cluster # 9651

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Oryza sativa
cluster # 9651 cluster # 9651 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9651#0 length = 1101 sequences # 4

consensus_9651#1 length = 492 sequences # 1
consensus_9651#2 length = 363 sequences # 1

consensusID : consensus_9651#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1101
fasta sequence

                              [CCAACCCACCGCTACCCTCTTCTCGCCGCAAGCGAGGCGAGCCAAGCAAACGCGAGGCCGACGACGACGACGAGGAGGAGGAAGCGCAGCCACTAGTCGCGGCGGCGGCGGCGGCGGCGGCGGCGGGTGATCGGAGGAGGGATGGTGGGGCTTGTGGGAGGAGGAGGTTGGAGGGTCGGGGATGATGCGGCGGGTGGGGGTGGGGGAGGAGCGGTGGCGGCGGGGGCTGCGGCGGCGGCGGAGGCGGAGCACATGCGGAGGCTCCACAGCCACGCCCCCGGCGAGCACCAGTGCAGCTCCGCGCTCGTCAAGCACATCAAGGCTCCTGTTCACCTCGTGTGGTCGCTGGTGCGGAGCTTCGACCAGCCGCAGAGGTACAAGCCGTTCGTCAGCCGCTGCGTCGTGCGCGGCGGCGACCTCGAGATCGGCAGCGTGCGCGAGGTCAACGTCAAGACCGGCCTCCCGGCGACCACCAGCACGGAGAGGCTCGAGCTGCTCGACGACGACGAGCACATCCTCAGCGTCAAGTTCGTCGGCGGCGACCACCGCCTCAGGAACTACTCATCCATCGTAACTGTCCATCCGGAGAGCATCGATGGAAGACCAGGGACGCTTGTGATTGAATCATTTGTGGTGGACGTGCCTGATGGAAATACAAAGGACGAGACATGCTA-CTTTGTCGAGGCCGTGATCAAGTGCAACTTAACATCTCTCGCCGAGGTATCAGAGCGGCTAGCAGTTCAGTCACCCACCTCGCCACTTGAACAGTAGGGTCATCACTGGCACGGGACATGCGAACTGGCATGAATAAGAAGCTTCAAATGGTTGCTAGAGATTTAAATCTTTTTGAGATGGTAGTTCCTCCATTGTCTTCGATATATATGCCTCTTGTAAGGATTAGTATGTAGGGTTAATTATCTTTAGTTGCTGGCTAGTGATGGGCTTAGGTCTTTTTAGGGACTGCACCTAGCTACCTTGTAGTTATGTATGCATACTGCTAGTAGTATGTGTATAAATAGGGAAGCATGGAGTGGTTTTTGCCTCTTTGGTGCACATGTGAAACAACCTCAAGAGTTCTTTTTCCTGCAAAAAAAAAAAAAA]

