cluster # 9655

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Oryza sativa
cluster # 9655 cluster # 9655 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9655#0 length = 812 sequences # 3

consensus_9655#1 length = 701 sequences # 3

consensusID : consensus_9655#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 812
fasta sequence

                              [TCCCCCGGCGCCGGCGAGGCAAACCAGTCCAAAACCCTAACAGCCCCGCTCTATTCGTTTGCCAAGATGAGGTCAATCCGAGCGGCGCAAGCTCTGGCCTCCCGCTCGCTGCTCCTCTCCTCGCGCGCTCTCCATGGGGACGCCGCCTCCACGGCGGCGGCCGCGGCGGGCGGCGGGAGATTGGGCGTCCAGCCGTCGCCCCCATCCCAGGCATCATCATCATCATCCTCGCGGGCCATGCCAGCTGGAATCGCTGGGGCGGTCTCCTTCTCCCTGACCTTCGCGACGATGGC-GGCGGCGGAGGCCAAGGAAAGGCCGCCCATGGATCTGCTGCCGCAGAACGTGGTGCTGTACCAGTACCAGGCCTGCCCCTTCTGCAACAAAGTCAGAGCTTTCCTAGACTATCATGATATACCCTACAAGGTTGTGGAAGTTAATCCATTGAGCAAGAAGGAAATCAAGTGGTCTGAGTACAAGAAGGTCCCAATACTGATGGTAGATGGTGAACAGCTGGTTGATTCATCAGGTTACATTCATTTCATATTGGTTTATTCCGGTCTGGTTCCTTTACATTGTTGTGGTTTCAACTTTTAAGTAAAATAACTTTTTATGTGTTAAACTCCGGAGTTAACGTATTGTTACATCTGTTGTTGGTAGATATAATCAATATATTACAGCAAAGGGTCCGCCCTGATGATAAAGCCACTAATGAAGAGGAAGAAAAATGGCGCAGGTGGGTTGATGAGCACCTTGTGCATGTCTTGTCGCCAAATATATATCGGACAACTTCAGAGGCCTTGGAATCTTTTGAT]

[+] EMBL CB685658             [TCCCCCGGCGCCGGCGAGGCAAACCAGTCCAAAACCCTAACAGCCCCGCTCTATTCGTTTGCCAAGATGAGGTCAATCCGAGCGGCGCAAGCTCTGGCCTCCCGCTCGCTGCTCCTCTCCTCGCGCGCTCTCCATGGGGACGCCGCCTCCACGGCGGCGGCCGCGGCGGGCGGCGGGAGATTGGGCGTCCAGCCGTCGCCCCCATCCCAGGCATCATCATCATCATCCTCGCGGGCCATGCCAGCTGGAATCGCTGGGGCGGTCTCCTTCTCCCTGACCTTCGCGACGATGGC GGCGGCGGAGGCCAAGGAAAGGCCGCCCATGGATCTGCTGCCGCAGAACGTGGTGCTGTACCAGTACCAGGCCTGCCCCTTCTGCAACAAAGTCAGAGCTTTCCTAGACTATCATGATATACCCTACAAGGTTGTGGAAGTTAATCCATTGAGCAAGAAGGAAATCAAGTGGTCTGAGTACAAGAAGGTCCCAATACTGATGGTAGATGGTGAACAGCTGGTTGATTCATCAGGTTACATTCATTTCATATTGGTTTATTCCGGTCTGGTTCCTTTACATTGTTGTGGTTTCAACTTTTAAGTAAAATAACTTTTTATGTGTTAAACTCCGGAGTTAACGTATTGTTACATCTGTTGTTGGTAGATATAATCAATATATTACAGCAAAGGGTCCGCC                                                                                                                          ]
[+] EMBL AU181035             [                                                                                                                                                                                                               CAGGCATCATCATCATCATCCTCGCGGGCCATGCCAGCTGGAATCGCTGGGGCGGTCTCCTTCTCCCTGACCTTCGCGACGATGGCNGGCGGCGGAGGCCAAGGAAAGGCCGCCCATGGATCTGCTGCCGCAGAACGTGGTGCTGTACCAGTACCAGGCCTGCCCCTTCTGCAACAAAGTCAGAGCTTTCCTAGACTATCATGATATACCCTACAAGGTTGTGGAAGTTAATCCATTGAGCAAGAAGGAAATCAAGTGGTCTGAGTACAAGAAGGTCCCAA                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CB685659             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TCTGGTTCCTTTACATTGTTGTGGTTTCAACTTTTAAGTAAAATAACTTTTTATGTGTTAAACTCCAGAGTTAACGTATTGTTACATCTGTTGTTGGTAGATATAATCAATATATTACAGCAAAGGGTCCGCCCTGATGATAAAGCCACTAATGAAGAGGAAGAAAAATGGCGCAGGTGGGTTGATGAGCACCTTGTGCATGTCTTGTCGCCAAATATATATCGGACAACTTCAGAGGCCTTGGAATCTTTTGAT]




