These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9657#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1070 fasta sequence [GCCACCCGCGCGGATCGGTCGCTAAGCCGCCGAGAGACATGGCGCCCGCGACACAAATGGCAGCTCCACCACCACGCGCTCGCGGCGGCAGCTTCCGCGTCCTGCGCACCGCCCGCGTCGCGCCGTCGTCGCCCGACGGTGTCCCCATGTTGGTCGAGCGCGCCGTCCCGCTTACCTTCCTGGACGCGATCTGGCTCCCGACCCCGCCCGTCGACCGGGTCTTCTTCTATCGCCTCGGCGCCGACGACGACGGCGTCGACGCCGTCCTGTCCCGGCTGGCTGACTCGCTGTCCCGGGCGCTCCACGTCGTCTACCCGCTCGCCGGCCGCCTCCGCCTCACGCCGGGCAAGACCAACCGGTACGAGCTCTTCTACCAGCCAGGCGACGCCGTCGCCTTCACCTTCGCCGAGCACGACGACGGCGTCGGTGTCGACGAGCTGGCCGCGGACGACCCGAGGGAGGTCGCCAAGATCGCCCCGCTCGTGCCGGAGCTCCCGGATGGCGGCGCGGTGCTGGCCGTGCAGGCTACCGTGCTGCCCCCCGCGCGCCGCGGCCTCGCCCTCGGCGTCACCGTGCACCACGCCGCCTGCGACGGCTCGAGCTCCACGCACTTCCTCCACACCTGGGCCGCCGCCTGCGCCGGCGCCGCGGTGCTGCCGAAGCCGCCCGTCATCGACCGCACGTTCATCCGCGAACGTGAAGACCTCTATGACTACATGGTCAGTCGAACGGAGGAGTCTGACAAGTTCAGGTCGCCCGACGTCGCCGACAGCAAGCTCCTCGCCACTTTCACGCTGTCAGGAGAGATCCTTCAGAGCATCAAGGACAGAGTCGCCGGCGTGGCGGCGCGGCGCGGCAAGTCGCCGCCTCCTCGGTGCACGTCCGTCGTTGCGACGTTCGCCATCGTATGGCAATGCCACATCCGAGCCGCACTAGGCGACGTCGAAGCAGATAATAAGCACCATGGCCGTGCCCACTTCATCTTCCCCACCGATCACCGGGCGCGGATGGAACCCCGCGTCCCCGACAAGTACCTCGGCAACTGCGTCGGGCCATGCTTCGCCTCGGCG] [+] EMBL AK103708 [GCCACCCGCGCGGATCGGTCGCTAAGCCGCCGAGAGACATGGCGCCCGCGACACAAATGGCAGCTCCACCACCACGCGCTCGCGGCGGCAGCTTCCGCGTCCTGCGCACCGCCCGCGTCGCGCCGTCGTCGCCCGACGGTGTCCCCATGTTGGTCGAGCGCGCCGTCCCGCTTACCTTCCTGGACGCGATCTGGCTCCCGACCCCGCCCGTCGACCGGGTCTTCTTCTATCGCCTCGGCGCCGACGACGACGGCGTCGACGCCGTCCTGTCCCGGCTGGCTGACTCGCTGTCCCGGGCGCTCCACGTCGTCTACCCGCTCGCCGGCCGCCTCCGCCTCACGCCGGGCAAGACCAACCGGTACGAGCTCTTCTACCAGCCAGGCGACGCCGTCGCCTTCACCTTCGCCGAGCACGACGACGGCGTCGGTGTCGACGAGCTGGCCGCGGACGACCCGAGGGAGGTCGCCAAGATCGCCCCGCTCGTGCCGGAGCTCCCGGATGGCGGCGCGGTGCTGGCCGTGCAGGCTACCGTGCTGCCCCCCGCGCGCCGCGGCCTCGCCCTCGGCGTCACCGTGCACCACGCCGCCTGCGACGGCTCGAGCTCCACGCACTTCCTCCACACCTGGGCCGCCGCCTGCGCCGGCGCCGCGGTGCTGCCGAAGCCGCCCGTCATCGACCGCACGTTCATCCGCGAACGTGAAGACCTCTATGACTACATGGTCAGTCGAACGGAGGAGTCTGACAAGTTCAGGTCGCCCGACGTCGCCGACAGCAAGCTCCTCGCCACTTTCACGCTGTCAGGAGAGATCCTTCAGAGCATCAAGGACAGAGTCGCCGGCGTGGCGGCGCGGCGCGGCAAGTCGCCGCCTCCTCGGTGCACGTCCGTCGTTGCGACGTTCGCCATCGTATGGCAATGCCACATCCGAGCCGCACTAGGCGACGTCGAAGCAGATAATAAGCACCATGGCCGTGCCCACTTCATCTTCCCCACCGATCACCGGGCGCGGATGGAACCCCGCGTCCCCGACAAGTACCTCGGCAACTGCGTCGGGCCATGCTTCGCCTCGGCG] [+] EMBL OS0659A [ TCGTATGGCAATGCCACATCCGAGCCGCACTAGGCGACGTCGAAGCAGATAATAAGCACCATGGCCGTGCCCACTTCATCTTCCCCACCGATCACCGGGCGCGGATGGAACCCCGCGTCCCCGACAAGTACCTCGGCAACTGCGTCGGGCCATGCTTCGCCTCGGCG] consensusID : consensus_9657#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 330 fasta sequence [AGCTCGCTCGCTAGCCGGGAGACATGGCGCCCGCGACACAAATGGCAGCTCCACCACCTCGCGGCGGCAG-TTCCGCGTCCTGCGCACCGCTCGCGTCGCACCGTCGTCGCCCGACGGTGTCCCCTCGCTGCGCCA-CGTGCCGTCCCGCTCACCTTCCTGGACGCGATGTGGCTCCCGACCCCGCCCGTCGACCGGGTCTTCCTCTACCGCCTCGGCGCCGC-CGACGACGACGTCGACGCCGTCCTGTCCCGGCTGGCTGACTCGCTGTCCCGGGTGCTCCACGTCTTCTACCCGC-TCGCCGGNCGGCTTCGGCTNAATTCCGGCAAATAT] [+] EMBL