[+] EMBL AK065280             [CCAACCCACCGCTACCCTCTTCTCGCCGCAAGCGAGGCGAGCCAAGCAAACGCGAGGCCGACGACGACGACGAGGAGGAGGAAGCGCAGCCACTAGTCGCGGCGGCGGCGGCGGCGGCGGCGGCGGGTGATCGGAGGAGGGATGGTGGGGCTTGTGGGAGGAGGAGGTTGGAGGGTCGGGGATGATGCGGCGGGTGGGGGTGGGGGAGGAGCGGTGGCGGCGGGGGCTGCGGCGGCGGCGGAGGCGGAGCACATGCGGAGGCTCCACAGCCACGCCCCCGGCGAGCACCAGTGCAGCTCCGCGCTCGTCAAGCACATCAAGGCTCCTGTTCACCTCGTGTGGTCGCTGGTGCGGAGCTTCGACCAGCCGCAGAGGTACAAGCCGTTCGTCAGCCGCTGCGTCGTGCGCGGCGGCGACCTCGAGATCGGCAGCGTGCGCGAGGTCAACGTCAAGACCGGCCTCCCGGCGACCACCAGCACGGAGAGGCTCGAGCTGCTCGACGACGACGAGCACATCCTCAGCGTCAAGTTCGTCGGCGGCGACCACCGCCTCAGGAACTACTCATCCATCGTAACTGTCCATCCGGAGAGCATCGATGGAAGACCAGGGACGCTTGTGATTGAATCATTTGTGGTGGACGTGCCTGATGGAAATACAAAGGACGAGACATGCTA CTTTGTCGAGGCCGTGATCAAGTGCAACTTAACATCTCTCGCCGAGGTATCAGAGCGGCTAGCAGTTCAGTCACCCACCTCGCCACTTGAACAGTAGGGTCATCACTGGCACGGGACATGCGAACCGGCATGAATAAGAAGCTTCAAATGGTTGCTAGAGATTTAAATCTTTTTGAGATGGTAGTTCCTCCATTGTCTTCGATATATATGCCTCTTGTAAGGATTAGTATGTAGGGTTAATTATCTTTAGTTGCTGGCTAGTGATGGGCTTAGGTCTTTTTAGGGACTGCACCTAGCTACCTTGTAGTTATGTATGCATACTGCTAGTAGTATGTGTATAAATAGGGAAGCATGGAGTGGTTTTTGCCTCTTTGGTGCACATGTGAAACAACCTCAAGAGTTC                        ]
[+] EMBL AU174816             [                                                                                                                                                                                                                                                       AGCACATGCGGAGGCTCCACAGCCACGCCCCCGGCGAGCACCAGTGCAGCTCCGCGCTCGTCAAGCACATCAAGGCTCCTGTTCACCTCGTGTGGTCGCTGGTGCGGAGCTTCGACCAGCCGCAGAGGTACAAGCCGTTCGTCAGCCGCTGCGTCGTGCGCGGCGGCGACCTCGAGATCGGCAGCGTGCGCGAGGTCAACGTCAAGACCGGCCTCCCGGCGACCACCAGCACGGAGAGGCTCGAGCTGCTCGACGACGACGAGCACATCCTCAGCGTCAAGTTCGTCGGCGGCGACCACCGCCTCAGGAACTACTCATCCATCGTAACTGTCCATCCGGAGAGCATCGATGGAAGACCAGGGACGCTTGTGATTGAATCATTTGTGGTGGACGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CB684685             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TGTGATTGAATCATTTGTGGGGAACGTGCCTGATGGAAATACAAAGGACGAGACATG TAGCTTTGTCGAGGCCGTGATCAAGTGCAACTTAACATCTCTCGCCGAGGTATCAGAGCGGCTAGCAGTTCAGTCACCCCCCTCGCCACTTGAACAGTAGGGTCATCACTGGCACGGGACATGCGAACTGGCATGAATAAGAAGCTTCAAATGGTTGCTAGAGATTTAAATCTTTTTGAGATGGTAGTTCCTCCATTGTCTTCGATATATATGCCTCTGGTAAGGATTAGTATGTAGGGTTAATTATCTTTAGCGGCGGGCTAGAGAgg                                                                                                                                                                 ]
[+] EMBL AU174815             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CGTGCCTGATGGAAATACAAAGGNCGAGACATGCTA CTTTGTCGAGGCCGTGATCAAGTGCAACTTAACATCTCTCGCCGAGGTATCAGAGCGGCTAGCAGTTCAGTCACCCNCCTCGCCACTTGAACAGTAGGGTCATCNCTGGCACGGGACATGCGAACTGGCATGAATAAGAAGCTTCAAATGGTTGCTAGAGATTTAAATCTTTTTGAGATGGTAGTTCCTCCATTGTCTTCGATATATATGCCTCTTGTAAGGATTAGTATGTAGGGTTAATTATCTTTAGTTGCTGGCTAGTGATGGGCTTAGGTCTTTTTAGGGACTGCACCTAGCTACCTTGTAGTTATGTATGCATACTGCTAGTAGTATGTGTATAAATAGGGAAGCATGGAGTGGTTTTTGCCTCTTTGGTGCACATGTGAAACAACCTCAAGAGTTCTTTTTCCTGCAAAAAAAAAAAAAA]




