cluster # 966

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Oryza sativa
cluster # 966 cluster # 966 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_966#0 length = 296 sequences # 1

consensus_966#1 length = 163 sequences # 1

consensusID : consensus_966#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 296
fasta sequence

                              [GGATCGATGGGAAACTGTTTTAAACACTCGGATAAACGTCTACCCATTTTTTACATGTCATCGATCAATCCCTGCATAATGCGTGGTAGCTCAGTTGCCTTATCAGCAGGCGACATTGATGAGGACGTTTTGTTCAGATTCGTAAAAGTCTGCTTTTTATTGAACGGAAATAGTATTAGCTATTTGCTAGCTAATACTACTATTAAGATTGAGAATAATAAGGGATGTAAGTGACAACTTTGTTGGTCGTCATGCATGTAAGATCGAGTTTATACAAGCTAGTTAACCTCAAAAAA]

[+] EMBL BI813749             [GGATCGATGGGAAACTGTTTTAAACACTCGGATAAACGTCTACCCATTTTTTACATGTCATCGATCAATCCCTGCATAATGCGTGGTAGCTCAGTTGCCTTATCAGCAGGCGACATTGATGAGGACGTTTTGTTCAGATTCGTAAAAGTCTGCTTTTTATTGAACGGAAATAGTATTAGCTATTTGCTAGCTAATACTACTATTAAGATTGAGAATAATAAGGGATGTAAGTGACAACTTTGTTGGTCGTCATGCATGTAAGATCGAGTTTATACAAGCTAGTTAACCTCAAAAAA]




>consensus_966#0
GGATCGATGGGAAACTGTTTTAAACACTCGGATAAACGTCTACCCATTTTTTACATGTCA
TCGATCAATCCCTGCATAATGCGTGGTAGCTCAGTTGCCTTATCAGCAGGCGACATTGAT
GAGGACGTTTTGTTCAGATTCGTAAAAGTCTGCTTTTTATTGAACGGAAATAGTATTAGC
TATTTGCTAGCTAATACTACTATTAAGATTGAGAATAATAAGGGATGTAAGTGACAACTT
TGTTGGTCGTCATGCATGTAAGATCGAGTTTATACAAGCTAGTTAACCTCAAAAAA

consensusID : consensus_966#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 163
fasta sequence

                              [GTTTTGTTCAGATTCGTAAAAGTCTGCTTTTTATTGAACGGAAATATATTAGCTATTTGCTAGCTAATACTACTATTAAGATTGAGAATAATAAGGGATGTAAGTGACACACTTTGTTGGTCGTCACATGCATGTAAGATCGAGTTTATAGCCAAAAAAAAAA]

[+] EMBL BI811688             [GTTTTGTTCAGATTCGTAAAAGTCTGCTTTTTATTGAACGGAAATATATTAGCTATTTGCTAGCTAATACTACTATTAAGATTGAGAATAATAAGGGATGTAAGTGACACACTTTGTTGGTCGTCACATGCATGTAAGATCGAGTTTATAGCCAAAAAAAAAA]




>consensus_966#1
GTTTTGTTCAGATTCGTAAAAGTCTGCTTTTTATTGAACGGAAATATATTAGCTATTTGC
TAGCTAATACTACTATTAAGATTGAGAATAATAAGGGATGTAAGTGACACACTTTGTTGG
TCGTCACATGCATGTAAGATCGAGTTTATAGCCAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_966#0      GGATCGATGGGAAACTGTTTTAAACACTCGGATAAACGTCTACCCATTTTTTACATGTCA 60
consensus_966#1      ------------------------------------------------------------
                                                                                 

consensus_966#0      TCGATCAATCCCTGCATAATGCGTGGTAGCTCAGTTGCCTTATCAGCAGGCGACATTGAT 120
consensus_966#1      ------------------------------------------------------------
                                                                                 

consensus_966#0      GAGGACGTTTTGTTCAGATTCGTAAAAGTCTGCTTTTTATTGAACGGAAATAGTATTAGC 180
consensus_966#1      ------GTTTTGTTCAGATTCGTAAAAGTCTGCTTTTTATTGAACGGAAATA-TATTAGC 53
                           ********************************************** *******

consensus_966#0      TATTTGCTAGCTAATACTACTATTAAGATTGAGAATAATAAGGGATGTAAGTGACA-ACT 239
consensus_966#1      TATTTGCTAGCTAATACTACTATTAAGATTGAGAATAATAAGGGATGTAAGTGACACACT 113
                     ******************************************************** ***

consensus_966#0      TTGTTGGTCGTCA--TGCATGTAAGATCGAGTTTATACAAGCTAGTTAACCTCAAAAAA 296
consensus_966#1      TTGTTGGTCGTCACATGCATGTAAGATCGAGTTTATA---GCCAAAAAA----AAAA-- 163
                     *************  **********************   ** *   **    ****