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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9669#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1376 fasta sequence
[CATTTCTTCGAGCAGGTGAGGCGCACGCGCACTTCGCCGCTCCGCTGCACCCCCACGATGGCCTCCTCCCTCGCCGCGCGCCGCCTCCTCTCCCGCTCCGCCGCCGCCGCGTCCCGCCGCCTCGTCCCCTGCGCCTCGTCCGCGACCCCGCGCGCTGCCCCCGCTGCTCTGCGCCGCTTCTTCTCTGCGGAAGCCTCGACGCCGCCACCGACGCCGCCGACGCCACCACTCCCGCCGCCGCCTCTGGAGCCCACCGTCGAGCCGCCCAAGTCGGAGGGCGCCTCCTCCTCTTCCGCCTCGTCTTCCGCCGGCGCCGGAGGAGCCCATCGGTCGGCGCCGGGGGCCTCGGCGGGGGCTCGCCGCGCCGGCGGCACGGGCTACGAGGAGGAGCAGGAGAAAGTGCTCCGCGCGTCGCTGCTCCACGTGCCAAGGATGGGGTGGAGCGAGTCAGCCATGATCGCCGGGGCGAGGGACGTGGGCGTGTCGCCGGCCATCGTCGGTGCTTTCCCGAGGAAGGAGGCTGCGCTCGTTGAGTTTTTCATGGATGACTGCCTTCAACAACTCATTGATCGCATTGATGCTGGAGAGGGAGAGCTGTTGAAGAACTTGGTACTGAGTGAGAGACTTTCCAAACTTGTCCGAATGAGGCTGGAAATGCAGGGACCTTATATATCAAAGTGGCCTCAAGCTCTCAGTATCCAATCCCAACCAGCAAACATTTCAACAAGTTTAAAGCAGAGAGCTGTCCTTGTTGATGAGATTTGGCATGCTGCTGGAGATGCTGGATCAGATATTGATTGGTATGTGAA-GCGTACTGTGCTTGGTGGTATCTACTCTACCTCAGAGGTGTATATGTTAACTGACAATTCTCCAGATTTCCGCGATACATGGACATTTGTGAGCCGCCGTATCAAGGATGCTCTTGATCTTCAGAAAACTTTTCAGGAGGCCGCGTATCTAGCAGAAGCCGTCGGTGCAGGCA-TGGGGGGCTCCCTACAGGGTGTCCTGAACAGACTTTTCAAGAAATGAAGTGCATAAGCGTGCGTTTGATACTTTTCATTCTCGACATTT-CCAATATATATCGCTTTTTCGATTCAGCTGTTAGTGCATTCCAAGTTAAATAAAGCAAACTGGATTTTGATCACGATTTGCCTACGCTGGTAGTGATGATG-TACATAATAGCATGTTTTTTTACGATGAAATATCGTCAGGACCCACATGCGCACAAAGATGAGGTTGCTAGATCTAC---TTAACACTTGAGTTGTTTTCTTTTCATGATTACCTGTGAACCGAAAAATGTTCAACTTGTGGTTATGTAATGTCCCACTTCAGGTAGCGTTGGTTTCGTCTTCCAATTAGAAATAATGTCAGTGGTT]