>consensus_9651#0
CCAACCCACCGCTACCCTCTTCTCGCCGCAAGCGAGGCGAGCCAAGCAAACGCGAGGCCG
ACGACGACGACGAGGAGGAGGAAGCGCAGCCACTAGTCGCGGCGGCGGCGGCGGCGGCGG
CGGCGGGTGATCGGAGGAGGGATGGTGGGGCTTGTGGGAGGAGGAGGTTGGAGGGTCGGG
GATGATGCGGCGGGTGGGGGTGGGGGAGGAGCGGTGGCGGCGGGGGCTGCGGCGGCGGCG
GAGGCGGAGCACATGCGGAGGCTCCACAGCCACGCCCCCGGCGAGCACCAGTGCAGCTCC
GCGCTCGTCAAGCACATCAAGGCTCCTGTTCACCTCGTGTGGTCGCTGGTGCGGAGCTTC
GACCAGCCGCAGAGGTACAAGCCGTTCGTCAGCCGCTGCGTCGTGCGCGGCGGCGACCTC
GAGATCGGCAGCGTGCGCGAGGTCAACGTCAAGACCGGCCTCCCGGCGACCACCAGCACG
GAGAGGCTCGAGCTGCTCGACGACGACGAGCACATCCTCAGCGTCAAGTTCGTCGGCGGC
GACCACCGCCTCAGGAACTACTCATCCATCGTAACTGTCCATCCGGAGAGCATCGATGGA
AGACCAGGGACGCTTGTGATTGAATCATTTGTGGTGGACGTGCCTGATGGAAATACAAAG
GACGAGACATGCTACTTTGTCGAGGCCGTGATCAAGTGCAACTTAACATCTCTCGCCGAG
GTATCAGAGCGGCTAGCAGTTCAGTCACCCACCTCGCCACTTGAACAGTAGGGTCATCAC
TGGCACGGGACATGCGAACTGGCATGAATAAGAAGCTTCAAATGGTTGCTAGAGATTTAA
ATCTTTTTGAGATGGTAGTTCCTCCATTGTCTTCGATATATATGCCTCTTGTAAGGATTA
GTATGTAGGGTTAATTATCTTTAGTTGCTGGCTAGTGATGGGCTTAGGTCTTTTTAGGGA
CTGCACCTAGCTACCTTGTAGTTATGTATGCATACTGCTAGTAGTATGTGTATAAATAGG
GAAGCATGGAGTGGTTTTTGCCTCTTTGGTGCACATGTGAAACAACCTCAAGAGTTCTTT
TTCCTGCAAAAAAAAAAAAAA

consensusID : consensus_9651#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 492
fasta sequence

                              [GGGGGCTGCGGCGGCGGCGGAGGCGGAGCACATGCGGAGGCTCCACAGCCACGCCCCCGGCGAGCACCAGTGCAGCTCCGCGCTCGTCAAGCACATCAAGGCTCCTGTTCACCTCGTGAGTTCCACGACTCACGACGCCTTCCATCCTCTTTTTTTTTCTGTTCTTCGTTTGGTGTTTGTTCGATTGGTTGCGTTTGGTTTGGCTACTTGGCTCGGTGGTTGCTCCTTGGATCTGAATTTTTTTTATACTTTGTTTTGGCGCTGGGTTTGGTGCTCGTGCGGCTCGGTTTGATGCGTAGCTGTTGCCTGAGATATTTGTTCGGTTGATTGGTACTAGCTCGAATTGAATGTGCGAATTTCGCCGTGTTTTTGGCCGCTCGAGATCCCAAAATTGTATGGGATGTTTTGACTTGTTTCTTCGCGGCATCTGCTTGGTTGATTGTATTGTTGGTGATGGGAGTATTTGATTGTTTGATCGACTGATCCACCCCT]

