These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9658#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2317 fasta sequence [CAATCCTCACCCCCGCCTCCCCTTTGTCCCTTTCCCACCGCCCCAAAAACCCACCCCCTCCCTGACTCCTCCCCCCGCAGCTTCCGCCGTCCGCCTCCGNTCCCACGTCGCCGCCCGCTCGTCGTCGCCGCCGGTGAGTCTCCTCCACTCCGTGCTCGCCCCCTCCGTACCCAGCAGCAGGATCGGATCGGTCGCGCGGGCGGCGGGGACGCTCTTGCGTGCTTATTTGTCAAATCAGATCTGAATATAATTTTAGGAGTTGCTTCAGCATGGATACTGGCTGCCTGTCATCTATGAACATAACTGGAA-CAGCCAAGCAAGATCTTTTGCGGGACAACTTCCTACTCATAGGTGCTTCGCAAGTAGCAGCATCCAAGCACTGAAAAGTAGTCAGCATGTGAGCTTTGGAGTGAAATCTNTTGTCTTAAGGAATAAAGGAAAAAGATTCCGTCGGAGGCTCGGTGCTCTACAGGTTGTTTGCCAGGACTTTCCAAGACCTCCACTAGAAAACACAATAAACTTTTTGGAAGCTGGACAACTATCCTCATTTTTCAGAAACAGTGAACAACCCACTAAACCATTACAGGTCGTGATTGCTGGAGCAGGATTAGCTGGTTTATCAACGGCAAAATATCTGGCAGATGCTGGTCATAAACCCATATTGCTTGAGGCAAGGGATGTTTTGGGTGGAAAGATAGCTGCTTGGAAGGATGAAGATGGAGATTGGTATGAAACTGGGCTTCATATCTTTTTTGGAGCTTATCCCAACATACAGAACTTGTTTGGCGAGCTTGGTATTAATGATCGGTTGCAATGGAAGGAACACTCCATGATATTTGCCATGCCAAACAAGCCAGGAGAATCCAGCCGGTTTGATTTTCCTGAAACATTGCCTGCACCCTTAAATGGAATATGGGCCATACTAAGAAACAATGAAATGCTAACTTGGCCAGAGAAGGTGAAGTTTGCTCTTGGACTTTTGCCAGCAATGGTTGGTGGCCAAGCTTATGTTGAAGCTCAAGATGGTTTTACTGTTTCTGAGTGGATGAAAAAGCAGGGTGTTCCTGATCGAGTGAACGATGAAGTTTTCATTGCAATGTCAAAGGCACTTAATTTCATAAATCCTGATGAGTTATCCATGCAGTGCATTCTGATTGCTTTAAACCGATTTCTTCAGGAGAAGCATGGTTCTAAGATGGCATTCTTGGATGGTAATCCTCCTGAAAGGTTATGCATGCCTATTGTTGACCATGTTCGCTCTTTGGGTGGTGAGGTTCGGCTGAATTCTCGTATTCAGAAAATAGAACTTAATCCTGATGGAACAGTGAAACACTTTGCACTTACCGATGGAACTCAAATAACTGGAGATGCTTATGTTTTTGCAACACCAGTTGATATCTTGAAGCTTCTTGTACCTCAAGAGTGGAAAGAAATATCTTATTTCAAGAAGCTGGAGAAGTTGGTGGGAGTTCCTGTTATAAATGTTCATATATGGTTTGATAGAAAACTGAAGAACACATATGACCACC-TTCTTTTCAGCAGGAGTTCACTTTTAAGTGTTTATGCGGACATGTCAGTAACTTGCAAGGAATACTATGATCCAAGCCGTTCAATGCTGGAGTTGGTCTTTGCTCCTGCAGAGGAATGGGTTGGACGGAGTGACACTGAAATCATCGAAGCAACTATGCAAGAGCTAGCCAAGCTATTTCCTGATGAAATTGCTGCTGATCAGAGTAAAGCAAAGATTCTGAAGTATCATGTTGTGAAGACACCAAGATCTGTTTACAAGACTATCCCGGACTGTGAACCTTGCCGACCTCTGCAAAGATCACCGATTGAAGGGTTCTATCTAGCTGGTGACTACACAAAGCAGAAATATTTGGCTTCGATGGAGGGTGCAGTTCTATCTGGGAAGCTTTGTGCTCAGTCTGTAGTGGAGGATTATAAAATGCTATCTCGTAGGAGCCTGAAAAGTCTGCAGTCCGAAGTTCCTGTTGCCTCCTAGTTGTAGTCAGGACTATTCCCAATGGTGTGTGTGTCATCATCCCCTAGTCAGTTTTTTTCTATTTAGTGGGTGCCCAACTCTCCACCAATTTACACATGATGGAACTTGAAAGATGCCTATTTTGGTCTTATCATATTTCTGTAAAGTTGATTTGTGACTGAGAGCTGATGCCGATATGCCATGCTGGAGAAAAAGAACATTATGTAAAACGACCTGCATAGTAATTCTTAGACTTTTGCAAAAGGCAAAAGGGGTAAAGCGACCTTTTTTTTCTATGTGAAGGGATTAAGAGACCTTAAAAAAAAAAAAAAA] [+] EMBL