>consensus_9655#0
TCCCCCGGCGCCGGCGAGGCAAACCAGTCCAAAACCCTAACAGCCCCGCTCTATTCGTTT
GCCAAGATGAGGTCAATCCGAGCGGCGCAAGCTCTGGCCTCCCGCTCGCTGCTCCTCTCC
TCGCGCGCTCTCCATGGGGACGCCGCCTCCACGGCGGCGGCCGCGGCGGGCGGCGGGAGA
TTGGGCGTCCAGCCGTCGCCCCCATCCCAGGCATCATCATCATCATCCTCGCGGGCCATG
CCAGCTGGAATCGCTGGGGCGGTCTCCTTCTCCCTGACCTTCGCGACGATGGCGGCGGCG
GAGGCCAAGGAAAGGCCGCCCATGGATCTGCTGCCGCAGAACGTGGTGCTGTACCAGTAC
CAGGCCTGCCCCTTCTGCAACAAAGTCAGAGCTTTCCTAGACTATCATGATATACCCTAC
AAGGTTGTGGAAGTTAATCCATTGAGCAAGAAGGAAATCAAGTGGTCTGAGTACAAGAAG
GTCCCAATACTGATGGTAGATGGTGAACAGCTGGTTGATTCATCAGGTTACATTCATTTC
ATATTGGTTTATTCCGGTCTGGTTCCTTTACATTGTTGTGGTTTCAACTTTTAAGTAAAA
TAACTTTTTATGTGTTAAACTCCGGAGTTAACGTATTGTTACATCTGTTGTTGGTAGATA
TAATCAATATATTACAGCAAAGGGTCCGCCCTGATGATAAAGCCACTAATGAAGAGGAAG
AAAAATGGCGCAGGTGGGTTGATGAGCACCTTGTGCATGTCTTGTCGCCAAATATATATC
GGACAACTTCAGAGGCCTTGGAATCTTTTGAT

consensusID : consensus_9655#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 701
fasta sequence

                              [ATTCCTAAATCCGTCTCTTCTTCCGCCGGCGCCGGCGAGGCAAACCAGTCCAAAACCCTAACAGCCCCGCTCTATTCGTTTGCCAAGATGAGGTCAATCCGAGCGGCGCAAGCTCTGGCCTCCCGCTCGCTGCTCCTCTCCTCGCGCGCTCTCCATGGGGACGCCGCCTCCACGGCGGCGGCCGCGGCGGGCGGCGGGAGATTGGGCGTCCAGCCGTCGCCCCCATCCCAGGCATCATCATCATCATCCTCGCGGGCCATGCCAGCTGGAATCGCTGGGGCGGTCTCCTTCTCCCTGACCTTCGCGACGATGGCGGCGGCGGAGGCCAAGGAAAGGCCGCCCATGGATCTGCTGCCGCAGAACGTGGTGCTGTACCAGTACCAGGCCTGCCCCTTCTGCAACAAAGTCAGAGCCTTCCTAGACTATCATGATATACCCTACAAGGTTGTGGAAGTTAATCCATTGAGCAAGAAGGAAATCAAGTGGTCTGAGTACAAGAAGGTCCCAATACTGATGGTAGATGGTGAACAGCTGGTTGATTCATCAGATATAATCAATATATTACAGCAAAGGGTCCGCCCTGATGATAAAGCCACTAATGAAGAGGAAGAAAAATGGCGCAGGTGGGTTGATGAGCACCTTGTGCATGTCTTGTCGCCAAATATATATCGGACAACTTCAGAGGCCTTGGAATCTTTTGA]