[+] EMBL CB641034             [GGGGGCTGCGGCGGCGGCGGAGGCGGAGCACATGCGGAGGCTCCACAGCCACGCCCCCGGCGAGCACCAGTGCAGCTCCGCGCTCGTCAAGCACATCAAGGCTCCTGTTCACCTCGTGAGTTCCACGACTCACGACGCCTTCCATCCTCTTTTTTTTTCTGTTCTTCGTTTGGTGTTTGTTCGATTGGTTGCGTTTGGTTTGGCTACTTGGCTCGGTGGTTGCTCCTTGGATCTGAATTTTTTTTATACTTTGTTTTGGCGCTGGGTTTGGTGCTCGTGCGGCTCGGTTTGATGCGTAGCTGTTGCCTGAGATATTTGTTCGGTTGATTGGTACTAGCTCGAATTGAATGTGCGAATTTCGCCGTGTTTTTGGCCGCTCGAGATCCCAAAATTGTATGGGATGTTTTGACTTGTTTCTTCGCGGCATCTGCTTGGTTGATTGTATTGTTGGTGATGGGAGTATTTGATTGTTTGATCGACTGATCCACCCCT]




>consensus_9651#1
GGGGGCTGCGGCGGCGGCGGAGGCGGAGCACATGCGGAGGCTCCACAGCCACGCCCCCGG
CGAGCACCAGTGCAGCTCCGCGCTCGTCAAGCACATCAAGGCTCCTGTTCACCTCGTGAG
TTCCACGACTCACGACGCCTTCCATCCTCTTTTTTTTTCTGTTCTTCGTTTGGTGTTTGT
TCGATTGGTTGCGTTTGGTTTGGCTACTTGGCTCGGTGGTTGCTCCTTGGATCTGAATTT
TTTTTATACTTTGTTTTGGCGCTGGGTTTGGTGCTCGTGCGGCTCGGTTTGATGCGTAGC
TGTTGCCTGAGATATTTGTTCGGTTGATTGGTACTAGCTCGAATTGAATGTGCGAATTTC
GCCGTGTTTTTGGCCGCTCGAGATCCCAAAATTGTATGGGATGTTTTGACTTGTTTCTTC
GCGGCATCTGCTTGGTTGATTGTATTGTTGGTGATGGGAGTATTTGATTGTTTGATCGAC
TGATCCACCCCT

consensusID : consensus_9651#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 363
fasta sequence

                              [ACCTCCCCACTTGAACATTAGGGTCATCACTGGCACGGGACATGCGAACTGCCATAAATAAAAAGCTTCAAATGGTTGCTAGAAATTTAAATCTTTTTGAGATGGTAGTTCCTCCATTGTCTTCAATATATATCCCTCTTGTAAGGATTAGTATGTAGGGTTAATTATCTTTAGTTGCTGGCTAGTAATGGCCTTAGGTCTTTTTAGGGACTCCACCTAGCTACCTTGTAGTTATGTATGCATACTGCTAGTAGTATGTGTATAAATAGGGAACCATGGAGTGGTTTTTCCCTCTTTGGTGCACATGTGAAACACCCTCAAGAGTTCTTTTTCCTCCATTTGAGCTGGCTTCCCATTGTAGTA]

[-] EMBL CB684686             [ACCTCCCCACTTGAACATTAGGGTCATCACTGGCACGGGACATGCGAACTGCCATAAATAAAAAGCTTCAAATGGTTGCTAGAAATTTAAATCTTTTTGAGATGGTAGTTCCTCCATTGTCTTCAATATATATCCCTCTTGTAAGGATTAGTATGTAGGGTTAATTATCTTTAGTTGCTGGCTAGTAATGGCCTTAGGTCTTTTTAGGGACTCCACCTAGCTACCTTGTAGTTATGTATGCATACTGCTAGTAGTATGTGTATAAATAGGGAACCATGGAGTGGTTTTTCCCTCTTTGGTGCACATGTGAAACACCCTCAAGAGTTCTTTTTCCTCCATTTGAGCTGGCTTCCCATTGTAGTA]




