These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9651#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1101 fasta sequence [CCAACCCACCGCTACCCTCTTCTCGCCGCAAGCGAGGCGAGCCAAGCAAACGCGAGGCCGACGACGACGACGAGGAGGAGGAAGCGCAGCCACTAGTCGCGGCGGCGGCGGCGGCGGCGGCGGCGGGTGATCGGAGGAGGGATGGTGGGGCTTGTGGGAGGAGGAGGTTGGAGGGTCGGGGATGATGCGGCGGGTGGGGGTGGGGGAGGAGCGGTGGCGGCGGGGGCTGCGGCGGCGGCGGAGGCGGAGCACATGCGGAGGCTCCACAGCCACGCCCCCGGCGAGCACCAGTGCAGCTCCGCGCTCGTCAAGCACATCAAGGCTCCTGTTCACCTCGTGTGGTCGCTGGTGCGGAGCTTCGACCAGCCGCAGAGGTACAAGCCGTTCGTCAGCCGCTGCGTCGTGCGCGGCGGCGACCTCGAGATCGGCAGCGTGCGCGAGGTCAACGTCAAGACCGGCCTCCCGGCGACCACCAGCACGGAGAGGCTCGAGCTGCTCGACGACGACGAGCACATCCTCAGCGTCAAGTTCGTCGGCGGCGACCACCGCCTCAGGAACTACTCATCCATCGTAACTGTCCATCCGGAGAGCATCGATGGAAGACCAGGGACGCTTGTGATTGAATCATTTGTGGTGGACGTGCCTGATGGAAATACAAAGGACGAGACATGCTA-CTTTGTCGAGGCCGTGATCAAGTGCAACTTAACATCTCTCGCCGAGGTATCAGAGCGGCTAGCAGTTCAGTCACCCACCTCGCCACTTGAACAGTAGGGTCATCACTGGCACGGGACATGCGAACTGGCATGAATAAGAAGCTTCAAATGGTTGCTAGAGATTTAAATCTTTTTGAGATGGTAGTTCCTCCATTGTCTTCGATATATATGCCTCTTGTAAGGATTAGTATGTAGGGTTAATTATCTTTAGTTGCTGGCTAGTGATGGGCTTAGGTCTTTTTAGGGACTGCACCTAGCTACCTTGTAGTTATGTATGCATACTGCTAGTAGTATGTGTATAAATAGGGAAGCATGGAGTGGTTTTTGCCTCTTTGGTGCACATGTGAAACAACCTCAAGAGTTCTTTTTCCTGCAAAAAAAAAAAAAA] [+] EMBL AK065280 [CCAACCCACCGCTACCCTCTTCTCGCCGCAAGCGAGGCGAGCCAAGCAAACGCGAGGCCGACGACGACGACGAGGAGGAGGAAGCGCAGCCACTAGTCGCGGCGGCGGCGGCGGCGGCGGCGGCGGGTGATCGGAGGAGGGATGGTGGGGCTTGTGGGAGGAGGAGGTTGGAGGGTCGGGGATGATGCGGCGGGTGGGGGTGGGGGAGGAGCGGTGGCGGCGGGGGCTGCGGCGGCGGCGGAGGCGGAGCACATGCGGAGGCTCCACAGCCACGCCCCCGGCGAGCACCAGTGCAGCTCCGCGCTCGTCAAGCACATCAAGGCTCCTGTTCACCTCGTGTGGTCGCTGGTGCGGAGCTTCGACCAGCCGCAGAGGTACAAGCCGTTCGTCAGCCGCTGCGTCGTGCGCGGCGGCGACCTCGAGATCGGCAGCGTGCGCGAGGTCAACGTCAAGACCGGCCTCCCGGCGACCACCAGCACGGAGAGGCTCGAGCTGCTCGACGACGACGAGCACATCCTCAGCGTCAAGTTCGTCGGCGGCGACCACCGCCTCAGGAACTACTCATCCATCGTAACTGTCCATCCGGAGAGCATCGATGGAAGACCAGGGACGCTTGTGATTGAATCATTTGTGGTGGACGTGCCTGATGGAAATACAAAGGACGAGACATGCTA CTTTGTCGAGGCCGTGATCAAGTGCAACTTAACATCTCTCGCCGAGGTATCAGAGCGGCTAGCAGTTCAGTCACCCACCTCGCCACTTGAACAGTAGGGTCATCACTGGCACGGGACATGCGAACCGGCATGAATAAGAAGCTTCAAATGGTTGCTAGAGATTTAAATCTTTTTGAGATGGTAGTTCCTCCATTGTCTTCGATATATATGCCTCTTGTAAGGATTAGTATGTAGGGTTAATTATCTTTAGTTGCTGGCTAGTGATGGGCTTAGGTCTTTTTAGGGACTGCACCTAGCTACCTTGTAGTTATGTATGCATACTGCTAGTAGTATGTGTATAAATAGGGAAGCATGGAGTGGTTTTTGCCTCTTTGGTGCACATGTGAAACAACCTCAAGAGTTC ] [+] EMBL AU174816 [ AGCACATGCGGAGGCTCCACAGCCACGCCCCCGGCGAGCACCAGTGCAGCTCCGCGCTCGTCAAGCACATCAAGGCTCCTGTTCACCTCGTGTGGTCGCTGGTGCGGAGCTTCGACCAGCCGCAGAGGTACAAGCCGTTCGTCAGCCGCTGCGTCGTGCGCGGCGGCGACCTCGAGATCGGCAGCGTGCGCGAGGTCAACGTCAAGACCGGCCTCCCGGCGACCACCAGCACGGAGAGGCTCGAGCTGCTCGACGACGACGAGCACATCCTCAGCGTCAAGTTCGTCGGCGGCGACCACCGCCTCAGGAACTACTCATCCATCGTAACTGTCCATCCGGAGAGCATCGATGGAAGACCAGGGACGCTTGTGATTGAATCATTTGTGGTGGACGTG ] [-] EMBL CB684685 [ TGTGATTGAATCATTTGTGGGGAACGTGCCTGATGGAAATACAAAGGACGAGACATG TAGCTTTGTCGAGGCCGTGATCAAGTGCAACTTAACATCTCTCGCCGAGGTATCAGAGCGGCTAGCAGTTCAGTCACCCCCCTCGCCACTTGAACAGTAGGGTCATCACTGGCACGGGACATGCGAACTGGCATGAATAAGAAGCTTCAAATGGTTGCTAGAGATTTAAATCTTTTTGAGATGGTAGTTCCTCCATTGTCTTCGATATATATGCCTCTGGTAAGGATTAGTATGTAGGGTTAATTATCTTTAGCGGCGGGCTAGAGAgg ] [+] EMBL AU174815 [ CGTGCCTGATGGAAATACAAAGGNCGAGACATGCTA CTTTGTCGAGGCCGTGATCAAGTGCAACTTAACATCTCTCGCCGAGGTATCAGAGCGGCTAGCAGTTCAGTCACCCNCCTCGCCACTTGAACAGTAGGGTCATCNCTGGCACGGGACATGCGAACTGGCATGAATAAGAAGCTTCAAATGGTTGCTAGAGATTTAAATCTTTTTGAGATGGTAGTTCCTCCATTGTCTTCGATATATATGCCTCTTGTAAGGATTAGTATGTAGGGTTAATTATCTTTAGTTGCTGGCTAGTGATGGGCTTAGGTCTTTTTAGGGACTGCACCTAGCTACCTTGTAGTTATGTATGCATACTGCTAGTAGTATGTGTATAAATAGGGAAGCATGGAGTGGTTTTTGCCTCTTTGGTGCACATGTGAAACAACCTCAAGAGTTCTTTTTCCTGCAAAAAAAAAAAAAA] consensusID : consensus_9651#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 492 fasta sequence [GGGGGCTGCGGCGGCGGCGGAGGCGGAGCACATGCGGAGGCTCCACAGCCACGCCCCCGGCGAGCACCAGTGCAGCTCCGCGCTCGTCAAGCACATCAAGGCTCCTGTTCACCTCGTGAGTTCCACGACTCACGACGCCTTCCATCCTCTTTTTTTTTCTGTTCTTCGTTTGGTGTTTGTTCGATTGGTTGCGTTTGGTTTGGCTACTTGGCTCGGTGGTTGCTCCTTGGATCTGAATTTTTTTTATACTTTGTTTTGGCGCTGGGTTTGGTGCTCGTGCGGCTCGGTTTGATGCGTAGCTGTTGCCTGAGATATTTGTTCGGTTGATTGGTACTAGCTCGAATTGAATGTGCGAATTTCGCCGTGTTTTTGGCCGCTCGAGATCCCAAAATTGTATGGGATGTTTTGACTTGTTTCTTCGCGGCATCTGCTTGGTTGATTGTATTGTTGGTGATGGGAGTATTTGATTGTTTGATCGACTGATCCACCCCT] [+] EMBL CB641034 [GGGGGCTGCGGCGGCGGCGGAGGCGGAGCACATGCGGAGGCTCCACAGCCACGCCCCCGGCGAGCACCAGTGCAGCTCCGCGCTCGTCAAGCACATCAAGGCTCCTGTTCACCTCGTGAGTTCCACGACTCACGACGCCTTCCATCCTCTTTTTTTTTCTGTTCTTCGTTTGGTGTTTGTTCGATTGGTTGCGTTTGGTTTGGCTACTTGGCTCGGTGGTTGCTCCTTGGATCTGAATTTTTTTTATACTTTGTTTTGGCGCTGGGTTTGGTGCTCGTGCGGCTCGGTTTGATGCGTAGCTGTTGCCTGAGATATTTGTTCGGTTGATTGGTACTAGCTCGAATTGAATGTGCGAATTTCGCCGTGTTTTTGGCCGCTCGAGATCCCAAAATTGTATGGGATGTTTTGACTTGTTTCTTCGCGGCATCTGCTTGGTTGATTGTATTGTTGGTGATGGGAGTATTTGATTGTTTGATCGACTGATCCACCCCT] consensusID : consensus_9651#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 363 fasta sequence [ACCTCCCCACTTGAACATTAGGGTCATCACTGGCACGGGACATGCGAACTGCCATAAATAAAAAGCTTCAAATGGTTGCTAGAAATTTAAATCTTTTTGAGATGGTAGTTCCTCCATTGTCTTCAATATATATCCCTCTTGTAAGGATTAGTATGTAGGGTTAATTATCTTTAGTTGCTGGCTAGTAATGGCCTTAGGTCTTTTTAGGGACTCCACCTAGCTACCTTGTAGTTATGTATGCATACTGCTAGTAGTATGTGTATAAATAGGGAACCATGGAGTGGTTTTTCCCTCTTTGGTGCACATGTGAAACACCCTCAAGAGTTCTTTTTCCTCCATTTGAGCTGGCTTCCCATTGTAGTA] [-] EMBL CB684686 [ACCTCCCCACTTGAACATTAGGGTCATCACTGGCACGGGACATGCGAACTGCCATAAATAAAAAGCTTCAAATGGTTGCTAGAAATTTAAATCTTTTTGAGATGGTAGTTCCTCCATTGTCTTCAATATATATCCCTCTTGTAAGGATTAGTATGTAGGGTTAATTATCTTTAGTTGCTGGCTAGTAATGGCCTTAGGTCTTTTTAGGGACTCCACCTAGCTACCTTGTAGTTATGTATGCATACTGCTAGTAGTATGTGTATAAATAGGGAACCATGGAGTGGTTTTTCCCTCTTTGGTGCACATGTGAAACACCCTCAAGAGTTCTTTTTCCTCCATTTGAGCTGGCTTCCCATTGTAGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9651#0 CCAACCCACCGCTACCCTCTTCTCGCCGCAAGCGAGGCGAGCCAAGCAAACGCGAGGCCG 60 consensus_9651#2 ------------------------------------------------------------ consensus_9651#1 ------------------------------------------------------------ consensus_9651#0 ACGACGACGACGAGGAGGAGGAAGCGCAGCCACTAGTCGCGGCGGCGGCGGCGGCGGCGG 120 consensus_9651#2 ------------------------------------------------------------ consensus_9651#1 ------------------------------------------------------------ consensus_9651#0 CGGCGGGTGATCGGAGGAGGGATGGTGGGGCTTGTGGGAGGAGGAGGTTGGAGGGTCGGG 180 consensus_9651#2 ------------------------------------------------------------ consensus_9651#1 ------------------------------------------------------------ consensus_9651#0 GATGATGCGGCGGGTGGGGGTGGGGGAGGAGCGGTGGCGGCGGGGGCTGCGGCGGCGGCG 240 consensus_9651#2 ------------------------------------------------------------ consensus_9651#1 ------------------------------------------------------------ consensus_9651#0 GAGGCGGAGCACATGCGGAGGCTCCACAGCCACGCCCCCGGCGAGCACCAGTGCAGCTCC 300 consensus_9651#2 ------------------------------------------------------------ consensus_9651#1 ------------------------------------------------------------ consensus_9651#0 GCGCTCGTCAAGCACATCAAGGCTCCTGTTCACCTCGTGTGGTCGCTGGTGCGGAGCTTC 360 consensus_9651#2 ------------------------------------------------------------ consensus_9651#1 ------------------------------------------------------------ consensus_9651#0 GACCAGCCGCAGAGGTACAAGCCGTTCGTCAGCCGCTGCGTCGTGCGCGGCGGCGACCTC 420 consensus_9651#2 ------------------------------------------------------------ consensus_9651#1 ------------------------------------------------------------ consensus_9651#0 GAGATCGGCAGCGTGCGCGAGGTCAACGTCAAGACCGGCCTCCCGGCGACCACCAGCACG 480 consensus_9651#2 ------------------------------------------------------------ consensus_9651#1 ------------------------------------------------------------ consensus_9651#0 GAGAGGCTCGAGCTGCTCGACGACGACGAGCACATCCTCAGCGTCAAGTTCGTCGGCGGC 540 consensus_9651#2 ------------------------------------------------------------ consensus_9651#1 ------------------------------------------------------------ consensus_9651#0 GACCACCGCCTCAGGAACTACTCATCCATCGTAACTGTCCATCCGGAGAGCATCGATGGA 