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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9663#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 845 fasta sequence
[TATCTCTCTCTCCTTCCTCCCCACACCTCTGCGGCTCTGGACCTCTCCACTCCCTCTCGCCGCCGCCGCCGCCGCCGCCGATCTGCCGCGCAATCCGGAGTCGCCACCCACCGTACCTCCCCGCGCGGCAGCATCCTTCCTCGCGCCGCGCGCGCGGCCGGCGAGAAGGTTTCGAGGCGGGGACGGAACGACGCGGCGGCCGTGGAGCTCGGTTCCACCTGCATCCATCTCGGTGGGGTTGGTGAAGTGGGGGGGCGAGGCGGCCGGGGATGGATAAGCTGGTGCAGTTCGGGAGGAAGGCGTGGTTCGTGGTGCGGGTGCTGTCCGGGTACGAGGAGAGGAGGATCCGTGCTCACAGGCTGCAGATGCAGCAGCGGATCGCGAGGGCCCAAGCTAAGAAGGAAGAGCTTCGGAAGCAGCCAGAACAAATTATTCTATCAGAAGTTCGTCAAATGGTTCAGCAGATGCAAGCCCTCAATCAGCAGCTTGAAGAAGCTGAAACCGCCATAGATGAATATTTCAAACCAATCGATAAGAATGCTAAGATCATAATGGACATGCAACTGGAGAAAGAAGAGAAGCAAATAAAGGAGATGACGAAAGTAATGCAAGATCAAATAGCAATGCAAAGAGAAATCGCAAGTAAGAGAGCTCAGGCCACCGCCATAGAGTCTAAAGACGCCCAAACGCAAACAAGTGACAAGATTGCTGAAGGCCCTCCAAAAGAAGAAACCATGAAATAAGTACTGGTCATTGTTAGTCTTTTTTTTTTTGTAAACAAGTATTATATGCCAGTGGATTCTTTACATAGGCTTTGCTGGGCTAGGCAATAATAAGTATGGATG]
[+] EMBL AK068094 [TATCTCTCTCTCCTTCCTCCCCACACCTCTGCGGCTCTGGACCTCTCCACTCCCTCTCGCCGCCGCCGCCGCCGCCGCCGATCTGCCGCGCAATCCGGAGTCGCCACCCACCGTACCTCCCCGCGCGGCAGCATCCTTCCTCGCGCCGCGCGCGCGGCCGGCGAGAAGGTTTCGAGGCGGGGACGGAACGACGCGGCGGCCGTGGAGCTCGGTTCCACCTGCATCCATCTCGGTGGGGTTGGTGAAGTGGGGGGGCGAGGCGGCCGGGGATGGATAAGCTGGTGCAGTTCGGGAGGAAGGCGTGGTTCGTGGTGCGGGTGCTGTCCGGGTACGAGGAGAGGAGGATCCGTGCTCACAGGCTGCAGATGCAGCAGCGGATCGCGAGGGCCCAAGCTAAGAAGGAAGAGCTTCGGAAGCAGCCAGAACAAATTATTCTATCAGAAGTTCGTCAAATGGTTCAGCAGATGCAAGCCCTCAATCAGCAGCTTGAAGAAGCTGAAACCGCCATAGATGAATATTTCAAACCAATCGATAAGAATGCTAAGATCATAATGGACATGCAACTGGAGAAAGAAGAGAAGCAAATAAAGGAGATGACGAAAGTAATGCAAGATCAAATAGCAATGCAAAGAGAAATCGCAAGTAAGAGAGCTCAGGCCACCGCCATAGAGTCTAAAGACGCCCAAACGCAAACAAGTGACAAGATTGCTGAAGGCCCTCCAAAAGAAGAAACCATGAAATAAGTACTGGTCATTGTTAGTCTTTTTTTTTTTGTAAACAAGTATTATATGCCAGTGGATTCTTTACATAGGCTTTGCTGGGCTAGGCAATAATAAGTATGGATG]
[+] EMBL AU181790 [ CTCTCGCCGCCGCCGCCGCCGCCGCCGATCTGCCGCGCAATCCGGAGTCGCCACCCACCGTACCTCCCCGCGCGGCAGCATCCTTCCTCGCGCCGCGCGCGCGGCCGGCGAGAAGGTTTCGAGGCGGGGACGGAACGACGCGGCGGCCGTGGAGCTCGGTTCCACCTGCATCCATCTCGGTGGGGTTGGTGAAGTGGGGGGGCGAGGCGGCCGGGGATGGATAAGCTGGTGCAGTTCGGGAGGAAGGCGTGGTTCGTGGTGCGGGTGCTGTCCGGGTACGAGGAGAGGAGGATCCGTGCTCACAGGCTGCAGATGCAGCAGCGGATCGCGAGGGCCCAAGCTAAGAAGGAAGAGCTTCGGAAGCAGCCAGAACAAATTATTCTATCAGAAGTTCGTCAAATGGTTCAGCAGATGCAAGCCCTCAATCAG ]
