA 412
********** ******************** ** ******** ******* *** **
consensus_9647#0 TACACTCAAGTCAAATGTTAGTGAGAGTTCAGTTATGTTCGGCTCTGTTCATCGGCACGA 1738
consensus_9647#1 TNCCTCCAA------TGTTAATGAGAAT-CNATTATGTTCCGCTCTGTTCCTCNGCACNA 465
* * *** ***** ***** * * ******** ********* ** **** *
consensus_9647#0 AACAATTTTTCCGAGCTGGTGTGTTAGCTGGAGAATGTCCATCTATGCTTTCATCTAGGA 1798
consensus_9647#1 AACAATTTT-CCGAACTGGT---------------------------------------- 484
********* **** *****
consensus_9647#0 ATGTATACTTAATATATTTTCAGCTAAATATGTATGAAAAGATAATGATATATACTACAA 1858
consensus_9647#1 ------------------------------------------------------------
consensus_9647#0 ATATTGTGTGTATTGCCGATAAATAAAGGATGGAGATAGAAATTTAAAAAAAAAAAAAAA 1918
consensus_9647#1 ------------------------------------------------------------
consensus_9647#0 AA 1920
consensus_9647#1 --
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||