>consensus_9651#2
ACCTCCCCACTTGAACATTAGGGTCATCACTGGCACGGGACATGCGAACTGCCATAAATA
AAAAGCTTCAAATGGTTGCTAGAAATTTAAATCTTTTTGAGATGGTAGTTCCTCCATTGT
CTTCAATATATATCCCTCTTGTAAGGATTAGTATGTAGGGTTAATTATCTTTAGTTGCTG
GCTAGTAATGGCCTTAGGTCTTTTTAGGGACTCCACCTAGCTACCTTGTAGTTATGTATG
CATACTGCTAGTAGTATGTGTATAAATAGGGAACCATGGAGTGGTTTTTCCCTCTTTGGT
GCACATGTGAAACACCCTCAAGAGTTCTTTTTCCTCCATTTGAGCTGGCTTCCCATTGTA
GTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9651#0      CCAACCCACCGCTACCCTCTTCTCGCCGCAAGCGAGGCGAGCCAAGCAAACGCGAGGCCG 60
consensus_9651#2      ------------------------------------------------------------
consensus_9651#1      ------------------------------------------------------------
                                                                                  

consensus_9651#0      ACGACGACGACGAGGAGGAGGAAGCGCAGCCACTAGTCGCGGCGGCGGCGGCGGCGGCGG 120
consensus_9651#2      ------------------------------------------------------------
consensus_9651#1      ------------------------------------------------------------
                                                                                  

consensus_9651#0      CGGCGGGTGATCGGAGGAGGGATGGTGGGGCTTGTGGGAGGAGGAGGTTGGAGGGTCGGG 180
consensus_9651#2      ------------------------------------------------------------
consensus_9651#1      ------------------------------------------------------------
                                                                                  

consensus_9651#0      GATGATGCGGCGGGTGGGGGTGGGGGAGGAGCGGTGGCGGCGGGGGCTGCGGCGGCGGCG 240
consensus_9651#2      ------------------------------------------------------------
consensus_9651#1      ------------------------------------------------------------
                                                                                  

consensus_9651#0      GAGGCGGAGCACATGCGGAGGCTCCACAGCCACGCCCCCGGCGAGCACCAGTGCAGCTCC 300
consensus_9651#2      ------------------------------------------------------------
consensus_9651#1      ------------------------------------------------------------
                                                                                  

consensus_9651#0      GCGCTCGTCAAGCACATCAAGGCTCCTGTTCACCTCGTGTGGTCGCTGGTGCGGAGCTTC 360
consensus_9651#2      ------------------------------------------------------------
consensus_9651#1      ------------------------------------------------------------
                                                                                  

consensus_9651#0      GACCAGCCGCAGAGGTACAAGCCGTTCGTCAGCCGCTGCGTCGTGCGCGGCGGCGACCTC 420
consensus_9651#2      ------------------------------------------------------------
consensus_9651#1      ------------------------------------------------------------
                                                                                  

consensus_9651#0      GAGATCGGCAGCGTGCGCGAGGTCAACGTCAAGACCGGCCTCCCGGCGACCACCAGCACG 480
consensus_9651#2      ------------------------------------------------------------
consensus_9651#1      ------------------------------------------------------------
                                                                                  

consensus_9651#0      GAGAGGCTCGAGCTGCTCGACGACGACGAGCACATCCTCAGCGTCAAGTTCGTCGGCGGC 540
consensus_9651#2      ------------------------------------------------------------
consensus_9651#1      ------------------------------------------------------------
                                                                                  

consensus_9651#0      GACCACCGCCTCAGGAACTACTCATCCATCGTAACTGTCCATCCGGAGAGCATCGATGGA 600
consensus_9651#2      ------------------------------------------------------------
consensus_9651#1      ------------------------------------------------------------
                                                                                  

consensus_9651#0      AGACCAGGGACGCTTGTGATTGAATCATTTGTGGTGGACGTGCCTGATGGAAATACAAAG 660
consensus_9651#2      ------------------------------------------------------------
consensus_9651#1      --GGGGGCTGCGGCGGCGGCGGAGGCGGAGCACATGCGGAGGCTCCACAGCCACGCCCCC 58
                                                                                  