consensusID : consensus_9663#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 671 fasta sequence
[TAAGACATCCTGCCACAAAATAAAATTACCAAATCGATGTCTCAATGCCTGCATAGGAAATGTGTACTGTTGTTTTGAGAAAGAACATGTTAGTTTATGAACCATCTCACAACTTGAATCATGAATAATGCTTCAAGTTACCCCTGTGTACCTGACAGTAAGAGGTGGATTAGCCATCATGCTGTTGTATTATGAAGGACACCGTATCTTCTATGGTTTAATTGATTGTTTGGTTTACGTATTTGCCATGATTTTATAGGATGGAAATTTAGGTGTAACAGAATCAGACATGTTATTTACTTCTATGATATGCTTTTTTTTTTAATGTTTCTGGACCTTACATGCTAACTTATCCTCCATCCTATTTCACAGGAAACCGCCATAGATGAATATTTCAAACCAATCGATAAGAATGCTAAGATCATAATGGACATGCAACTGGAGAAAGAAGAGAAGCAAATAAAGGAGATGACGAAAGTAATGCAAGATCAAATAGCAATGCAAAGAGAAATCGCAAGTAAGAGAGCTCAGGCCACCGCCATAGAGTCTAAAGACGCCCAAACGCAAACAAGTGACAAGATTGCTGAAGGCCCTCCAAAAGAAGAAACCATGAAATAAGTACTGGTCATTGTTAGTCTTTTTTTTTTGTAAACAAGTATTATATGCCAGTG]
[-] EMBL CA998430 [TAAGACATCCTGCCACAAAATAAAATTACCAAATCGATGTCTCAATGCCTGCATAGGAAATGTGTACTGTTGTTTTGAGAAAGAACATGTTAGTTTATGAACCATCTCACAACTTGAATCATGAATAATGCTTCAAGTTACCCCTGTGTACCTGACAGTAAGAGGTGGATTAGCCATCATGCTGTTGTATTATGAAGGACACCGTATCTTCTATGGTTTAATTGATTGTTTGGTTTACGTATTTGCCATGATTTTATAGGATGGAAATTTAGGTGTAACAGAATCAGACATGTTATTTACTTCTATGATATGCTTTTTTTTTTAATGTTTCTGGACCTTACATGCTAACTTATCCTCCATCCTATTTCACAGGAAACCGCCATAGATGAATATTTCAAACCAATCGATAAGAATGCTAAGATCATAATGGACATGCAACTGGAGAAAGAAGAGAAGCAAATAAAGGAGATGACGAAAGTAATGCAAGATCAAATAGCAATGCAAAGAGAAATCGCAAGTAAGAGAGCTCAGGCCACCGCCATAGAGTCTAAAGACGCCCAAACGCAAACAAGTGACAAGATTGCTGAAGGCCCTCCAAAAGAAGAAACCATGAAATAAGTACTGGTCATTGTTAGTCTTTTTTTTTTGTAAACAAGTATTATATGCCAGT ]
[-] EMBL CB000456 [ TGGATTAGCCATCACGCTGGTGTATTATGAAGGACACCGTATATTCTATGGTATAATTGATTGTTTGGTTTACGTATTTGCCATGATTTTATAGGATGGAAATTTAGGTGTAACAGAATCAGACATGTTATTTACTTCTATGATATGCTTTTTTTTTTAATGTTTCTGGACCTTACAAAATAACTTATCCTCCATCCTATTTCACAGGAAACCGCCATAGATGAATATTTCAAACCAATCGATAAGAATGCTAAGATCATAATGGACATGCAACTGGAGAAAGAAGAGAAGCAAATAAAGGAGATGACGAAAGTAATGCAAGATCAAATAGCAATGCAAAGAGAAATCGCAAGTAAGAGAGCTCAGGCCACCGCCATAGAGTCTAAAGACGCCCAAACGCAAACAAGTGACCCGATTGCTGAAGGCCCTCCAAAAGAAGAAACCATGAAATAAGTACTGGTCATTGTTA AGGGTTTTTTTTGTAAACAAGTATTATATGCCAGTG]
