These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9650#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1361 fasta sequence [TCTGCGTGCTGCAGTTGGATGAGCTCGATTTCAACTTGCTGTGCGTGTAGAGGAATGCAGTACAGCCTGTACAGGGTCAAGCTTTGCTGAGAATTGTTTGAAGGCGCTGCTAGATTTGAGAATTTTATAGATTGGCATCACATCCGGCCTTTTATCTCGACTTTAAAGTTCTGATGGATGATGGATTATGGATCAAACAGAGTTTATGAAAATTATTTGAGGGCACAGACGAGAGAATTTAGTATTAGAAAGTTGAAAGGTTGACTTTAAAAAGTTCTCTAAGAAATGCCGATGAAGAAAGTTTATGCAAAAATCATACCGTTTGGGAGTTTGGGAAGTGCGCCGCAATAATCAAAAATCCGTGAGAGGAAAAGAATGCTTTTTTTAATTATTTTTCATCTCATTTTATACTCTGCATTTGCTGTTTCATTCTAGCATTTTGGATTTAATTAATGTGCTAGTTATTCAATTAACTTACACATTTGCTGGGCTCTACAAAACCTACTCAATTCCGTGATGAACTGGCTACCTTAAATTCAGTCCAAGGTTACAGTCAACCATTTTATCTGGTACAAGTCTATAAGATAGTAAATTATATTCAATATTGATCTTGTTTACATCCAGACTGTGCTGGTATCTTCGCTGTCACAATTTGTTCATGTTAACGGTCGTTTAAAACCAAGTAGAATACAGATTTAGTTTAGAAAAAATAAACAATAAACTTATTTTGCACTTTATTTTAGTCGAAATGCATCTGCACTTTGGTTGTGCAGCAGGCACAAAATAAACAGAACAAAATTTCTAACAGATTCAGGGGAAGCTATAGCATGCTACACATGTTTTGAGCCATTTGGTACTCTTGCTCTTCGATACTCGATTGCTGGTTCTTTCATGGGTTGCAGGTTTTAGTTGTACAGGCAAGCGAGGCGCCGAATGACTTGAGAAGTACAGCTCAAGCCAACCCAGTGGGGGAGAATACGCATGATGCGACGAAGAGGAATGCAAGCGAATCTTCAGCGTTCTCGAGCACGAAAGCGGCTCCAGAAGGAACCTACAAAGCTAGAGAAATAGTCGCCTACGATGATCTGTTCTGAACTTCTAATAACCAGCCTTCTTTAGGGAGGAGGTGAGACAACCATTCAGGTTTGTTCTTGTACACTGCTAGGGTCTTTAGGTGAGTAAGCTATGGGTATTTTTTAGTGTGTGAAGGTACCTTCAGATGGGTAGGTGTTTCTTGTATTCAGCATGTATTGTGGAAGTTATCATCAAAACATGAGAATTTATGTATGTTAGATTGTTAATATTGACAGTGCCTTACCATCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK066370 [TCTGCGTGCTGCAGTTGGATGAGCTCGATTTCAACTTGCTGTGCGTGTAGAGGAATGCAGTACAGCCTGTACAGGGTCAAGCTTTGCTGAGAATTGTTTGAAGGCGCTGCTAGATTTGAGAATTTTATAGATTGGCATCACATCCGGCCTTTTATCTCGACTTTAAAGTTCTGATGGATGATGGATTATGGATCAAACAGAGTTTATGAAAATTATTTGAGGGCACAGACGAGAGAATTTAGTATTAGAAAGTTGAAAGGTTGACTTTAAAAAGTTCTCTAAGAAATGCCGATGAAGAAAGTTTATGCAAAAATCATACCGTTTGGGAGTTTGGGAAGTGCGCCGCAATAATCAAAAATCCGTGAGAGGAAAAGAATGCTTTTTTTAATTATTTTTCATCTCATTTTATACTCTGCATTTGCTGTTTCATTCTAGCATTTTGGATTTAATTAATGTGCTAGTTATTCAATTAACTTACACATTTGCTGGGCTCTACAAAACCTACTCAATTCCGTGATGAACTGGCTACCTTAAATTCAGTCCAAGGTTACAGTCAACCATTTTATCTGGTACAAGTCTATAAGATAGTAAATTATATTCAATATTGATCTTGTTTACATCCAGACTGTGCTGGTATCTTCGCTGTCACAATTTGTTCATGTTAACGGTCGTTTAAAACCAAGTAGAATACAGATTTAGTTTAGAAAAAATAAACAATAAACTTATTTTGCACTTTATTTTAGTCGAAATGCATCTGCACTTTGGTTGTGCAGCAGGCACAAAATAAACAGAACAAAATTTCTAACAGATTCAGGGGAAGCTATAGCATGCTACACATGTTTTGAGCCATTTGGTACTCTTGCTCTTCGATACTCGATTGCTGGTTCTTTCATGGGTTGCAGGTTTTAGTTGTACAGGCAAGCGAGGCGCCGAATGACTTGAGAAGTACAGCTCAAGCCAACCCAGTGGGGGAGAATACGCATGATGCGACGAAGAGGAATGCAAGCGAATCTTCAGCGTTCTCGAGCACGAAAGCGGCTCCAGAAGGAACCTACAAAGCTAGAGAAATAGTCGCCTACGATGATCTGTTCTGAACTTCTAATAACCAGCCTTCTTTAGGGAGGAGGTGAGACAACCATTCAGGTTTGTTCTTGTACACTGCTAGGGTCTTTAGGTGAGTAAGCTATGGGTATTTTTTAGTGTGTGAAGGTACCTTCAGATGGGTAGGTGTTTCTTGTATTCAGCATGTATTGTGGAAGTTATCATCAAAACATGAGAATTTATGTATGTTAGATTGTTAATATTGACAGTGCCTTA ] [+] EMBL CB000425 [ ccGTTTTAGTTGTACAGGCAAGCGAGGCGCCGCCTGACTTGAGAAGTACAGCTCAAGCCAACCCAGTGGGGGAGAATACGCATGATGCGACGAAGAGGAATGCAAGCGAATCTTCAGCGTTCTCGAGCACGAAAGCGGCTCCAGAAGGAACCTACAAAGCTAGAGAAATAGTCGCCTACGATGATCTGTTCTGAACTTCTAATAACCAGCCTTCTTTAGGGAGGAGGTGAGACAACCATTCAGGTTTGTTCTTGTACACTGCTAGGGTCTTTAGGTGAGTAAGCTATGGGTATTTTTTAGTGTGTGAAGGTACCTTCAGATGGGTAGGTGTTTCTTGTATTCAGCATGTATTGTGGAAGTTATCATCAAAACATGAGAATTTATGTATGTTAGATTGTTAATATTGACAGTGCCTTACCATCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_9650#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 800 fasta sequence [CAAGCGCGGGCGCGCGAGCCCCGACCCTCCGGCGAAGCGCCGCCGCCGCGGCCGCGGCCACGGCCACGGCCCTGGCCCGCCGGAGTTAGAGGCCGACGAGCTGGAGGCTCCTCCGGCGCCGGTACAGGCTCCATCGGCGGCGGCGGCGGCTTCGGAGCCGTTGCTAGTGATGGTCGCGGGGCTGCCGCCCGGGTGCGGCGTGATGGAGCTCAAGTCGCGGCTCGGGGCGTACGGCCCCATCGCGCGCACCCGCATAGACGCCGCCTCGGCCACCGGGTACGTCACCTTCCGCTCCGCCGCGGCCGCCATGGCCGCCATTGCTGCCTCCCTCGACCCCGACGGTGGCGTCACCGTCGGATCCAAGAAGGTTTTAGTTGTACAGGCAAGCGAGGCGCCGAATGACTTGAGAAGTACAGCTCAAGCCAACCCAGTGGGGGAGAATACGCATGATGCGACGAAGAGGAATGCAAGCGAATCTTCAGCGTTCTCGAGCACGAAAGCGGCTCCAGAAGGAACCTAC-AAAGCTAGAGAAATAGTCGCCTACGATGATCTGTTCTGAACTTCTAATAACCAGCCTTCTTTAGGGAGGAGGTGAGACAACCATTCAGGTTTGTTCTTGTACACTGCTAGGGTCTTTAGGTGAGTAAGCTATGGGTATTTTTTAGTGTGTGAAGGTACCTTCAGATGGGTAGGTGTTTCTTGTATTCAGCATGTATTGTGGAAGTTATCATCAAAACATGAGAATTTATGTATGTTAGATTGTTAATATTGACAGTGCCTTACCATCTTCTCAAAAAAAA] [+] EMBL CA753256 [CAAGCGCGGGCGCGCGAGCCCCGACCCTCCGGCGAAGCGCCGCCGCCGCGGCCGCGGCCACGGCCACGGCCCTGGCCCGCCGGAGTTAGAGGCCGACGAGCTGGAGGCTCCTCCGGCGCCGGTACAGGCTCCATCGGCGGCGGCGGCGGCTTCGGAGCCGTTGCTAGTGATGGTCGCGGGGCTGCCGCCCGGGTGCGGCGTGATGGAGCTCAAGTCGCGGCTCGGGGCGTACGGCCCCATCGCGCGCACCCGCATAGACGCCGCCTCGGCCACCGGGTACGTCACCTTCCGCTCCGCCGCGGCCGCCATGGCCGCCATTGCTGCCTCCCTCGACCCCGACGGTGGCGTCACCGTCGGATCCAAGAAGGTTTTAGTTGTACAGGCAAGCGAGGCGCCGAATGACTTGAGAAGTACAGCTCAAGCCAACCCAGTGGGGGAGAATACGCATGATGCGACGANGAGGAATGCAAGCGAATCTTCAGCGTTCTCGAGCACGAGAGCGGCTCCAGAAGGAACCTACAAAAGCTAGAGAAATAGTCGC ] [+] EMBL AU174789 [ CTCAAGTCGCGGCTCGGGGCGTACGGCCCCATCGCGCGCACCCGCATAGACGCCGCCTCGGCCACCGGGTACGTCACCTTCCGCTCCGCCGCGGCCGCCATGGCCGCCATTGCTGCCTCCCTCGACCCCGACGGTGGCGTCACCGTCGGATCCAAGAAGGTTTTAGTTGTACAGGCAAGCGAGGCGCCGAATGACTTGAGAAGTACAGCTCAAGCCAACCCAGTGGGGGAGAATACGCATGATGCGACGAAGAGGAATGCAAGCGAATCTTCAGCGTTCTCGAGCACGAAAGCGGCTCCAGAAGGAACCTAC AAAGCTAGAGAAATAGTCGCCTACGATGATCTGTTCTGAACTTCTAATAACCAGCCTTCTTTAGGGAGGAGGTGAGACAACCATTCAGGTTTGTTC ] [+] EMBL CB966191 [ ATGGCCGCCATTGCTGCCTCCCTCGA CCCGACGGTGGCGTCA CGTCGGATCCAAGAAGGTTTTAGTTGTACAGGCAAGCGAGGCGCCGAATGACTTGAGAAGTACAGCTCAAGCCAACCCAGTGGGGGAGAATACGCATGATGCGACGAAGAGGAATGCAAGCGAATCTTCAGCGTTCTCGAGCACGAAAGCGGCTCCAGAAGGAACCTAC AAAGCTAGAGAAATAGTCGCCTACGATGATCTGTTCTGAACTTCTAATAACCAGCCTTCTTTAGGGAGGAGGTGAGACAACCATTCAGGTTTGTTCTTGTACACTGCTAGGGTCTTTAGGTGAGTAAGCTATGGGTATTTTTTAGTGTGTGAAGGTACCTTCAGATGGGTAGGTGTTTCTTGTATTCAGCATGTATTGTGGAAGTTATCAT ] [+] EMBL AU174788 [ TCCCTCGACCCCGACGGTGGCGTCACCGTCGGATCCAAGAAGGTTTTAGTTGTACAGGCAAGCGAGGCGCCGAATGACTTGAGAAGTACAGCTCAAGCCAACCCAGTGGGGGAGAATACGCATGATGCGACGAAGAGGAATGCAAGCGAATCTTCAGCGTTCTCGAGCACGAAAGCGGCTCCAGAAGGAACCTAC AAAGCTAGAGAAATAGTCGCCTACGATGATCTGTTCTGAACTTCTAATAACCAGCCTTCTTTAGGGAGGAGGTGAGACAACCATTCAGGTTTGTTCTTGTACACTGCTAGGGTCTTTAGGTGAGTAAGCTATGGGTATTTTTTAGTGTGTGAAGGTACCTTCAGATGGGTAGGTGTTTCTTGTATTCAGCATGTATTGTGGAAGTTATCATCAAAACATGAGAATTTATGTATGTTAGATTGTTAATATTGACAGTGCCTTACCATCTTCTCAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9650#0 TCTGCGTGCTGCAGTTGGATGAGCTCGATTTCAACTTGCTGTGCGTGTAGAGGAATGCAG 60 consensus_9650#1 ------------------------------------------------------------ consensus_9650#0 