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Oryza sativa
cluster # 9653 cluster # 9653       Sequences # 6       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9653#0 length = 1308 sequences # 6  

consensusID : consensus_9653#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1308
fasta sequence
                              [TCGCCCGCCTCCGAGCAGTTGGGGAAGAGAACCGAAGCACAAACCCTAGCGGCGGCGCAGCTCAGCCGGGGTTTGCGGAGGAAGGGGAGGGGCACCGCCCGCGATGCTCGCGGCGTCGGCTCGGCGGGTGGCGGCCGCCGCCGCCGCGTCGTCCTCCCATTCCAGGCTCGCCAACCAGCTCGCCCACGCGCTGAATCCGCAGAGGTGGATCCATGACCGGAACAAGAAGGCGATGGAGTTGGTGGCCAAGGGGTGGAGCGCCCTGCAGGAGGTTGATCGCGTCATCGACTACGCCGACCGCAACGACAAGCGCCTGATCCCACTTCTCAGGGGTGCAAAGGAAAATTTTGAGCTGGCTCTGGAGATCGACAATATGAACACTCATGCGAGATTATGGCTTGCCAAGATGCATTTCAAGTATCATGTTCCTGGAGCTTGTAAGGCCATTGGTGCTGCTCTGTTGGTTGAAGCTGCAAACATGGGTGATCCAGATGCACAGTATGAACTTGGATGCCATTTGAGAATTGAGAATGACTACGTTCACTCTGACCAACAGGCTTTTTATTACATTGAGAAAGCTGTTGACCAGTTGCACCCTGGTGCTTTGTATCTTCTAGGTGCTGTATATTTAACTGGAGACTGTGTTAAGAGGGATATAGCTTCAGCAATGTGGTGTTTCCACAGAGCATCAGAAAAGGGACACTCTGGAGCTGCAATTGCATATGGATCACTTCTATTAAAAGGTGCTGAAGTGCCTGAGGTTATTACCAGGTTCAACTCAGGTAAGAGTCCATCAACTGGAAAGATGCGAAAAAGGCCCATACAGCA-GGATCCAGTGAAGC-TAGCAAAGGAGCAGTTTCAAA-TTGCAGCTGAAGCTGGATGTGATCTCGGTTTGCGATGGCTGAAGAGGCTTGGGGATTATGAAAAGCAGCAAGAACAACCAAAGCAAATCCAGCAATGACCACCTTCGAAATGATTTGCTTCACTTCGGCATTGCTCTATGTTGACATGCGTTTGTCATACACACTATACAGGTAGAACGTCAGATTCTCAACTGTAATCATGTAATTGAATCCAAGCACTATGTAAATTTTGATATCTGGCCCAACTCCTTGAAAAGGTAGACTTGAGTTGATCCCCTTTCTCTACAAAGGATTTTTATCGTACCAGTCCTTATAGAGTTCGTTACTTTGTTTTTTCACTTTTTCTCCCCAACTGTCTACTGGTATAACCTGTTACATGTCCCTTAATTATTCCCCGGTGTGTCAGAAAAGTGTTTAAATTCAAGCATACATGAAAAAACTGGAC]

[+] EMBL AK068376             [TCGCCCGCCTCCGAGCAGTTGGGGAAGAGAACCGAAGCACAAACCCTAGCGGCGGCGCAGCTCAGCCGGGGTTTGCGGAGGAAGGGGAGGGGCACCGCCCGCGATGCTCGCGGCGTCGGCTCGGCGGGTGGCGGCCGCCGCCGCCGCGTCGTCCTCCCATTCCAGGCTCGCCAACCAGCTCGCCCACGCGCTGAATCCGCAGAGGTGGATCCATGACCGGAACAAGAAGGCGATGGAGTTGGTGGCCAAGGGGTGGAGCGCCCTGCAGGAGGTTGATCGCGTCATCGACTACGCCGACCGCAACGACAAGCGCCTGATCCCACTTCTCAGGGGTGCAAAGGAAAATTTTGAGCTGGCTCTGGAGATCGACAATATGAACACTCATGCGAGATTATGGCTTGCCAAGATGCATTTCAAGTATCATGTTCCTGGAGCTTGTAAGGCCATTGGTGCTGCTCTGTTGGTTGAAGCTGCAAACATGGGTGATCCAGATGCACAGTATGAACTTGGATGCCATTTGAGAATTGAGAATGACTACGTTCACTCTGACCAACAGGCTTTTTATTACATTGAGAAAGCTGTTGACCAGTTGCACCCTGGTGCTTTGTATCTTCTAGGTGCTGTATATTTAACTGGAGACTGTGTTAAGAGGGATATAGCTTCAGCAATGTGGTGTTTCCACAGAGCATCAGAAAAGGGACACTCTGGAGCTGCAATTGCATATGGATCACTTCTATTAAAAGGTGCTGAAGTGCCTGAGGTTATTACCAGGTTCAACTCAGGTAAGAGTCCATCAACTGGAAAGATGCGAAAAAGGCCCATACAGCA