consensusID : consensus_9663#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 616 fasta sequence
[CACAGGCTGCAGATGCAGCAGCAGATCGCGAGGGCCCAAGCTAAGAAGGAAGAGCTTCGGAAGCAGCCAGAACAAATTATTTTATCAGAGGTTCGTCAAATGGTGCAGCAGATGCAAGCCCTCAATCAGCAGCTTGAAGAAACTGAAACCGCCATAGATGAGTATTTCAAACCAATCGATAAGAATGCTAAGATCATAACGGACATGCACCCGGAGAAAGAAGAGAAGCAAATAAAGGAGATGACGAAAGTAATGCAAGATCAAATAGCAATGCAAAGAGAAATTGCAAGTAAGAGAGCTCAGGCCCCTGCCATAGAGTTTAAAGACACCCAAACGAGTGACAAGATTGCTGAAGGCCCTCCGAAAGAAGAAACCATGAAATAAGTACGGTTCATTGTTAGTCTATTTATTGTAAACAAGTATTATGTGCAAATGGATTCTTTACATAGGCTTTGGTGGGCTAGGCAATAAGTATGGATGCATGGGAGGACAGTTGCCATTTTTTGTCACTAACAGGAGGCTATCCTTTTTTTTGGCAGAGCTCTAACTAGTAACTAGTGTGCTTTACTATTCAAGATTGTGAAATCATGGAACATTTGTTCAATGTGATTGGGCC]
[-] EMBL CB682854 [CACAGGCTGCAGATGCAGCAGCAGATCGCGAGGGCCCAAGCTAAGAAGGAAGAGCTTCGGAAGCAGCCAGAACAAATTATTTTATCAGAGGTTCGTCAAATGGTGCAGCAGATGCAAGCCCTCAATCAGCAGCTTGAAGAAACTGAAACCGCCATAGATGAGTATTTCAAACCAATCGATAAGAATGCTAAGATCATAACGGACATGCACCCGGAGAAAGAAGAGAAGCAAATAAAGGAGATGACGAAAGTAATGCAAGATCAAATAGCAATGCAAAGAGAAATTGCAAGTAAGAGAGCTCAGGCCCCTGCCATAGAGTTTAAAGACACCCAAACGAGTGACAAGATTGCTGAAGGCCCTCCGAAAGAAGAAACCATGAAATAAGTACGGTTCATTGTTAGTCTATTTATTGTAAACAAGTATTATGTGCAAATGGATTCTTTACATAGGCTTTGGTGGGCTAGGCAATAAGTATGGATGCATGGGAGGACAGTTGCCATTTTTTGTCACTAACAGGAGGCTATCCTTTTTTTTGGCAGAGCTCTAACTAGTAACTAGTGTGCTTTACTATTCAAGATTGTGAAATCATGGAACATTTGTTCAATGTGATTGGGCC]
[+] EMBL CB682853 [ GCAGACTTAGCAGCAGATCGCGAGGGCCCAAGCTAAGAAGGAAGAGCTTCGGAAGCAGCCAGAACAAATTATTCTATCAGAGGTTCGTCAAATGGTGCAGCAGATGCAAGCCCTCAATCAGCAGCTTGAAGAAACTGAAACCGCCATAGATGAGTATTTCAAACCAATCGATAAGAATGCTAAGATCATAACGGACATGCAACCGGAGAAAGAAGAGAAGCAAATAAAGGAGATGACGAAAGTAATGCAAGATCAAATAGCAATGCAAAGAGAAATTGCAAGTAAGAGAGCTCAGGCCACTGCCATAGAGTCTAAAGACACCCAAACGAGTGACAAGATTGCTGAAGGCCCTCCGAAAGAAGAAACCATGAAATAAGTACGGTTCATTGTTAGTCTATTTATTGTAAACAAGTATTATGTGCAAATGGATTCTTTACATAGGCTTTGGTGGGCTAGGCAATAAGTATGGATGCATGGGAGGACAGTTGCCATTTTTTGTCACTAACAGGAGGCTATCCTTTTCTCTGGCAGAGCTCTAACTAGTAACTAGTGTGCTTTACTATTCAAGATTGTGAAATCATGGAACATTTGTTCAATGTGATT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9663#0 TATCTCTCTCTCCTTCCTCCCCACACCTCTGCGGCTCTGGACCTCTCCACTCCCTCTCGC 60
consensus_9663#2 ------------------------------------------------------------