[+] EMBL AK103892             [ATTCCTAAATCCGTCTCTTCTTCCGCCGGCGCCGGCGAGGCAAACCAGTCCAAAACCCTAACAGCCCCGCTCTATTCGTTTGCCAAGATGAGGTCAATCCGAGCGGCGCAAGCTCTGGCCTCCCGCTCGCTGCTCCTCTCCTCGCGCGCTCTCCATGGGGACGCCGCCTCCACGGCGGCGGCCGCGGCGGGCGGCGGGAGATTGGGCGTCCAGCCGTCGCCCCCATCCCAGGCATCATCATCATCATCCTCGCGGGCCATGCCAGCTGGAATCGCTGGGGCGGTCTCCTTCTCCCTGACCTTCGCGACGATGGCGGCGGCGGAGGCCAAGGAAAGGCCGCCCATGGATCTGCTGCCGCAGAACGTGGTGCTGTACCAGTACCAGGCCTGCCCCTTCTGCAACAAAGTCAGAGCCTTCCTAGACTATCATGATATACCCTACAAGGTTGTGGAAGTTAATCCATTGAGCAAGAAGGAAATCAAGTGGTCTGAGTACAAGAAGGTCCCAATACTGATGGTAGATGGTGAACAGCTGGTTGATTCATCAGATATAATCAATATATTACAGCAAAGGGTCCGCCCTGATGATAAAGCCACTAATGAAGAGGAAGAAAAATGGCGCAGGTGGGTTGATGAGCACCTTGTGCATGTCTTGTCGCCAAATATATATCGGACAACTTCAGAGGCCTTGGAATCTTTTGA]
[+] EMBL AK061168             [                                                                    GCTCTATTCGTTTGCCAAGATGAGGTCAATCCGAGCGGCGCAAGCTCTGGCCTCCCGCTCGCTGCTCCTCTCCTCGCGCGCTCTCCATGGGGACGCCGCCTCCACGGCGGCGGCCGCGGCGGGCGGCGGGAGATTGGGCGTCCAGCCGTCGCCCCCATCCCAGGCATCATCATCATCATCCTCGCGGGCCATGCCAGCTGGAATCGCTGGGGCGGTCTCCTTCTCCCTGACCTTCGCGACGATGGCGGCGGCGGAGGCCAAGGAAAGGCCGCCCATGGATCTGCTGCCGCAGAACGTGGTGCTGTACCAGTACCAGGCCTGCCCCTTCTGCAACAAAGTCAGAGCTTTCCTAGACTATCATGATATACCCTACAAGGTTGTGGAAGTTAATCCATTGAGCAAGAAGGAAATCAAGTGGTCTGAGTACAAGAAGGTCCCAATACTGATGGTAGATGGTGAACAGCTGGTTGATTCATCAGATATAATCAATATATTACAGCAAAGGGTCCGCCCTGATGATAAAGCCACTAATGAAGAGGAAGAAAAATGGCGCAGGTGGGTTGATGAGCACCTTGTGCATGTCTTGTCGCCAAATATATATCGGACAACTTCAGAGGCCTTGGAATCTTTTGA]
[+] EMBL C27995               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AGAAGGTCCCAATACTGACGGTAGATGGTGAACAGCTGGTTGATTCATCAGATATAATCAATATATTACAGCAAAGGGTCCGCCCTGATGATAAAGCCACTAATGAAGAGGAAGAAAAATGGCGCAGGTGGGTTGATGAGCACCTTGTGCATGTNTTGTCGCCAAATATATATCGGACAACTTCAGAGGCCTTGGAATCTTTTGA]




>consensus_9655#1
ATTCCTAAATCCGTCTCTTCTTCCGCCGGCGCCGGCGAGGCAAACCAGTCCAAAACCCTA
ACAGCCCCGCTCTATTCGTTTGCCAAGATGAGGTCAATCCGAGCGGCGCAAGCTCTGGCC
TCCCGCTCGCTGCTCCTCTCCTCGCGCGCTCTCCATGGGGACGCCGCCTCCACGGCGGCG
GCCGCGGCGGGCGGCGGGAGATTGGGCGTCCAGCCGTCGCCCCCATCCCAGGCATCATCA
TCATCATCCTCGCGGGCCATGCCAGCTGGAATCGCTGGGGCGGTCTCCTTCTCCCTGACC
TTCGCGACGATGGCGGCGGCGGAGGCCAAGGAAAGGCCGCCCATGGATCTGCTGCCGCAG
AACGTGGTGCTGTACCAGTACCAGGCCTGCCCCTTCTGCAACAAAGTCAGAGCCTTCCTA
GACTATCATGATATACCCTACAAGGTTGTGGAAGTTAATCCATTGAGCAAGAAGGAAATC
AAGTGGTCTGAGTACAAGAAGGTCCCAATACTGATGGTAGATGGTGAACAGCTGGTTGAT
TCATCAGATATAATCAATATATTACAGCAAAGGGTCCGCCCTGATGATAAAGCCACTAAT
GAAGAGGAAGAAAAATGGCGCAGGTGGGTTGATGAGCACCTTGTGCATGTCTTGTCGCCA
AATATATATCGGACAACTTCAGAGGCCTTGGAATCTTTTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9655#0      ---------------------TCCCCCGGCGCCGGCGAGGCAAACCAGTCCAAAACCCTA 39
consensus_9655#1      ATTCCTAAATCCGTCTCTTCTTCCGCCGGCGCCGGCGAGGCAAACCAGTCCAAAACCCTA 60
                                           *** ***********************************