GGATCCAGTGAAGC TAGCAAAGGAGCAGTTTCAAA TTGCAGCTGAAGCTGGATGTGATCTCGGTTTGCGATGGCTGAAGAGGCTTGGGGATTATGAAAAGCAGCAAGAACAACCAAAGCAAATCCAGCAATGACCACCTTCGAAATGATTTGCTTCACTTCGGCATTGCTCTATGTTGACATGCGTTTGTCATACACACTATACAGGTAGAACGTCAGATTCTCAACTGTAATCATGTAATTGAATCCAAGCACTATGTAAATTTTGATATCTGGCCCAACTCCTTGAAAAGGTAGACTTGAGTTGATCCCCTTTCTCTACAAAGGATTTTTATCGTACCAGTCCTTATAGAGTTCGTTACT                                                                                                                      ]
[+] EMBL AK101844             [                            GAACCGAAGCACAAACCCTAGCGGCGGCGCAGCTCAGCCGGGGTTTGCGGAGGAAGGGGAGGGGCACCGCCCGCGATGCTCGCGGCGTCGGCTCGGCGGGTGGCGGCCGCCGCCGCCGCGTCGTCCTCCCATTCCAGGCTCGCCAACCAGCTCGCCCACGCGCTGAATCCGCAGAGGTGGATCCATGACCGGAACAAGAAGGCGATGGAGTTGGTGGCCAAGGGGTGGAGCGCCCTGCAGGAGGTTGATCGCGTCATCGACTACGCCGACCGCAACGACAAGCGCCTGATCCCACTTCTCAGGGGTGCAAAGGAAAATTTTGAGCTGGCTCTGGAGATCGACAATATGAACACTCATGCGAGATTATGGCTTGCCAAGATGCATTTCAAGTATCATGTTCCTGGAGCTTGTAAGGCCATTGGTGCTGCTCTGTTGGTTGAAGCTGCAAACATGGGTGATCCAGATGCACAGTATGAACTTGGATGCCATTTGAGAATTGAGAATGACTACGTTCACTCTGACCAACAGGCTTTTTATTACATTGAGAAAGCTGTTGACCAGTTGCACCCTGGTGCTTTGTATCTTCTAGGTGCTGTATATTTAACTGGAGACTGTGTTAAGAGGGATATAGCTTCAGCAATGTGGTGTTTCCACAGAGCATCAGAAAAGGGACACTCTGGAGCTGCAATTGCATATGGATCACTTCTATTAAAAGGTGCTGAAGTGCCTGAGGTTATTACCAGGTTCAACTCAGGTAAGAGTCCATCAACTGGAAAGATGCGAAAAAGGCCCATACAGCA GGATCCAGTGAAGC TAGCAAAGGAGCAGTTTCAAA TTGCAGCTGAAGCTGGATGTGATCTCGGTTTGCGATGGCTGAAGAGGCTTGGGGATTATGAAAAGCAGCAAGAACAACCAAAGCAAATCCAGCAATGACCACCTTCGAAATGATTTGCTTCACTTCGGCATTGCTCTATGTTGACATGCGTTTGTCATACACACTATACAGGTAGAACGTCAGATTCTCAACTGTAATCATGTAATTGAATCCAAGCACTATGTAAATTTTGATATCTGGCCCAACTCCTTGAAAAGGTAGACTTGAGTTGATCCCCTTTCTCTACAAAGGATTTTTATCGTACCAGTCCTTATAGAGTTCGTTACTTTGTTTTTTCACTTTTTCTCCCCAACTGTCTACTGGTATAACCTGTTACATGTCCCTTAATTATTCCCCGGTGTGTCAGAAAAGTGTTTAAATTCAAGCATACATGAAAAAACTGGAC]
