These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9649#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1914 fasta sequence [TGCTATTCTTTTCCTGATCGCAGGTCATATGTATAGGACCAACTGGGGTATTGGTCATGGCCTGAAAGATATTTTGGAGGCTCATAAAGGCCCATTTACAGGACAGGGCCATAAAGGTCTCTATGAAATCCTAACAACGTCATGGCATGCTCAATTATCTCTTAACCTAGCTATGCTAGGCTCTACAACCATTGTTGTAGCTCATCATATGTACTCTATGCCCCCCTATCCATACCTAGCTACTGACTATGGTACACAACTTTCCTTGTTCACACACCACATGTGGATTGGCGGATTTCTAATAGTTGGTGCTGCTGCACATGCAGCCATTTTTATGGTAAGAGACTATGATCCAACGACTCGATACAACGATCTATTAGATCGTGTCCTTAGACACCGTGATGCAATCATATCCCACCTTAACTGGGTATGTATATTTCTAGGTTTTCACAGTTTTGGTTTATACATTCATAATGATACCATGAGTGCTTTAGGTCGTCCCCAAGATATGTTTTCGGATACCGCCATACAATTACAACCGATCTTTGCTCAATGGGTACAAAATCTCCATGCTGGCGCGCCTAGCGTAACAGCTCCTGGTGCAACAACAAGTACCAGCTTAACGTGGGGAGGTGGCGAGTTAGTAGCAGTACGCGGCAAAGTTGCTTTGTTACCTATTCCATTANGAACCGCAGATTTTTTAGTCCATCACATTCACGCATTTACAATCCATGTGACTGTATTAATACTTTTGAAAGGTGTTTTATTTGCTCGCAGGTCCCGTTTGATACCCGATAAAGCAAATCTTGGTTTTCGCTTCCCTTGCGATGGGCCTGGGCGAGGGGGAACATGTCAAGTATCCGCCTGGGATCATGTTTTCTTAGGTCTATTCTGGATGTACAATTCCATTTCGGTAGTCATTTTCCATTTCAGTTGGAAAATGCAGTCGGATGTTTGGGGTACTATAAGTGATCAAGGGGTGGTAACTCATATCACAGGGGGAAACTTTGCACAGAGTTCCATTACGATTAATGGGTGGCTCCGAGATTTCTTGTGGGCACAGGCATCCCAAGTAATTCAGTCTTATGGTTCTTCATTATCCGCATATGGTCTTTTTTTCTTAGGTGCTCATTTTGTCTGGGCCTTCAGTTTAATGTTTTTATTCAGCGGCCGTGGTTATTGGCAAGAACTGATTGAATCTATCGTTTGGGCTCATAACAAATTAAAAGTTGCTCCTGCTACTCAGCCTAGAGCCTTGAGCATTATACAAGGACGTGCTGTAGGAGTAACCCATTACCTTCTGGGTGGAATTGCCACAACATGGGCATTCTTCTTAGCGAGAATTATTGCAGTAGGATAGTGGCTAGGAGGATTTGAAAGGCATTATGGAATTAAGATTTCCCAGGTTTAGCCAAGGCTTAGCTCAGGACCCCACTACTCGTCGTATTTGGTTTGGTATTGCTACCACACATGATTTCGAAAGTCATGATGATATTACTGAGGAACGTCTTTATCAGAACATTTTTGCTTCTCACTTTGGGCAATTAGCAATAATCTTTCTATGGACGTCCGGAAATCTGTTTCATGTCGCTTGGCAAGGAAATTTTGAATCATGGATACAGGATCCTTTACACGTAAGACCTATTGCTCATGCGATTTGGGATCCTCATTTTGGTCAACCCGCTGTGGAAGCCTTTACTCGAGGAGGCACCACCGATTTCCACCTCTCCTACGACGACGCCGATGCCTAGCCGCTCACCCCTACCTACCTACCTTGTACGTATACCGTATACCACCACCGCCTGTATTCCTCTTTCTTTCTCATGTATGCTACTACTCCAGTTCACTAATAACGCCACGCCTACAAACAAATTACTGTAATACTAATCACCAATCATTTCAATAAATTCAGTC] [+] EMBL CB668269 [TGCTATTCTTTTCCTGATCGCAGGTCATATGTATAGGACCAACTGGGGTATTGGTCATGGCCTGAAAGATATTTTGGAGGCTCATAAAGGCCCATTTACAGGACAGGGCCATAAAGGTCTCTATGAAATCCTAACAACGTCATGGCATGCTCAATTATCTCTTAACCTAGCTATGCTAGGCTCTACAACCATTGTTGTAGCTCATCATATGTACTCTATGCCCCCCTATCCATACCTAGCTACTGACTATGGTACACAACTTTCCTTGTTCACACACCACATGTGGATTGGCGGATTTCTAATAGTTGGTGCTGCTGCACATGCAGCCATTTTTATGGTAAGAGACTATGATCCAACGACTCGATACAACGATCTATTAGATCGTGTCCTTAGACACCGTGATGCAATCATATCCCACCTTAACTGGGTATGTATATTTCTAGGTTTTCACAGTTTTGGTTTATACATTCATAATGATACCATGAGTGCTTTAGGTCGTCCCCAAGATATGTTTTCGGATACCGCCATACAATTACAACCGATCTTTGCTCAATGGGTACAAAATCTCCATGCTGGCGCGCCTAGCGTAACAGCTCCTGGTGCAACAACAAGTACCAGCTTAACGTGGGGAGGTGGCGAGTTAGTAGCAGTACGCGGCAAAGTTGCTTTGTTACCTATTCCATTANGAACCGCAGATTTTTTAGTCCATCACATTCACGCATTTACAATCCATGTGACTGTATTAATACTTTTGAAAGGTGTTTTATTTGCTCGCAGGTCCCGTTTGATACCCGATA ] [+] EMBL AK062299 [ CATGAGTGCTTTAGGTCGTCCCCAAGATATGTTTTCGGATACCGCCATACAATTACAACCGATCTTTGCTCAATGGGTACAAAATCTCCATGCTGGCGCGCCTAGCGTAACAGCTCCTGGTGCAACAACAAGTACCAGCTTAACGTGGGGAGGTGGCGAGTTAGTAGCAGTAGGCGGCAAAGTTGCTTTGTTACCTATTCCATTAGGAACCGCAGATTTTTTAGTCCATCACATTCACGCATTTACAATCCATGTGACTGTATTAATACTTTTGAAAGGTGTTTTATTTGCTCGCAGTTCCCGTTTGATACCCGATAAAGCAAATCTTGGTTTTCGCTTCCCTTGCGATGGGCCTGGGCGAGGGGGAACATGTCAAGTATCCGCCTGGGATCATGTTTTCTTAGGTCTATTCTGGATGTACAATTCCATTTCGGTAGTCATTTTCCATTTCAGTTGGAAAATGCAGTCGGATGTTTGGGGTACTATAAGTGATCAAGGGGTGGTAACTCATATCACAGGGGGAAACTTTGCACAGAGTTCCATTACGATTAATGGGTGGCTCCGAGATTTCTTGTGGGCACAGGCATCCCAAGTAATTCAGTCTTATGGTTCTTCATTATCCGCATATGGTCTTTTTTTCTTAGGTGCTCATTTTGTCTGGGCCTTCAGTTTAATGTTTTTATTCAGCGGCCGTGGTTATTGGCAAGAACTGATTGAATCTATCGTTTGGGCTCATAACAAATTAAAAGTTGCTCCTGCTACTCAGCCTAGAGCCTTGAGCATTATACAAGGACGTGCTGTAGGAGTAACCCATTACCTTCTGGGTGGAATTGCCACAACATGGGCATTCTTCTTAGCGAGAATTATTGCAGTAGGATAGTGGCTAGGAGGATTTGAAAGGCATTATGGAATTAAGATTTCCCAGGTTTAGCCAAGGCTTAGCTCAGGACCCCACTACTCGTCGTATTTGGTTTGGTATTGCTACCACACATGATTTCGAAAGTCATGATGATATTACTGAGGAACGTCTTTATCAGAACATTTTTGCTTCTCACTTTGGGCAATTAGCAATAATCTTTCTATGGACGTCCGGAAATCTGTTTCATGTCGCTTGGCAAGGAAATTTTGAATCATGGATACAGGATCCTTTACACGTAAGACCTATTGCTCATGCGATTTGGGATCCTCATTTTGGTCAACCCGCTGTGGAAGCCTTTACTCGAGGAGGCACCACCGATTTCCACCTCTCCTACGACGACGCCGATGCCTAGCCGCTCACCCCTACCTACCTACCTTGTACGTATACCGTATACCACCACCGCCTGTATTCCTCTTTCTTTCTCATGTATGCTACTACTCCAGTTCACTAATAACGCCACGCCTACAAACAAATTACTGTAATACTAATCACCAATCATTTCAATAAATTCAGTC] [-] EMBL CB668270 [ ATCCGCCTGGGATCATGTNTTCTTAGGTCTATTCTGGATGTACAATTCCATTTCGGTAGTCATTTTCCATTTCAGTTGGAAAATGCAGTCGGATGTTTGGGGTACTATAAGTGATCAAGGGGTGGTAACTCATATCACAGGGGGAAACTTTGCACAGAGTTCCATTACGATTAATGGGTGGCTCCGAGATTTCTTGTGGGCACAGGCATCCCAAGTAATTCAGTCTTATGGTTCTTCATTATCCGCATATGGTCTTTTTTTCTTAGGTGCTCATTTTGTCTGGGCCTTCAGTTTAATGTTTTTATTCAGCGGCCGTGGTTATTGGCAAGAACTGATTGAATCTATCGTTTGGGCTCATAACAAATTAAAAGTTGCTCCTGCTACTCAGCCTAGAGCCTTGAGCATTATACAAGGACGTGCTGTAGGAGTAACCCATTACCTTCTGGGTGGAATTGCCACAACATGGGCATTCTTCTTAGCGAGAATTATTGCAGTAGGATAGTGGCTAGGAGGATTTGAAAGGCATTATGGAATTAAGATTTCCCAGGTTTAGCCAAGGCTTAGCTCAGGACCCCACTACTCGTCGTATTTGGTTTGGTATTGCTACCGCACATGATTTCGAAAGTCATGATGATATTACTGAGGAACGTCTTTATCAGAACATTTTTGCTTCTCACTTTGGGCAATTAGCAATAATCTTTCTATGGACGTCCGGAAATCTGTTTCATGTCGCTTGGCAAGGAAATTTTGAATCATGGATACAGGATCCTTTACACGTAAGACCTATAGGTCATGCGATTTGGGATCCTCATTTTGGTCAACCCGTTAAGGA ] consensusID : consensus_9649#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 471 fasta sequence [TCGGCACGAGATGGAGTCCACCACCGGCGGCAAGGAGGAGGAGAAGGAGAAGCTGTGCCGGCGGTGCAAGGCGACGTACGCGCCGTCGGGCAACACGCGGCTCTCCTGCAGGTTCCACCCGTCGTATTTCGTGTGCCGGCGCCACGACGACCAGAAGAGGTACTACCAGCTTCGCGACGGCGACCCACCCTACGCCGCCAAGTTCTACGACTGCTGCGGCGCCGAGGACCCCGACGCCGCCGGCTGCACCACCGATTTCCACCTCTCCTACGACGACGCCGATGCCTAGCCGCTCACCCCTACCTACCTACCTTGTACGTATACCGTATACCACCACCGCCTGTATTCCTCTTTCTTTCTCATGTATGCTACTACTCCAGTTCACTAATAACGCCACGCCTACAAACAAATTACTGTAATACTAATCACCAATCATTTCAATAAAAAAAAACATATGAGATGAGATGGCTC] [+] EMBL AU174780 [TCGGCACGAGATGGAGTCCACCACCGGCGGCAAGGAGGAGGAGAAGGAGAAGCTGTGCCGGCGGTGCAAGGCGACGTACGCGCCGTCGGGCAACACGCGGCTCTCCTGCAGGTTCCACCCGTCGTATTTCGTGTGCCGGCGCCACGACGACCAGAAGAGGTACTACCAGCTTCGCGACGGCGACCCACCCTACGCCGCCAAGTTCTACGACTGCTGCGGCGCCGAGGACCCCGACGCCGCCGGCTGCACCACCGATTTCCACCTCTCCTACGACGACGCCGATGCCTAGCCGCTCACCCCTACCTACCTACCTTGTACGTATACCGTATACCACCACCGCCTGTATTCCTCTTTCTTTCTCATGTATGCTACTACTCCAGTTCACTAATAACGCCACGCCTACAAACAAATTACTGTAATACTAATCACCAATCATTTCAATAAAAAAAAA ] [+] EMBL BF430515 [ GAGTCCACCACCGGCGGCAAGGAGGAGGAGAAGGAGAAGCTGTGCCGGCGGTGCAAGGCGACGTACGCGCCGTCGGGCAACACGCGGCTCTCCTGCAGGTTCCACCCGTCGTATTTCGTGTGCCGGCGCCACGACGACCAGAAGAGGTACTACCAGCTTCGCGACGGCGACCCACCCTACGCCGCCAAGTTCTACGACTGCTGCGGCGCCGAGGACCCCGACGCCGCCGGCTGCACCACCGATTTCCACCTCTCCTACGACGACGCCGATGCCTAGCCGCTCACCCCTACCTACCTACCTTGTACGTATACCGTATACCACCACCGCCTGTATTCCTCTTTCTTTCTCATGTATGCTACTACTCCAGTTCACTAATAACGCCACGCCTACAAACAAATTACTGTAATACTAATCACCAATCATTTCAATAAATTCAGTCATATGAGATGAGATGGCTC] [+] EMBL AU174781 [ ACCACCGGCGGCAAGGAGGAGGAGAAGGAGAAGCTGTGCCGGCGGTGCAAGGCGACGTACGCGCCGTCGGGCAACACGCGGCTCTCCTGCAGGTTCCACCCGTCGTATTTCGTGTGCCGGCGCCACGACGACCAGAAGAGGTACTACCAGCTTCGCGACGGCGACCCACCCTACGCCGCCAAGTTCTACGACTGCTGCGGCGCCGAGGACCCCGACGCCGCCGGCTGCACCACCGATTTCCACCTCTCCTACGACGACGCCGATGCCTAGCCGCTCACCCCTACCTACCTACCTTGTACGTATACCGTATACCACCACCGCCTGTATTCCTCTTTCTTTCTCATGTATGCTACTACTCCAGTTCACTAATAACGCCACGCCTACAAACAAATTACTGTAATACTAATC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9649#0 TGCTATTCTTTTCCTGATCGCAGGTCATATGTATAGGACCAACTGGGGTATTGGTCATGG 60 consensus_9649#1 ------------------------------------------------------------ consensus_9649#0 CCTGAAAGATATTTTGGAGGCTCATAAAGGCCCATTTACAGGACAGGGCCATAAAGGTCT 120 consensus_9649#1 ------------------------------------------------------------ consensus_9649#0 CTATGAAATCCTAACAACGTCATGGCATGCTCAATTATCTCTTAACCTAGCTATGCTAGG 180 consensus_9649#1 ------------------------------------------------------------ consensus_9649#0 