consensus_9663#1 ------------------------------------------------------------
consensus_9663#0 CGCCGCCGCCGCCGCCGCCGATCTGCCGCGCAATCCGGAGTCGCCACCCACCGTACCTCC 120
consensus_9663#2 ------------------------------------------------------------
consensus_9663#1 ------------------------------------------------------------
consensus_9663#0 CCGCGCGGCAGCATCCTTCCTCGCGCCGCGCGCGCGGCCGGCGAGAAGGTTTCGAGGCGG 180
consensus_9663#2 ------------------------------------------------------------
consensus_9663#1 ----------TAAGACATCCTGCCACAAAATAAAATTACCAAATCGATGTCTCAATGCCT 50
consensus_9663#0 GGACGGAACGACGCGGCGGCCGTGGAGCTCGGTTCCACCTGCATCCATCTCGGTGGGGTT 240
consensus_9663#2 ------------------------------------------------------------
consensus_9663#1 GCATAGGAAATGTGTACTGTTGTTTTGAGAAAGAACATGTTAGTTTAT------GAACCA 104
consensus_9663#0 GGTGAAGTGGGGGGGCGAGGCGGCCGGGGATGGATAAGCTGGTGCAGTTCGGGAGGAAGG 300
consensus_9663#2 ------------------------------------------------------------
consensus_9663#1 TCTCACAACTTGAATCATGAATAATGCTTCAAGTTACCCCTGTGTACCTGACAGTAAGAG 164
consensus_9663#0 CGTGGTTCGTGGTGCGGGTGCTGTCCGGGTACGAGGAGAGGAGGATCCGTGCTC--ACAG 358
consensus_9663#2 -----------------------------------------------------C--ACAG 5
consensus_9663#1 GTGGATTAGCCATCATGCTGTTGTATTATGAAGGACACCGTATCTTCTATGGTTTAATTG 224
* *
consensus_9663#0 GCTGCA-GATGCAGCAGCGGATCGCGAGGGCCCAAGCTAAGAAGGAAGA-GCTTCGGAAG 416
consensus_9663#2 GCTGCA-GATGCAGCAGCAGATCGCGAGGGCCCAAGCTAAGAAGGAAGA-GCTTCGGAAG 63
consensus_9663#1 ATTGTTTGGTTTACGTATTTGCCATGATTTTATAGGATGGAAATTTAGGTGTAACAGAAT 284
** * * * * ** * * * ** ** * * ***
consensus_9663#0 CAGCCAGAACAAATTATTCTATCAGAAG----TTCGTCAAATGGTTCAGCAGAT-GCAAG 471
consensus_9663#2 CAGCCAGAACAAATTATTTTATCAGAGG----TTCGTCAAATGGTGCAGCAGAT-GCAAG 118
consensus_9663#1 CAGACATGTTATTTACTTCTATGATATGCTTTTTTTTTTAATGTTTCTGGACCTTACATG 344
*** ** * * ** *** * * * ** * **** * * * * * ** *
consensus_9663#0 CC--CTCAATCAGCAGCTTGAAGAAGCTGAAACCGCCATAGATGAATATTTCAAACCAAT 529
consensus_9663#2 CC--CTCAATCAGCAGCTTGAAGAAACTGAAACCGCCATAGATGAGTATTTCAAACCAAT 176
consensus_9663#1 CTAACTTATCCTCCATCCTATTTCACAGGAAACCGCCATAGATGAATATTTCAAACCAAT 404
* ** * * ** * * * ***************** **************