consensus_9651#0      GACGAGACATGCTACTTTGTCGAGGCCGTGATCAAGTGCAACTTAACATCT-CTCGCCGA 719
consensus_9651#2      ------------------------------------------------------------
consensus_9651#1      GGCGAG---CACCAGTGCAGCTCCGCGCTCGTCAAGCACATCAAGGCTCCTGTTCACCTC 115
                                                                                  

consensus_9651#0      GGTATCAGAGCGGCTAGCAGTTCAGTCACCCACCTCGCCACTTGAACAGTAGGGTCATCA 779
consensus_9651#2      -------------------------------ACCTCCCCACTTGAACATTAGGGTCATCA 29
consensus_9651#1      GTGAGTTCCACGACTCACGACGCCTTCCATCCTCTTTTTTTTTCTGTTCTTCGTTTGGTG 175
                                                       **      **      *  * *     

consensus_9651#0      CTGGCACGGGACATGCGAACTGGCATGAATAAGAAGCTTCAAATGGTTGCTAG--AGATT 837
consensus_9651#2      CTGGCACGGGACATGCGAACTGCCATAAATAAAAAGCTTCAAATGGTTGCTAG--AAATT 87
consensus_9651#1      TTTGTTCGATTGGTTGCGTTTGGTTTGGCTACTTGGCTC--GGTGGTTGCTCCTTGGATC 233
                       * *  **     *      **   *   **    ***     ********      ** 

consensus_9651#0      TAAATCTTTTTGAGATGGTAGTTCCTCCATTGTCTTCGATATATATGCCTCTTGTAAGGA 897
consensus_9651#2      TAAATCTTTTTGAGATGGTAGTTCCTCCATTGTCTTCAATATATATCCCTCTTGTAAGGA 147
consensus_9651#1      TGAATTTTTTTTATACT-TTGTTTTGGCGCTGGGTTTGGTGCTCGTGCGGCTCGGTTTGA 292
                      * *** ***** * *   * ***    *  **  **   *     * *  ** *    **

consensus_9651#0      TTAGTATGTAGGGTTAATTATCTTTAGTTG-CTGGCTAGTGATGGGCTTAGGTCTTTTTA 956
consensus_9651#2      TTAGTATGTAGGGTTAATTATCTTTAGTTG-CTGGCTAGTAATGGCCTTAGGTCTTTTTA 206
consensus_9651#1      TGCGTAGCTGTTGCCTGAGATATTTGTTCGGTTGATTGGTACTAGCTCGAATTGAATGTG 352
                      *  ***  *   *      ** ***  * *  **  * **  * *    *  *   * * 

consensus_9651#0      GGGACTGCACCTAGCTACCTTGTAGTTATGTATGCATACTGCTAGTAGTATGTGTATAAA 1016
consensus_9651#2      GGGACTCCACCTAGCTACCTTGTAGTTATGTATGCATACTGCTAGTAGTATGTGTATAAA 266
consensus_9651#1      CGAATTTCGCCGTGTT-TTTGGCCGCTCGAGATCCCAAAATTGTATGGGATGT-TTTGAC 410
                       * * * * **  * *   * *  * *    ** *  *       * * **** * * * 

consensus_9651#0      TAGGGAAGCATGGAGTGGTTTTTGCCTCTTTGGTGCACATGTGAAACAACCTCAAGAGTT 1076
consensus_9651#2      TAGGGAACCATGGAGTGGTTTTTCCCTCTTTGGTGCACATGTGAAACACCCTCAAGAGTT 326
consensus_9651#1      TTG----TTTCTTCGCGGCATCTGCTTGGTTGATTGTATTGTTGGTGA----TGGGAGTA 462
                      * *           * **  * * * *  *** *     ***     *       **** 

consensus_9651#0      CTTTTTCCTGCAAAAAAAAAAAAAA------------ 1101
consensus_9651#2      CTTTTTCCTCCATTTGAGCTGGCTTCCCATTGTAGTA 363
consensus_9651#1      TTTGATTGTTTGATCGACTGATCCACCCCT------- 492
                       **  *  *       *