[+] EMBL AK108624 [CATTTCTTCGAGCAGGTGAGGCGCACGCGCACTTCGCCGCTCCGCTGCACCCCCACGATGGCCTCCTCCCTCGCCGCGCGCCGCCTCCTCTCCCGCTCCGCCGCCGCCGCGTCCCGCCGCCTCGTCCCCTGCGCCTCGTCCGCGACCCCGCGCGCTGCCCCCGCTGCTCTGCGCCGCTTCTTCTCTGCGGAAGCCTCGACGCCGCCACCGACGCCGCCGACGCCACCACTCCCGCCGCCGCCTCTGGAGCCCACCGTCGAGCCGCCCAAGTCGGAGGGCGCCTCCTCCTCTTCCGCCTCGTCTTCCGCCGGCGCCGGAGGAGCCCATCGGTCGGCGCCGGGGGCCTCGGCGGGGGCTCGCCGCGCCGGCGGCACGGGCTACGAGGAGGAGCAGGAGAAAGTGCTCCGCGCGTCGCTGCTCCACGTGCCAAGGATGGGGTGGAGCGAGTCAGCCATGATCGCCGGGGCGAGGGACGTGGGCGTGTCGCCGGCCATCGTCGGTGCTTTCCCGAGGAAGGAGGCTGCGCTCGTTGAGTTTTTCATGGATGACTGCCTTCAACAACTCATTGATCGCATTGATGCTGGAGAGGGAGAGCTGTTGAAGAACTTGGTACTGAGTGAGAGACTTTCCAAACTTGTCCGAATGAGGCTGGAAATGCAGGGACCTTATATATCAAAGTGGCCTCAAGCTCTCAGTATCCAATCCCAACCAGCAAACATTTCAACAAGTTTAAAGCAGAGAGCTGTCCTTGTTGATGAGATTTGGCATGCTGCTGGAGATGCTGGATCAGATATTGATTGGTATGTGAA GCGTACTGTGCTTGGTGGTATCTACTCTACCTCAGAGGTGTATATGTTAACTGACAATTCTCCAGATTTCCGCGATACATGGACATTTGTGAGCCGCCGTATCAAGGATGCTCTTGATCTTCAGAAAACTTTTCAGGAGGCCGCGTATCTAGCAGAAGCCGTCGGTGCAGGCA TGGGGGGCTCCCTACAGGGTGTCCTGAACAGACTTTTCAAGAAATGAAGTGCATAAGCGTGCGTTTGATACTTTTCATTCTCGACATTT CCAATATATATCGCTTTTTCGATTCAGCTGTTAGTGCATTCCAAGTTAAATAAAGCAAACTGGATTTTGATCACGATTTGCCTACGCTGGTAGTGATGATG TACATAATAGCATGTTTTTTTACGATGAAATATCGTCAGGACCCACATGCGCACAAAGATGAGGTTGCTAGATCTAC TTAACACTTGAGTTGTTTTCTTTTCATGATTACCTGTGAACCGAAAAATGTTCAACTTGTGGTTATGTAATGTCCCACTTCAGGTAGCGTTGGTTTCGTCTTCCAATTAGAAATAATGTCAGTGGTT]
[+] EMBL BQ906814 [ gaGCTGCGCTCGTTGAGTTTTTCATGGATGACTGCCTTCAACAACTCATTGATCGCATTGATGCTGGAGAGGGAGAGCTGTTGAAGAACTTGGTACTGAGTGAGAGACTTTCCAAACTTGTCCGAATGAGGCTGGAAATGCAGGGACCTTATATATCAAAGTGGCCTCAAGCTCTCAGTATCCAATCCCAACCAGCAAACATTTCAACAAGTTTAAAGCAGAGAGCTGTCCTTGTTGATGAGATTTGGCATGCTGCTGGAGATGCTGGATCAGATATTGATTGGTATGTGAA GCGTACTGTGCTTGGTGGTATCTACTCTACCTCAGAGGTGTATATGTTAACTGACAATTCTCCAGATTTCCGCGATACATGGACATTTGTGAGCC CCGTATCAAGGATGCTCTTGATCTTCAGAAAACTTTTCAGGAGGCCGCGTATCTAGCAGAAGCCGTCGGTGCAGGCA TGGGGGGCTCCCTACAGGGTGTCCTGAACAGACTTTTCAAGAAATGAAGTGCATAAGCGTGCGTTTGATGCTTTTCATTCTCGACATTT CCAATATATATCGCTTTTTCGATTCAGCTGTTAGTGCATTCCAAGTTAAATAAAGC AACTGGATTTTGATCAaaaaaa ]