CTCTACAACCATTGTTGTAGCTCATCATATGTACTCTATGCCCCCCTATCCATACCTAGC 240 consensus_9649#1 ------------------------------------------------------------ consensus_9649#0 TACTGACTATGGTACACAACTTTCCTTGTTCACACACCACATGTGGATTGGCGGATTTCT 300 consensus_9649#1 ------------------------------------------------------------ consensus_9649#0 AATAGTTGGTGCTGCTGCACATGCAGCCATTTTTATGGTAAGAGACTATGATCCAACGAC 360 consensus_9649#1 ------------------------------------------------------------ consensus_9649#0 TCGATACAACGATCTATTAGATCGTGTCCTTAGACACCGTGATGCAATCATATCCCACCT 420 consensus_9649#1 ------------------------------------------------------------ consensus_9649#0 TAACTGGGTATGTATATTTCTAGGTTTTCACAGTTTTGGTTTATACATTCATAATGATAC 480 consensus_9649#1 ------------------------------------------------------------ consensus_9649#0 CATGAGTGCTTTAGGTCGTCCCCAAGATATGTTTTCGGATACCGCCATACAATTACAACC 540 consensus_9649#1 ------------------------------------------------------------ consensus_9649#0 GATCTTTGCTCAATGGGTACAAAATCTCCATGCTGGCGCGCCTAGCGTAACAGCTCCTGG 600 consensus_9649#1 ------------------------------------------------------------ consensus_9649#0 TGCAACAACAAGTACCAGCTTAACGTGGGGAGGTGGCGAGTTAGTAGCAGTACGCGGCAA 660 consensus_9649#1 ------------------------------------------------------------ consensus_9649#0 AGTTGCTTTGTTACCTATTCCATTANGAACCGCAGATTTTTTAGTCCATCACATTCACGC 720 consensus_9649#1 ------------------------------------------------------------ consensus_9649#0 ATTTACAATCCATGTGACTGTATTAATACTTTTGAAAGGTGTTTTATTTGCTCGCAGGTC 780 consensus_9649#1 ------------------------------------------------------------ consensus_9649#0 CCGTTTGATACCCGATAAAGCAAATCTTGGTTTTCGCTTCCCTTGCGATGGGCCTGGGCG 840 consensus_9649#1 ------------------------------------------------------------ consensus_9649#0 AGGGGGAACATGTCAAGTATCCGCCTGGGATCATGTTTTCTTAGGTCTATTCTGGATGTA 900 consensus_9649#1 ------------------------------------------------------------ consensus_9649#0 CAATTCCATTTCGGTAGTCATTTTCCATTTCAGTTGGAAAATGCAGTCGGATGTTTGGGG 960 consensus_9649#1 ------------------------------------------------------------ consensus_9649#0 TACTATAAGTGATCAAGGGGTGGTAACTCATATCACAGGGGGAAACTTTGCACAGAGTTC 1020 consensus_9649#1 ------------------------------------------------------------ consensus_9649#0 CATTACGATTAATGGGTGGCTCCGAGATTTCTTGTGGGCACAGGCATCCCAAGTAATTCA 1080 consensus_9649#1 ------------------------------------------------------------ consensus_9649#0 GTCTTATGGTTCTTCATTATCCGCATATGGTCTTTTTTTCTTAGGTGCTCATTTTGTCTG 1140 consensus_9649#1 ------------------------------------------------------------ consensus_9649#0 