AU181251 [AGCTCGCTCGCTAGCCGGGAGACATGGCGCCCGCGACACAAATGGCAGCTCCACCACCTCGCGGCGGCAGCTTCCGCGTCCTGCGCACCGCTCGCGTCGCACCGTCGTCGCCCGACGGTGTCCCCTCGCTGCGCCAGCGTGCCGTCCCGCTCACCTTCCTGGACGCGATGTGGCTCCCGACCCCGCCCGTCGACCGGGTCTTCCTCTACCGCCTCGGCGCCGC CGACGACGACGTCGACGCCGTCCTGTCCCGGCTGGCTGACTCGCTGTCCCGGGTGCTCCACGTCTTCTACCCGC TCGCCG ] [+] EMBL C26341 [ TCGCTAGCCGGGAGACATGGCGCCCGCGACACAAATNGCAGCTCCACCACCTCGNGGCGGCAG TTCCGCGTNCTGCGCACCGCTCGCGTNGCACCNTCNTNNCCCNACGGTGTCCCCTCGNTGCGCCA GTGCCGTCCCGCTCACCTTCCTGGACGCGATGTGGCTCCCGACCCCGCCCGTCGACCGGGTCTTCCTCTACCGCCTCGG GCCGCACG GACGACGT GACGCCGTCCTGTCCCGGCTGGCTGACTCGCTGTCCCGGGTNCTCCACGTCTTCTACCCGN TCG ] [+] EMBL C28305 [ GCTAGCCGGGAGACATGGCGCCCGCAACACAAATGGCAGCTCCACCACCTCGCGGCGGCAG TTCCGCGTCCTGCGCACCGCTCGCNTCGCACCGTCGTCGCCCGACGGTGTCCCCTCGCTGCGCCA CNTGCCGTCCCGCTCACCTTCCTGGACGCNATGTGGCTCCCGACCCCGCCCGTNGACCGGGTCTTCCTCTACCGCCTCGGCGCCG CGACGACGACGTGAACGCCGTCCTGTCCCGGCTGGCTGANTCGCTGTCCCGGGTGCTTCANGTCTTCTAACCGCTTCGCCGGNCGGCTTCGGCTNAATTCCGGCAAATAT] consensusID : consensus_9657#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 104 fasta sequence [CATTCCCCAGCCACCCGCGCGGTCNAAACGCTAAGCCGCCGAGAGACATGGCGCCCGCAGCACAAATGGCAGCTCCACCACCANAGACNCACGGCGTCAGATTN] [+] EMBL D42807 [CATTCCCCAGCCACCCGCGCGGTCNAAACGCTAAGCCGCCGAGAGACATGGCGCCCGCAGCACAAATGGCAGCTCCACCACCANAGACNCACGGCGTCAGATTN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9657#0 ---------GCCACCCGCGCGGATCGGTCGCTAAGCCGCCGAGAGACATGGCGCCCGCGA 51 consensus_9657#1 --------------------AGCTCGCTCGCTA----GCCGGGAGACATGGCGCCCGCGA 36 consensus_9657#2 CATTCCCCAGCCACCCGCGCGGTCNAAACGCTAAGCCGCCGAGAGACATGGCGCCCGCAG 60 * ***** **** **************** consensus_9657#0 CACAAATGGCAGCTCCACCACCACGCGCTCGCGGCGGCAGCTTCCGCGTCCTGCGCACCG 111 consensus_9657#1 CACAAATGGCAGCTCCACCACC------TCGCGGCGGCAG-TTCCGCGTCCTGCGCACCG 89 consensus_9657#2 CACAAATGGCAGCTCCACCACCANAGACNCACGGCGTCAGATTN---------------- 104 ********************** * ***** *** ** consensus_9657#0 CCCGCGTCGCGCCGTCGTCGCCCGACGGTGTCCCCATGTTGGTCGAGCGCGCCGTCCCGC 171 consensus_9657#1 CTCGCGTCGCACCGTCGTCGCCCGACGGTGTCCCCTCGCTGCGCCA-CGTGCCGTCCCGC 148 consensus_9657#2 ------------------------------------------------------------ consensus_9657#0 TTACCTTCCTGGACGCGATCTGGCTCCCGACCCCGCCCGTCGACCGGGTCTTCTTCTATC 231 consensus_9657#1 TCACCTTCCTGGACGCGATGTGGCTCCCGACCCCGCCCGTCGACCGGGTCTTCCTCTACC 208 consensus_9657#2 ------------------------------------------------------------ consensus_9657#0 GCCTCGGCGCCGACGACGACGGCGTCGACGCCGTCCTGTCCCGGCTGGCTGACTCGCTGT 291 consensus_9657#1 GCCTCGGCGCCGCCGACGACGACGTCGACGCCGTCCTGTCCCGGCTGGCTGACTCGCTGT 268 consensus_9657#2 ------------------------------------------------------------ consensus_9657#0 CCCGGGCGCTCCACGTCGTCTACCCGCTCGCCGGCCGCCTCCGCCTCACGCCGGGCAAGA 351 consensus_9657#1 CCCGGGTGCTCCACGTCTTCTACCCGCTCGCCGGNCGGCTTCGGCTNAATTCCGGCAAAT 328 consensus_9657#2 ------------------------------------------------------------ consensus_9657#0 CCAACCGGTACGAGCTCTTCTACCAGCCAGGCGACGCCGTCGCCTTCACCTTCGCCGAGC 411 consensus_9657#1 AT---------------------------------------------------------- 330 consensus_9657#2 ------------------------------------------------------------ consensus_9657#0 ACGACGACGGCGTCGGTGTCGACGAGCTGGCCGCGGACGACCCGAGGGAGGTCGCCAAGA 471 consensus_9657#1 ------------------------------------------------------------ consensus_9657#2 ------------------------------------------------------------ consensus_9657#0 TCGCCCCGCTCGTGCCGGAGCTCCCGGATGGCGGCGCGGTGCTGGCCGTGCAGGCTACCG 531 consensus_9657#1 ------------------------------------------------------------ consensus_9657#2 ------------------------------------------------------------ consensus_9657#0 TGCTGCCCCCCGCGCGCCGCGGCCTCGCCCTCGGCGTCACCGTGCACCACGCCGCCTGCG 591 consensus_9657#1 ------------------------------------------------------------ consensus_9657#2 ------------------------------------------------------------ consensus_9657#0 ACGGCTCGAGCTCCACGCACTTCCTCCACACCTGGGCCGCCGCCTGCGCCGGCGCCGCGG 651 consensus_9657#1 ------------------------------------------------------------ consensus_9657#2 ------------------------------------------------------------ consensus_9657#0 TGCTGCCGAAGCCGCCCGTCATCGACCGCACGTTCATCCGCGAACGTGAAGACCTCTATG 711 consensus_9657#1 ------------------------------------------------------------ consensus_9657#2 ------------------------------------------------------------ consensus_9657#0 ACTACATGGTCAGTCGAACGGAGGAGTCTGACAAGTTCAGGTCGCCCGACGTCGCCGACA 771 consensus_9657#1 ------------------------------------------------------------ consensus_9657#2 ------------------------------------------------------------ consensus_9657#0 GCAAGCTCCTCGCCACTTTCACGCTGTCAGGAGAGATCCTTCAGAGCATCAAGGACAGAG 831 consensus_9657#1 ------------------------------------------------------------ consensus_9657#2 ------------------------------------------------------------ consensus_9657#0 TCGCCGGCGTGGCGGCGCGGCGCGGCAAGTCGCCGCCTCCTCGGTGCACGTCCGTCGTTG 891 consensus_9657#1 ------------------------------------------------------------ consensus_9657#2 ------------------------------------------------------------ consensus_9657#0 CGACGTTCGCCATCGTATGGCAATGCCACATCCGAGCCGCACTAGGCGACGTCGAAGCAG 951 consensus_9657#1 ------------------------------------------------------------ consensus_9657#2 ------------------------------------------------------------ consensus_9657#0 ATAATAAGCACCATGGCCGTGCCCACTTCATCTTCCCCACCGATCACCGGGCGCGGATGG 1011 consensus_9657#1 ------------------------------------------------------------ consensus_9657#2 ------------------------------------------------------------ consensus_9657#0 AACCCCGCGTCCCCGACAAGTACCTCGGCAACTGCGTCGGGCCATGCTTCGCCTCGGCG 1070 consensus_9657#1 ----------------------------------------------------------- consensus_9657#2 ----------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||