consensus_9663#0 CGATAAGAATGCTAAGATCATAATGGACATGCAACTGGAGAAAGAAGAGAAGCAAATAAA 589
consensus_9663#2 CGATAAGAATGCTAAGATCATAACGGACATGCACCCGGAGAAAGAAGAGAAGCAAATAAA 236
consensus_9663#1 CGATAAGAATGCTAAGATCATAATGGACATGCAACTGGAGAAAGAAGAGAAGCAAATAAA 464
*********************** ********* * ************************
consensus_9663#0 GGAGATGACGAAAGTAATGCAAGATCAAATAGCAATGCAAAGAGAAATCGCAAGTAAGAG 649
consensus_9663#2 GGAGATGACGAAAGTAATGCAAGATCAAATAGCAATGCAAAGAGAAATTGCAAGTAAGAG 296
consensus_9663#1 GGAGATGACGAAAGTAATGCAAGATCAAATAGCAATGCAAAGAGAAATCGCAAGTAAGAG 524
************************************************ ***********
consensus_9663#0 AGCTCAGGCCACCGCCATAGAGTCTAAAGACGCCCAAACGCAAACAAGTGACAAGATTGC 709
consensus_9663#2 AGCTCAGGCCCCTGCCATAGAGTTTAAAGACACCCAAACG------AGTGACAAGATTGC 350
consensus_9663#1 AGCTCAGGCCACCGCCATAGAGTCTAAAGACGCCCAAACGCAAACAAGTGACAAGATTGC 584
********** * ********** ******* ******** **************
consensus_9663#0 TGAAGGCCCTCCAAAAGAAGAAACCATGAAATAAGTACTGGTCATTGTTAGTCTTTTTTT 769
consensus_9663#2 TGAAGGCCCTCCGAAAGAAGAAACCATGAAATAAGTACGGTTCATTGTTAGTCTATTTA- 409
consensus_9663#1 TGAAGGCCCTCCAAAAGAAGAAACCATGAAATAAGTACTGGTCATTGTTAGTCTTTTTTT 644
************ ************************* * ************* ***
consensus_9663#0 TTTTGTAAACAAGTATTATATGCCAGTGGATTCTTTACATAGGCTTTGCTGGGCTAGGCA 829
consensus_9663#2 --TTGTAAACAAGTATTATGTGCAAATGGATTCTTTACATAGGCTTTGGTGGGCTAGGCA 467
consensus_9663#1 T-TTGTAAACAAGTATTATATGCCAGTG-------------------------------- 671
***************** *** * **
consensus_9663#0 ATAA-TAAGTATGGATG------------------------------------------- 845
consensus_9663#2 ATAAGTATGGATGCATGGGAGGACAGTTGCCATTTTTTGTCACTAACAGGAGGCTATCCT 527
consensus_9663#1 ------------------------------------------------------------
consensus_9663#0 ------------------------------------------------------------
consensus_9663#2 TTTTTTTGGCAGAGCTCTAACTAGTAACTAGTGTGCTTTACTATTCAAGATTGTGAAATC 587
consensus_9663#1 ------------------------------------------------------------
consensus_9663#0 -----------------------------
consensus_9663#2 ATGGAACATTTGTTCAATGTGATTGGGCC 616
consensus_9663#1 -----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||