600 consensus_9651#2 ------------------------------------------------------------ consensus_9651#1 ------------------------------------------------------------ consensus_9651#0 AGACCAGGGACGCTTGTGATTGAATCATTTGTGGTGGACGTGCCTGATGGAAATACAAAG 660 consensus_9651#2 ------------------------------------------------------------ consensus_9651#1 --GGGGGCTGCGGCGGCGGCGGAGGCGGAGCACATGCGGAGGCTCCACAGCCACGCCCCC 58 consensus_9651#0 GACGAGACATGCTACTTTGTCGAGGCCGTGATCAAGTGCAACTTAACATCT-CTCGCCGA 719 consensus_9651#2 ------------------------------------------------------------ consensus_9651#1 GGCGAG---CACCAGTGCAGCTCCGCGCTCGTCAAGCACATCAAGGCTCCTGTTCACCTC 115 consensus_9651#0 GGTATCAGAGCGGCTAGCAGTTCAGTCACCCACCTCGCCACTTGAACAGTAGGGTCATCA 779 consensus_9651#2 -------------------------------ACCTCCCCACTTGAACATTAGGGTCATCA 29 consensus_9651#1 GTGAGTTCCACGACTCACGACGCCTTCCATCCTCTTTTTTTTTCTGTTCTTCGTTTGGTG 175 ** ** * * * consensus_9651#0 CTGGCACGGGACATGCGAACTGGCATGAATAAGAAGCTTCAAATGGTTGCTAG--AGATT 837 consensus_9651#2 CTGGCACGGGACATGCGAACTGCCATAAATAAAAAGCTTCAAATGGTTGCTAG--AAATT 87 consensus_9651#1 TTTGTTCGATTGGTTGCGTTTGGTTTGGCTACTTGGCTC--GGTGGTTGCTCCTTGGATC 233 * * ** * ** * ** *** ******** ** consensus_9651#0 TAAATCTTTTTGAGATGGTAGTTCCTCCATTGTCTTCGATATATATGCCTCTTGTAAGGA 897 consensus_9651#2 TAAATCTTTTTGAGATGGTAGTTCCTCCATTGTCTTCAATATATATCCCTCTTGTAAGGA 147 consensus_9651#1 TGAATTTTTTTTATACT-TTGTTTTGGCGCTGGGTTTGGTGCTCGTGCGGCTCGGTTTGA 292 * *** ***** * * * *** * ** ** * * * ** * ** consensus_9651#0 TTAGTATGTAGGGTTAATTATCTTTAGTTG-CTGGCTAGTGATGGGCTTAGGTCTTTTTA 956 consensus_9651#2 TTAGTATGTAGGGTTAATTATCTTTAGTTG-CTGGCTAGTAATGGCCTTAGGTCTTTTTA 206 consensus_9651#1 TGCGTAGCTGTTGCCTGAGATATTTGTTCGGTTGATTGGTACTAGCTCGAATTGAATGTG 352 * *** * * ** *** * * ** * ** * * * * * * consensus_9651#0 GGGACTGCACCTAGCTACCTTGTAGTTATGTATGCATACTGCTAGTAGTATGTGTATAAA 1016 consensus_9651#2 GGGACTCCACCTAGCTACCTTGTAGTTATGTATGCATACTGCTAGTAGTATGTGTATAAA 266 consensus_9651#1 CGAATTTCGCCGTGTT-TTTGGCCGCTCGAGATCCCAAAATTGTATGGGATGT-TTTGAC 410 * * * * ** * * * * * * ** * * * * **** * * * consensus_9651#0 TAGGGAAGCATGGAGTGGTTTTTGCCTCTTTGGTGCACATGTGAAACAACCTCAAGAGTT 1076 consensus_9651#2 TAGGGAACCATGGAGTGGTTTTTCCCTCTTTGGTGCACATGTGAAACACCCTCAAGAGTT 326 consensus_9651#1 TTG----TTTCTTCGCGGCATCTGCTTGGTTGATTGTATTGTTGGTGA----TGGGAGTA 462 * * * ** * * * * *** * *** * **** consensus_9651#0 CTTTTTCCTGCAAAAAAAAAAAAAA------------ 1101 consensus_9651#2 CTTTTTCCTCCATTTGAGCTGGCTTCCCATTGTAGTA 363 consensus_9651#1 TTTGATTGTTTGATCGACTGATCCACCCCT------- 492 ** * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||