TACAGCCTGTACAGGGTCAAGCTTTGCTGAGAATTGTTTGAAGGCGCTGCTAGATTTGAG 120 consensus_9650#1 ------------------------------------------------------------ consensus_9650#0 AATTTTATAGATTGGCATCACATCCGGCCTTTTATCTCGACTTTAAAGTTCTGATGGATG 180 consensus_9650#1 ------------------------------------------------------------ consensus_9650#0 ATGGATTATGGATCAAACAGAGTTTATGAAAATTATTTGAGGGCACAGACGAGAGAATTT 240 consensus_9650#1 ------------------------------------------------------------ consensus_9650#0 AGTATTAGAAAGTTGAAAGGTTGACTTTAAAAAGTTCTCTAAGAAATGCCGATGAAGAAA 300 consensus_9650#1 ------------------------------------------------------------ consensus_9650#0 GTTTATGCAAAAATCATACCGTTTGGGAGTTTGGGAAGTGCGCCGCAATAATCAAAAATC 360 consensus_9650#1 ------------------------------------------------------------ consensus_9650#0 CGTGAGAGGAAAAGAATGCTTTTTTTAATTATTTTTCATCTCATTTTATACTCTGCATTT 420 consensus_9650#1 ------------------------------------------------------------ consensus_9650#0 GCTGTTTCATTCTAGCATTTTGGATTTAATTAATGTGCTAGTTATTCAATTAACTTACAC 480 consensus_9650#1 -----------------------------------------------------------C 1 * consensus_9650#0 ATTTGCTGGGCTCTACAAAACCTACTCAATTCCGTGATGAACTGGCTACCTTAAATTCAG 540 consensus_9650#1 AAGCGC-GGGCGCGCGAGCCCCGACCC--TCCGGCGAAGCGCCG-CCGCCGCGGCCGCGG 57 * ** **** * * ** ** * * * * ** * * * * ** * * consensus_9650#0 TCCAAGGTTACAGTCAACCATTTTATCTGGTACAAGTCTATAAGATAGTAAATTATATTC 600 consensus_9650#1 -CCACGGCCACGGCCCTGGCCCGCCGGAGTTAGAGGCCGACGAGCTGGAGGCTCCT--CC 114 *** ** ** * * * ** * * * * ** * * * * * consensus_9650#0 AATATTGATCTTGTTTACATCCAGACTGTGCTGGTATCTTCGCTGTCACAATTTGTTCAT 660 consensus_9650#1 GGCGCCGGTACAGGCTCCATC--GGCGGCGGCGGCGGCTTCGGAGCC-------GTTGCT 165 * * * * **** * * * * ** ***** * * *** * consensus_9650#0 GTTAACGGTCGTTTAAAACCAAGTAGAATACAGATTTAGTTTAGAAAAAATAAACAATAA 720 consensus_9650#1 AGTGATGGTCG--CGGGGC----TGCCGCCCGGGTGCGGCGTGATGGAGCTCAAGTCGCG 219 * * ***** * * * * * * * * * ** consensus_9650#0 ACTTATTTTGCACTTTATTTTAGTCGAAATGCATCTGCACTTTGGTTGTGCAGCAGGCAC 780 consensus_9650#1 GCTCGGGGCGTACGGCCCCATCGC----GCGCACCCGCA--TAGACGCCGCCTCGGCCAC 273 ** * ** * * *** * *** * * ** * * *** consensus_9650#0 