AU181269 [CAATCCTCACCCCCGCCTCCCCTTTGTCCCTTTCCCACCGCCCCAAAAACCCACCCCCTCCCTGACTCCTCCCCCCGCAGCTTCCGCCGTCCGCCTCCGNTCCCACGTCGCCGCCCGCTCGTCGTCGCCGCCGGTGAGTCTCCTCCACTCCGTGCTCGCCCCCTCCGTACCCAGCAGCAGGATCGGATCGGTCGCGCGGGCGGCGGGGACGCTCTTGCGTGCTTATTTGTCAAATCAGATCTGAATATAATTTTAGGAGTTGCTTCAGCATGGATACTGGCTGCCTGTCATCTATGAACATAACTGGAACCAGCCAAGCAAGATCTTTTGCGGGACAACTTCCTACTCATAGGTGCTTCGCAAGTAGCAGCATCCAAGCACTGAAAAGTAGTCAGCATGTGAGCTTTGGAGTGAAATCTNTTGTCT ] [+] EMBL AF049356 [ agcatctGCCAGATATTTTGCAGGACAACTTCCTACTCATAGGTGCTTCGCAAGTAGCAGCATCCAAGCACTGAAAGGTAGTCAGCATGTGAGCTTTGGAGTGAAATCTCTTGTCTTAAGGAATAAAGGAAAAAGATTCCGTCGGAGGCTCGGTGCTCTACAGGTTGTTTGCCAGGACTTTCCAAGACCTCCACTAGAAAACACAATAAACTTTTTGGAAGCTGGACAACTATCCTCATTTTTCAGAAACAGTGAACAACCCACTAAACCATTACAGGTCGTGATTGCTGGAGCAGGATTAGCTGGTTTATCAACGGCAAAATATCTGGCAGATGCTGGTCATAAACCCATATTGCTTGAGGCAAGGGATGTTTTGGGTGGAAAGATAGCTGCTTGGAAGGATGAAGATGGAGATTGGTATGAAACTGGGCTTCATATCTTTTTTGGAGCTTATCCCAACATACAGAACTTGTTTGGCGAGCTTGGTATTAATGATCGGTTGCAATGGAAGGAACACTCCATGATATTTGCCATGCCAAACAAGCCAGGAGAATCCAGCCGGTTTGATTTTCCTGAAACATTGCCTGCACCCTTAAATGGAATATGGGCCATACTAAGAAACAATGAAATGCTAACTTGGCCAGAGAAGGTGAAGTTTGCTCTTGGACTTTTGCCAGCAATGGTTGGTGGCCAAGCTTATGTTGAAGCTCAAGATGGTTTTACTGTTTCTGAGTGGATGAAAAAGCAGGGTGTTCCTGATCGAGTGAACGATGAAGTTTTCATTGCAATGTCAAAGGCACTTAATTTCATAAATCCTGATGAGTTATCCATGCAGTGCATTCTGATTGCTTTAAACCGATTTCTTCAGGAGAAGCATGGTTCTAAGATGGCATTCTTGGATGGTAATCCTCCTGAAAGGTTATGCATGCCTATTGTTGACCATGTTCGCTCTTTGGGTGGTGAGGTTCGGCTGAATTCTCGTATTCAGAAAATAGAACTTAATCCTGATGGAACAGTGAAACACTTTGCACTTACCGATGGAACTCAAATAACTGGAGATGCTTATGTTTTTGCAACACCAGTTGATATCTTGAAGCTTCTTGTACCTCAAGAGTGGAAAGAAATATCTTATTTCAAGAAGCTGGAGAAGTTGGTGGGAGTTCCTGTTATAAATGTTCATATATGGTTTGATAGAAAACTGAAGAACACATATGACCACC TTCTTTTCAGCAGGAGTTCACTTTTAAGTGTTTATGCGGACATGTCAGTAACTTGCAAGGAATACTATGATCCAAGCCGTTCAATGCTGGAGTTGGTCTTTGCTCCTGCAGAGGAATGGGTTGGACGGAGTGACACTGAAATCATCGAAGCAACTATGCAAGAGCTAGCCAAGCTATTTCCTGATGAAATTGCTGCTGATCAGAGTAAAGCAAAGATTCTGAAGTATCATGTTGTGAAGACACCAAGATCTGTTTACAAGACTATCCCGGACTGTGAACCTTGCCGACCTCTGCAAAGATCACCGATTGAAGGGTTCTATCTAGCTGGTGACTACACAAAGCAGAAATATTTGGCTTCGATGGAGGGTGCAGTTCTATCTGGGAAGCTTTGTGCTCAGTCTGTAGTGGAGGATTATAAAATGCTATCTCGTAGGAGCCTGAAAAGTCTGCAGTCCGAAGTTCCTGTTGCCTCCTAGTTGTAGTCAGGACTATTCCCAATGGTGTGTGTGTCATCATCCCCTAGTCAGTTTTTTTCTATTTAGTGGGTGCCCAACTCTCCACCAATTTACACATGATGGAACTTGAAAGATGCCTATTTTGGTCTTATCATATTTCTGTAAAGTTGATTTGTGACTGAGAGCTGATGCCGATATGCCACGCTGGAGAAAAAGAACATTATGTAAAACGACCTGCATAGTAATTCTTAGACTTTTGCAAAAGGCAAAAGGGGTAAAGCGACCTTTTTTTTCTATGTGAAGGGATTAAGAGACCTTAAAAAAAAAAAAAAA] [+] EMBL CB617962 [ CTGGCACATGCTGGTCATAAACCCATATTGCTTGAGGCAAGGGATGTTTTGGGTGGAAAGATAGCTGCTTGGAAGGATGAAGATGGAGATTGGTATGAAACTGGGCTTCATATCTTTTTTGGAGCTTATCCCAACATACAGAACTTGTTTGGCGAGCTTGGTATTAATGATCGGTTGCAATGGAAGGAACACTCCATGATATTTGCCATGCCAAACAAGCCAGGAGAATTCAGCCGGTTTGATTTTCCTGAAACATTGCCTGCACCCTTAAATGGAATATGGGCCATACTAAGAAACAATGAAATGCTAACTTGGCCAGAGAAGGTGAAGTTTGCTCTTGGACTTTTGCCAGCAATGGTTGGTGGCCAAGCTTATGTTGAAGCTCAAGATGGTTTTACTGTTTCTGAGTGGATGAAAAAGCAGGGTGTTCCTGATCGAGTGAACGATGAGGTTTTCATTGCAATGTCAAAGGCACTTAATTTCATAAATCCTGATGAGTTATCCATGCAGTGCATTCTGATTGCTTTAAACCGATTTCTTCAGGAGAAGCATGGTTCTAAGATGGCATTCTTGGATGGTAATCCTCCTGAAAGGTTATGCATGCCTATTGTTGACCATGTTCGCTCTTTGGGTGGTGAGGTTCGGCTGAATTCTCGTATTCAGAAAATAGAACTTAATCCTGATGGAACAGTGAAACACTTTGCACTTACCGATGGAACTCAAATAACTGGAGATGCTTATGTTTTTGCAACACCAGT ] [-] EMBL CB617963 [ TGATAGAAAACTGAAGAACACATATGCCCACCTTTTTTTTCAGCAGGAGTTCACTTTTAAGTGTTTATGCGGACATGTCAGTAACTTGCAAGGAATACTATGATCCAAACCGTTCAATGCTGGAGTTGGTCTTTGCTCCTGCAGAGGAATGGGTTGGACGGAGTGACACTGAAATCATCGAAGCAACTATGCAAGAGCTAGCCAAGCTATTTCCTGATGAAATTGCTGCTGATCAGAGTAAAGCAAAGATTCTGAAGTATCATGTTGTGAAGACACCAAGATCTGTTTACAAGACTATCCCGGACTGTGAACCTTGCCGCCCTCTGCAAAGATCACCGATTGAAGGGTTTTATTTAGCTGGTGACTACACAAAGCAGAAATATTTGGCTTCGATGGAGGGTGCAGTTCTATCTGGGAAGCTTTGTGCTCAGTCTGTAGTGGAGGATTATAAAATGCTATTTCGTAGGAGCCTGAAAAGTCTGCAGTCTGAAGTTCCTGTTGCCTCCTAGTTGTAGTCAGGACTATTCCCAATGGTGTGTGTGTCATCATCCCCTAGTCAGTTTTTTTTTATTTAGTGGGTGCCCAACTCTCCCCCAATTTACACATGATGGAACTTGAAAGATGCCTATTTTGGTCTTATCATATTTCTGTAAAGTTGATTTGTGACTGAGAGCTGATGCCGATATGCCATGCTGGAGAAAAAGACCATTATGTAAAACGCCCTGCATAGTAATTCTTA ] [+] EMBL AK058668 [ ATTTTGGTCTTATCATATTTCTGTAAAGTTGATTTGTGACTGAGAGCTGATGCCGATATGCCATGCTGGAGAAAAAGAACATTATGTAAAACGACCTGCATAGTAATTCTTAGACTTTTGCAAAAGGCAAAAGGGGTAAAGCGACC ] consensusID : consensus_9658#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 240 fasta sequence [CCCCCNTCTGANGGNCNGACCCACTGAGTCCAGAATGCATGTCCACTTCNTGANTTGCTATTAAACCAGATTTCTTCACGGACGAACGCACTGGTTCNTAACGNTGGCACTTCTTGGATGNTAATCCTCCATGAAAGGTTACTGCATGCCTATTGTTGACCATGTTCGCTCTTTGGGTGGTGAGGTTCGGCTGAATTCTCGTATTCAGAAAANANGAACATTAANTCCCNGATGGAACAG] [+] EMBL