GGCCTTCAGTTTAATGTTTTTATTCAGCGGCCGTGGTTATTGGCAAGAACTGATTGAATC 1200 consensus_9649#1 ------------------------------------------------------------ consensus_9649#0 TATCGTTTGGGCTCATAACAAATTAAAAGTTGCTCCTGCTACTCAGCCTAGAGCCTTGAG 1260 consensus_9649#1 ------------------------------------------------------------ consensus_9649#0 CATTATACAAGGACGTGCTGTAGGAGTAACCCATTACCTTCTGGGTGGAATTGCCACAAC 1320 consensus_9649#1 ------------------------------------------------------------ consensus_9649#0 ATGGGCATTCTTCTTAGCGAGAATTATTGCAGTAGGATAGTGGCTAGGAGGATTTGAAAG 1380 consensus_9649#1 ------------------------------------------------------------ consensus_9649#0 GCATTATGGAATTAAGATTTCCCAGGTTTAGCCAAGGCTTAGCTCAGGACCCCACTACTC 1440 consensus_9649#1 ------------------------------------------------------------ consensus_9649#0 GTCGTATTTGGTTTGGTATTGCTACCACACATGATTTCGAAAGTCATGATGATATTACTG 1500 consensus_9649#1 -------TCGGCACGAGATGGAGTCCACCACCGGCGGCAAGGAGGAGGAGAAGGAGAAGC 53 * ** * ** * **** * * * * ** * * consensus_9649#0 AGGAACGTCTTTATCAGAACATTTTTGCTTCTCACTTTGGGCAATTAGCAATAATCTTTC 1560 consensus_9649#1 TGTGCCGGCGGTGCAAGGCGACGTACGCGCC----GTCGGGCAACACGCGG---CTCTCC 106 * ** * * ** * * ** * * ****** ** * * consensus_9649#0 TATGGACGTCCGGAAATCTGTTTCATGTCGCTTGGCAAGGAAATTTTGAATCATGGATAC 1620 consensus_9649#1 TGCAGGTTCC-----ACCCGTCGTATTTCGTGTGCCGGCGCCACGACGACCAGAAGAGGT 161 * * * * * ** ** *** ** * * * ** ** consensus_9649#0 AGGATCCTTTACACGTAAGACCTATTGCTCATGCGATTTGGGATCCTCATTTTGGTCAAC 1680 consensus_9649#1 ACTACCAGCTTCGCGACGG--CGACCCACCCTACGCCGCCAAGTTCT-ACGACTGCTGCG 218 * * * * * ** * * * * * ** * ** * * consensus_9649#0 CCGCTGTGGAAGCCTTTACTCGAGGAGGCACCACCGATTTCCACCTCTCCTACGACGACG 1740 consensus_9649#1 GCGCCGAGGACCCCGACGCCGCCGGCTGCACCACCGATTTCCACCTCTCCTACGACGACG 278 *** * *** ** * ** ********************************* consensus_9649#0 CCGATGCCTAGCCGCTCACCCCTACCTACCTACCTTGTACGTATACCGTATACCACCACC 1800 consensus_9649#1 CCGATGCCTAGCCGCTCACCCCTACCTACCTACCTTGTACGTATACCGTATACCACCACC 338 ************************************************************ consensus_9649#0 GCCTGTATTCCTCTTTCTTTCTCATGTATGCTACTACTCCAGTTCACTAATAACGCCACG 1860 consensus_9649#1 GCCTGTATTCCTCTTTCTTTCTCATGTATGCTACTACTCCAGTTCACTAATAACGCCACG 398 ************************************************************ consensus_9649#0 CCTACAAACAAATTACTGTAATACTAATCACCAATCATTTCAATAAATTCAGTC------ 1914 consensus_9649#1 CCTACAAACAAATTACTGTAATACTAATCACCAATCATTTCAATAAAAAAAAACATATGA 458 *********************************************** * * consensus_9649#0 ------------- consensus_9649#1 GATGAGATGGCTC 471 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||