AAAATAAACAGAACAAAATTTC-TAACAGATTCAGGGGAAGCTATAGCATGCTACACATG 839 consensus_9650#1 CGGGTACGTCACCTTCCGCTCCGCCGCGGCCGCCATGGCCGCCATTGC------TGCCTC 327 ** * * * * * ** ** ** ** * * consensus_9650#0 TTTTGAGCCATTTGGTACTCTTGCTCTTCGATACTCGATTGCTGGTTCTTTCATGGGTTG 899 consensus_9650#1 CCTCGACCCCGACGGTGGCGTCACCGTCGGATCCAAGA---------------------- 365 * ** ** *** * * * *** * ** consensus_9650#0 CAGGTTTTAGTTGTACAGGCAAGCGAGGCGCCGAATGACTTGAGAAGTACAGCTCAAGCC 959 consensus_9650#1 -AGGTTTTAGTTGTACAGGCAAGCGAGGCGCCGAATGACTTGAGAAGTACAGCTCAAGCC 424 *********************************************************** consensus_9650#0 AACCCAGTGGGGGAGAATACGCATGATGCGACGAAGAGGAATGCAAGCGAATCTTCAGCG 1019 consensus_9650#1 AACCCAGTGGGGGAGAATACGCATGATGCGACGAAGAGGAATGCAAGCGAATCTTCAGCG 484 ************************************************************ consensus_9650#0 TTCTCGAGCACGAAAGCGGCTCCAGAAGGAACCTACAAAGCTAGAGAAATAGTCGCCTAC 1079 consensus_9650#1 TTCTCGAGCACGAAAGCGGCTCCAGAAGGAACCTACAAAGCTAGAGAAATAGTCGCCTAC 544 ************************************************************ consensus_9650#0 GATGATCTGTTCTGAACTTCTAATAACCAGCCTTCTTTAGGGAGGAGGTGAGACAACCAT 1139 consensus_9650#1 GATGATCTGTTCTGAACTTCTAATAACCAGCCTTCTTTAGGGAGGAGGTGAGACAACCAT 604 ************************************************************ consensus_9650#0 TCAGGTTTGTTCTTGTACACTGCTAGGGTCTTTAGGTGAGTAAGCTATGGGTATTTTTTA 1199 consensus_9650#1 TCAGGTTTGTTCTTGTACACTGCTAGGGTCTTTAGGTGAGTAAGCTATGGGTATTTTTTA 664 ************************************************************ consensus_9650#0 GTGTGTGAAGGTACCTTCAGATGGGTAGGTGTTTCTTGTATTCAGCATGTATTGTGGAAG 1259 consensus_9650#1 GTGTGTGAAGGTACCTTCAGATGGGTAGGTGTTTCTTGTATTCAGCATGTATTGTGGAAG 724 ************************************************************ consensus_9650#0 TTATCATCAAAACATGAGAATTTATGTATGTTAGATTGTTAATATTGACAGTGCCTTACC 1319 consensus_9650#1 TTATCATCAAAACATGAGAATTTATGTATGTTAGATTGTTAATATTGACAGTGCCTTACC 784 ************************************************************ consensus_9650#0 ATCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1361 consensus_9650#1 ATCTTCTCAAAAAAAA-------------------------- 800 ****** ******** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||