consensus_9655#0      ACAGCCCCGCTCTATTCGTTTGCCAAGATGAGGTCAATCCGAGCGGCGCAAGCTCTGGCC 99
consensus_9655#1      ACAGCCCCGCTCTATTCGTTTGCCAAGATGAGGTCAATCCGAGCGGCGCAAGCTCTGGCC 120
                      ************************************************************

consensus_9655#0      TCCCGCTCGCTGCTCCTCTCCTCGCGCGCTCTCCATGGGGACGCCGCCTCCACGGCGGCG 159
consensus_9655#1      TCCCGCTCGCTGCTCCTCTCCTCGCGCGCTCTCCATGGGGACGCCGCCTCCACGGCGGCG 180
                      ************************************************************

consensus_9655#0      GCCGCGGCGGGCGGCGGGAGATTGGGCGTCCAGCCGTCGCCCCCATCCCAGGCATCATCA 219
consensus_9655#1      GCCGCGGCGGGCGGCGGGAGATTGGGCGTCCAGCCGTCGCCCCCATCCCAGGCATCATCA 240
                      ************************************************************

consensus_9655#0      TCATCATCCTCGCGGGCCATGCCAGCTGGAATCGCTGGGGCGGTCTCCTTCTCCCTGACC 279
consensus_9655#1      TCATCATCCTCGCGGGCCATGCCAGCTGGAATCGCTGGGGCGGTCTCCTTCTCCCTGACC 300
                      ************************************************************

consensus_9655#0      TTCGCGACGATGGCGGCGGCGGAGGCCAAGGAAAGGCCGCCCATGGATCTGCTGCCGCAG 339
consensus_9655#1      TTCGCGACGATGGCGGCGGCGGAGGCCAAGGAAAGGCCGCCCATGGATCTGCTGCCGCAG 360
                      ************************************************************

consensus_9655#0      AACGTGGTGCTGTACCAGTACCAGGCCTGCCCCTTCTGCAACAAAGTCAGAGCTTTCCTA 399
consensus_9655#1      AACGTGGTGCTGTACCAGTACCAGGCCTGCCCCTTCTGCAACAAAGTCAGAGCCTTCCTA 420
                      ***************************************************** ******

consensus_9655#0      GACTATCATGATATACCCTACAAGGTTGTGGAAGTTAATCCATTGAGCAAGAAGGAAATC 459
consensus_9655#1      GACTATCATGATATACCCTACAAGGTTGTGGAAGTTAATCCATTGAGCAAGAAGGAAATC 480
                      ************************************************************

consensus_9655#0      AAGTGGTCTGAGTACAAGAAGGTCCCAATACTGATGGTAGATGGTGAACAGCTGGTTGAT 519
consensus_9655#1      AAGTGGTCTGAGTACAAGAAGGTCCCAATACTGATGGTAGATGGTGAACAGCTGGTTGAT 540
                      ************************************************************

consensus_9655#0      TCATCAGGTTACATTCATTTCATATTGGTTTATTCCGGTCTGGTTCCTTTACATTGTTGT 579
consensus_9655#1      TCATCAG----------------------------------------------------- 547
                      *******                                                     

consensus_9655#0      GGTTTCAACTTTTAAGTAAAATAACTTTTTATGTGTTAAACTCCGGAGTTAACGTATTGT 639
consensus_9655#1      ------------------------------------------------------------
                                                                                  

consensus_9655#0      TACATCTGTTGTTGGTAGATATAATCAATATATTACAGCAAAGGGTCCGCCCTGATGATA 699
consensus_9655#1      ------------------ATATAATCAATATATTACAGCAAAGGGTCCGCCCTGATGATA 589
                                        ******************************************

consensus_9655#0      AAGCCACTAATGAAGAGGAAGAAAAATGGCGCAGGTGGGTTGATGAGCACCTTGTGCATG 759
consensus_9655#1      AAGCCACTAATGAAGAGGAAGAAAAATGGCGCAGGTGGGTTGATGAGCACCTTGTGCATG 649
                      ************************************************************

consensus_9655#0      TCTTGTCGCCAAATATATATCGGACAACTTCAGAGGCCTTGGAATCTTTTGAT 812
consensus_9655#1      TCTTGTCGCCAAATATATATCGGACAACTTCAGAGGCCTTGGAATCTTTTGA- 701
                      ****************************************************