OSC27221 [CCCCCNTCTGANGGNCNGACCCACTGAGTCCAGAATGCATGTCCACTTCNTGANTTGCTATTAAACCAGATTTCTTCACGGACGAACGCACTGGTTCNTAACGNTGGCACTTCTTGGATGNTAATCCTCCATGAAAGGTTACTGCATGCCTATTGTTGACCATGTTCGCTCTTTGGGTGGTGAGGTTCGGCTGAATTCTCGTATTCAGAAAANANGAACATTAANTCCCNGATGGAACAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9658#0 CAATCCTCACCCCCGCCTCCCCTTTGTCCCTTTCCCACCGCCCCAAAAACCCACCCCCTC 60 consensus_9658#1 ------------------------------------------------------------ consensus_9658#0 CCTGACTCCTCCCCCCGCAGCTTCCGCCGTCCGCCTCCGNTCCCACGTCGCCGCCCGCTC 120 consensus_9658#1 ------------------------------------------------------------ consensus_9658#0 GTCGTCGCCGCCGGTGAGTCTCCTCCACTCCGTGCTCGCCCCCTCCGTACCCAGCAGCAG 180 consensus_9658#1 ------------------------------------------------------------ consensus_9658#0 GATCGGATCGGTCGCGCGGGCGGCGGGGACGCTCTTGCGTGCTTATTTGTCAAATCAGAT 240 consensus_9658#1 ------------------------------------------------------------ consensus_9658#0 CTGAATATAATTTTAGGAGTTGCTTCAGCATGGATACTGGCTGCCTGTCATCTATGAACA 300 consensus_9658#1 ------------------------------------------------------------ consensus_9658#0 TAACTGGAACAGCCAAGCAAGATCTTTTGCGGGACAACTTCCTACTCATAGGTGCTTCGC 360 consensus_9658#1 ------------------------------------------------------------ consensus_9658#0 AAGTAGCAGCATCCAAGCACTGAAAAGTAGTCAGCATGTGAGCTTTGGAGTGAAATCTNT 420 consensus_9658#1 ------------------------------------------------------------ consensus_9658#0 TGTCTTAAGGAATAAAGGAAAAAGATTCCGTCGGAGGCTCGGTGCTCTACAGGTTGTTTG 480 consensus_9658#1 ------------------------------------------------------------ consensus_9658#0 CCAGGACTTTCCAAGACCTCCACTAGAAAACACAATAAACTTTTTGGAAGCTGGACAACT 540 consensus_9658#1 ------------------------------------------------------------ consensus_9658#0 ATCCTCATTTTTCAGAAACAGTGAACAACCCACTAAACCATTACAGGTCGTGATTGCTGG 600 consensus_9658#1 ------------------------------------------------------------ consensus_9658#0 AGCAGGATTAGCTGGTTTATCAACGGCAAAATATCTGGCAGATGCTGGTCATAAACCCAT 660 consensus_9658#1 ------------------------------------------------------------ consensus_9658#0 ATTGCTTGAGGCAAGGGATGTTTTGGGTGGAAAGATAGCTGCTTGGAAGGATGAAGATGG 720 consensus_9658#1 ------------------------------------------------------------ consensus_9658#0 AGATTGGTATGAAACTGGGCTTCATATCTTTTTTGGAGCTTATCCCAACATACAGAACTT 780 consensus_9658#1 ------------------------------------------------------------ consensus_9658#0 GTTTGGCGAGCTTGGTATTAATGATCGGTTGCAATGGAAGGAACACTCCATGATATTTGC 840 consensus_9658#1 ------------------------------------------------------------ consensus_9658#0 CATGCCAAACAAGCCAGGAGAATCCAGCCGGTTTGATTTTCCTGAAACATTGCCTGCACC 900 consensus_9658#1 ------------------------------------------------------------ consensus_9658#0 CTTAAATGGAATATGGGCCATACTAAGAAACAATGAAATGCTAACTTGGCCAGAGAAGGT 960 consensus_9658#1 ------------------------------------------------------------ consensus_9658#0 GAAGTTTGCTCTTGGACTTTTGCCAGCAATGGTTGGTGGCCAAGCTTATGTTGAAGCTCA 1020 consensus_9658#1 ------------------------------------------------------------ consensus_9658#0 AGATGGTTTTACTGTTTCTGAGTGGATGAAAAAGCAGGGTGTTCCTGATCGAGTGAACGA 1080 consensus_9658#1 ------------------------------------------------------------ consensus_9658#0 TGAAGTTTTCATTGCAATGTCAAAGGCACTTAATTTCATAAATCCTGATGAGTTATCCAT 1140 consensus_9658#1 -------------CCCCCNTCTGANG-GNCNGACCCACTGAGTCCAGAATGCATGTCCAC 46 * ** * * * * * *** ** * **** consensus_9658#0 GCAGTGCATTCTGATTGCTTTAAACCGATTTCTTCA-GGAGAAGCA---TGGTTCTAA-- 1194 consensus_9658#1 TTCNTGANTTGCTATTA----AACCAGATTTCTTCACGGACGAACGCACTGGTTCNTAAC 102 ** ** *** ** * ********** *** * * ****** * consensus_9658#0 GATGGCA-TTCTTGGATGGTAATCCTCC-TGAAAGGTTA-TGCATGCCTATTGTTGACCA 1251 consensus_9658#1 GNTGGCACTTCTTGGATGNTAATCCTCCATGAAAGGTTACTGCATGCCTATTGTTGACCA 162 * ***** ********** ********* ********** ******************** consensus_9658#0 TGTTCGCTCTTTGGGTGGTGAGGTTCGGCTGAATTCTCGTATTCAGAAAATAGAAC--TT 1309 consensus_9658#1 TGTTCGCTCTTTGGGTGGTGAGGTTCGGCTGAATTCTCGTATTCAGAAAANANGAACATT 222 ************************************************** * * ** consensus_9658#0 AAT--CCTGATGGAACAGTGAAACACTTTGCACTTACCGATGGAACTCAAATAACTGGAG 1367 consensus_9658#1 AANTCCCNGATGGAACAG------------------------------------------ 240 ** ** ********** consensus_9658#0 ATGCTTATGTTTTTGCAACACCAGTTGATATCTTGAAGCTTCTTGTACCTCAAGAGTGGA 1427 consensus_9658#1 ------------------------------------------------------------ consensus_9658#0 AAGAAATATCTTATTTCAAGAAGCTGGAGAAGTTGGTGGGAGTTCCTGTTATAAATGTTC 1487 consensus_9658#1 ------------------------------------------------------------ consensus_9658#0 ATATATGGTTTGATAGAAAACTGAAGAACACATATGACCACCTTCTTTTCAGCAGGAGTT 1547 consensus_9658#1 ------------------------------------------------------------ consensus_9658#0 CACTTTTAAGTGTTTATGCGGACATGTCAGTAACTTGCAAGGAATACTATGATCCAAGCC 1607 consensus_9658#1 ------------------------------------------------------------ consensus_9658#0 GTTCAATGCTGGAGTTGGTCTTTGCTCCTGCAGAGGAATGGGTTGGACGGAGTGACACTG 1667 consensus_9658#1 ------------------------------------------------------------ consensus_9658#0 AAATCATCGAAGCAACTATGCAAGAGCTAGCCAAGCTATTTCCTGATGAAATTGCTGCTG 1727 consensus_9658#1 ------------------------------------------------------------ consensus_9658#0 ATCAGAGTAAAGCAAAGATTCTGAAGTATCATGTTGTGAAGACACCAAGATCTGTTTACA 1787 consensus_9658#1 ------------------------------------------------------------ consensus_9658#0 AGACTATCCCGGACTGTGAACCTTGCCGACCTCTGCAAAGATCACCGATTGAAGGGTTCT 1847 consensus_9658#1 ------------------------------------------------------------ consensus_9658#0 ATCTAGCTGGTGACTACACAAAGCAGAAATATTTGGCTTCGATGGAGGGTGCAGTTCTAT 1907 consensus_9658#1 ------------------------------------------------------------ consensus_9658#0 CTGGGAAGCTTTGTGCTCAGTCTGTAGTGGAGGATTATAAAATGCTATCTCGTAGGAGCC 1967 consensus_9658#1 ------------------------------------------------------------ consensus_9658#0 TGAAAAGTCTGCAGTCCGAAGTTCCTGTTGCCTCCTAGTTGTAGTCAGGACTATTCCCAA 2027 consensus_9658#1 ------------------------------------------------------------ consensus_9658#0 TGGTGTGTGTGTCATCATCCCCTAGTCAGTTTTTTTCTATTTAGTGGGTGCCCAACTCTC 2087 consensus_9658#1 ------------------------------------------------------------ consensus_9658#0 CACCAATTTACACATGATGGAACTTGAAAGATGCCTATTTTGGTCTTATCATATTTCTGT 2147 consensus_9658#1 ------------------------------------------------------------ consensus_9658#0 AAAGTTGATTTGTGACTGAGAGCTGATGCCGATATGCCATGCTGGAGAAAAAGAACATTA 2207 consensus_9658#1 ------------------------------------------------------------ consensus_9658#0 TGTAAAACGACCTGCATAGTAATTCTTAGACTTTTGCAAAAGGCAAAAGGGGTAAAGCGA 2267 consensus_9658#1 ------------------------------------------------------------ consensus_9658#0 CCTTTTTTTTCTATGTGAAGGGATTAAGAGACCTTAAAAAAAAAAAAAAA 2317 consensus_9658#1 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||