[+] EMBL AK099277             [                            GAACCGAAGCACAAACCCTAGCGGCGGCGCAGCTCAGCCGGGGTTTGCGGAGGAAGGGGAGGGGCACCGCCCGCGATGCTCGCGGCGTCGGCTCGGCGGGTGGCGGCCGCCGCCGCCGCGTCGTCCTCCCATTCCAGGCTCGCCAACCAGCTCGCCCACGCGCTGAATCCGCAGAGGTGGATCCATGACCGGAACAAGAAGGCGATGGAGTTGGTGGCCAAGGGGTGGAGCGCCCTGCAGGAGGTTGATCGCGTCATCGACTACGCCGACCGCAACGACAAGCGCCTGATCCCACTTCTCAGGGGTGCAAAGGAAAATTTTGAGCTGGCTCTGGAGATCGACAATATGAACACTCATGCGAGATTATGGCTTGCCAAGATGCATTTCAAGTATCATGTTCCTGGAGCTTGTAAGGCCATTGGTGCTGCTCTGTTGGTTGAAGCTGCAAACATGGGTGATCCAGATGCACAGTATGAACTTGGATGCCATTTGAGAATTGAGAATGACTACGTTCACTCTGACCAACAGGCTTTTTATTACATTGAGAAAGCTGTTGACCAGTTGCACCCTGGTGCTTTGTATCTTCTAGGTGCTGTATATTTAACTGGAGACTGTGTTAAGAGGGATATAGCTTCAGCAATGTGGTGTTTCCACAGAGCATCAGAAAAGGGACACTCTGGAGCTGCAATTGCATATGGATCACTTCTATTAAAAGGTGCTGAAGTGCCTGAGGTTATTACCAGGTTCAACTCAGGTAAGAGTCCATCAACTGGAAAGATGCGAAAAAGGCCCATACAGCA GGATCCAGTGAAGC TAGCAAAGGAGCAGTTTCAAA TTGCAGCTGAAGCTGGATGTGATCTCGGTTTGCGATGGCTGAAGAGGCTTGGGGATTATGAAAAGCAGCAAGAACAACCAAAGCAAATCCAGCAATGACCACCTTCGAAATGATTTGCTTCACTTCGGCATTGCTCTATGTTGACATGCGTTTGTCATACACACTATACAGGTAGAACGTCAGATTCTCAACTGTAATCATGTAATTGAATCCAAGCACTATGTAAATTTTGATATCTGGCCCAACTCCTTGAAAAGGTAGACTTGAGTTGATCCCCTTTCTCTACAAAGGATTT                                                                                                                                                      ]
[-] EMBL AU175049             [                                                                                                                                                    TCGTCCTCCCATTCCAGGCTCGCCAACCAGCTCGCCCACGCGCTGAATCCGCAGAGGTGGATCCATGACCGGAACAAGAAGGCGATGGAGTTGGTGGCCAAGGGGTGGAGCGCCCTGCAGGAGGTTGATCGCGTCATCGACTACGCCGACCGCAACGACAAGCGCCTGATCCCACTTCTCAGGGGTGCAAAGGAAAATTTTGAGCTGGCTCTGGAGATCGACAATATGAACACTCATGCGAGATTATGGCTTGCCAAGATGCATTTCAAGTATCATGTTCCTGGAGCTTGTAAGGCCATTGGTGCTGCTCTGTTGGTTGAAGCTGCAAACATGGGTGATCCAGATGCACAGTATGAACTTGGATGCCATTTGAGAATTGAGAATGACTACGTTCACTCTGACCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CF303248             [                                                                                                                                                                                       CCACGCGCTGAATCCGCAGAGGTGGATCCATGACCGGAACAAGAAGGCGATGGAGTTGGTGGCCAAGGGGTGGAGCGCCCTGCAGGAGGTTGATCGCGTCATCGACTACGCCGACCGCAACGACAAGCGCCTGATCCCACTTCTCAGGGGTGCAAAGGAAAATTTTGAGCTGGCTCTGGAGATCGACAATATGAACACTCATGCGAGATTATGGCTTGCCAAGATGCATTTCAAGTATCATGTTCCTGGAGCTTGTAAGGCCATTGGTGCTGCTCTGTTGGTTGAAGCTGCAAACATGGGTGATCCAGATGCACAGTATGAACTTGGATGCCATTTGAGAATTGAGAATGACTACGTTCACTCTGACCAACAGGCTTTTTATTACATTGAGAAAGCTGTTGACCAGTTGCACCCTGGTGCTTTGTATCTTCTAGGTGCTGTATATTTAACTGGAGACTGTGTTAAGAGGGATATAGCTTCAGCAATGTGGTGTTTCCACAGAGCATCAGAAAAGGGACACTCTGGAGCTGCAATTGCATATGGATCACTTCTATTAAAAGGTGCTGAAGTGCCTGAGGTTATTACCAGGTTCAACTCAGGTAAGAGTCCATCAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL C28698               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                cCCCANACAGCAGGGATCCAGTGAAGCTTAGCAAAGGAGCAGTTTNAAATTTGCA CTGAAGCTGGATGTGATCTCGGTTTGCGATGGCTGAAGAGGCTTGGGGATTATGAAAAGCAGCAAGAACAACCAAAGCAAATCCAGCAATGACCACCTTCGAAATGATTTGCTTCACTTCGGCATTGCTCTATGTTGACATGCGTTTGTCATACACACTATACAGGTAGAACGTCAGATTCTCAACTGTAATCATGTAATTGAATCCAAGCACTATGTAAATTTTGATATCTGGCCCAACTCCTTGAAAAGGTAGACTTGAGTTGATCCCCTTTCTCTACAAAGGATTTTTATCGTACCAGTCCTTATAGAGTTCGTTACTTTGTTTTTTCACTTTTTCTCCCCAACTGTCTACTGGT                                                                                 ]


>consensus_9653#0 TCGCCCGCCTCCGAGCAGTTGGGGAAGAGAACCGAAGCACAAACCCTAGCGGCGGCGCAG CTCAGCCGGGGTTTGCGGAGGAAGGGGAGGGGCACCGCCCGCGATGCTCGCGGCGTCGGC TCGGCGGGTGGCGGCCGCCGCCGCCGCGTCGTCCTCCCATTCCAGGCTCGCCAACCAGCT CGCCCACGCGCTGAATCCGCAGAGGTGGATCCATGACCGGAACAAGAAGGCGATGGAGTT GGTGGCCAAGGGGTGGAGCGCCCTGCAGGAGGTTGATCGCGTCATCGACTACGCCGACCG CAACGACAAGCGCCTGATCCCACTTCTCAGGGGTGCAAAGGAAAATTTTGAGCTGGCTCT GGAGATCGACAATATGAACACTCATGCGAGATTATGGCTTGCCAAGATGCATTTCAAGTA TCATGTTCCTGGAGCTTGTAAGGCCATTGGTGCTGCTCTGTTGGTTGAAGCTGCAAACAT GGGTGATCCAGATGCACAGTATGAACTTGGATGCCATTTGAGAATTGAGAATGACTACGT TCACTCTGACCAACAGGCTTTTTATTACATTGAGAAAGCTGTTGACCAGTTGCACCCTGG TGCTTTGTATCTTCTAGGTGCTGTATATTTAACTGGAGACTGTGTTAAGAGGGATATAGC TTCAGCAATGTGGTGTTTCCACAGAGCATCAGAAAAGGGACACTCTGGAGCTGCAATTGC ATATGGATCACTTCTATTAAAAGGTGCTGAAGTGCCTGAGGTTATTACCAGGTTCAACTC AGGTAAGAGTCCATCAACTGGAAAGATGCGAAAAAGGCCCATACAGCAGGATCCAGTGAA GCTAGCAAAGGAGCAGTTTCAAATTGCAGCTGAAGCTGGATGTGATCTCGGTTTGCGATG GCTGAAGAGGCTTGGGGATTATGAAAAGCAGCAAGAACAACCAAAGCAAATCCAGCAATG ACCACCTTCGAAATGATTTGCTTCACTTCGGCATTGCTCTATGTTGACATGCGTTTGTCA TACACACTATACAGGTAGAACGTCAGATTCTCAACTGTAATCATGTAATTGAATCCAAGC ACTATGTAAATTTTGATATCTGGCCCAACTCCTTGAAAAGGTAGACTTGAGTTGATCCCC TTTCTCTACAAAGGATTTTTATCGTACCAGTCCTTATAGAGTTCGTTACTTTGTTTTTTC ACTTTTTCTCCCCAACTGTCTACTGGTATAACCTGTTACATGTCCCTTAATTATTCCCCG GTGTGTCAGAAAAGTGTTTAAATTCAAGCATACATGAAAAAACTGGAC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)