[-] EMBL CF305039 [ TCCCAACCAGCAAACATTTCAACAAGTTTAAAGCAGAGAGCTGTCCTTGTTGATGAGATTTGGCATGCTGCTGGAGATGCTGGATCAGATATTGATTGGTATGTGAA GCGTACTGTGCTTGGTGGTATCTACTCTACCTCAGAGGTGTATATGTTAACTGACAATTCTCCAGATTTCCGCGATACATGGACATTTGTGAGCCGCCGTATCAAGGATGCTCTTGATCTTCAGAAAACTTTTCAGGAGGCCGCGTATCTAGCAGAAGCCGTCGGTGCAGGCA TGGGGGGCTCCCTACAGGGTGTCCTGAACAGACTTTTCAAGAAATGAAGTGCATAAGCGTGCGTTTGATACTTTTCATTCTCGACATTT CCAATATATATCGCTTTTTCGATTCAGCTGTTAGTGCATTCCAAGTTAAATAAAGCAAACTGGATTTTGATCACGATTTGCCTACGCTGGTAGTGATGATG TACATAATAGCATGTTTTTTTACGATGAAATATCGTCAGGACCCACATGCGCACAAAGATGAGGTTGCTAGATCTAC TTAACACTTGAGTTGTTTTCTTTTCATGATTACCTGTGAACCGAAAAATGTTCAACTTGTGGTTATGTAATGTCCCACTTCAGGTAGCGTTGGTTTCGTCTTC ]
[+] EMBL AU222548 [ ACAAGTTTAAAGCAGAGAGCTGTCCTTGTTGATGAGATTTGGCATGCTGCTGGAGATGCTGGATCAGATATTGATTGGTATGTGAA GCGTACTGTGCTTGGTGGTATCTACTCTACCTCAGAGGTGTATATGTTAACTGACAATTNTCCAGATTTCCGCGATACATGGACATTTGTGAGCCGCCGTATCAAGGATGCTCTTGATCTTCAGAAAACTTTTCAGGAGGCCGCGTATCTAGCAGAAGCCGTCGGTGCAGGCA TGGGGGGCTCCCTACAGGGTGTCCTGAACAGACTTTTCAAGAAATGAAGTGCATAAGCGTGCGTTTGATACTTTTCATTCTCGACATTT CCAATATATATCGCTTTTTCGATTCAGCTGTTAGTGCATTCCAAGTTAAATAAAGCAAACTGGATTTTGATCAaaaaa ]
[+] EMBL BI802837 [ GGTAT TGAACGC TACTGT CTTGGTGGTATCTACTCTACCTCAGAGGTGTATATGTTAACTGACAATTCTCCAGATTTCCGCGATACATGGACATTTGTGA CC CCGTATCAAGGATGCTCTTGATCTTCAGAAAACTTTTCAGGAGGCCGCGTATCTAGCAGAAGCCGTCGGTGCAGGCACTGGGGGGCTCCCTACAGGGTGTCCTGAACAGACTTTTCAAGAAATGAAGTGCATAAGCGTGCGTTTGATACTTTTCATTCTCGACATTTCCCAATATATATCGCTTTTTCGATTCAGCTGTTAGTGCATTCCCAGTTAAATAAAGCCAACTGGATTTTGATCACGATTTGCCTACGCTGGTAGTGATGATGCTACATAGTAGCATGTTTTTTTACGATGAAATATCGTCAGGACCCACATGCGCACCAAGATGAGGTTGCTAGATCTACTTATTAACACTTGAGTTGTTTTCTTTTCATGATTACCTGTGAACCGAAAAATGTTCAACTTGTGGTTATGTAATGTCCCACTTCAGGTAGCGTTGGTTTCGTCTTCCCATTAGAAAAAAaaaa ]
consensusID : consensus_9669#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence
[ACTTCGCCGCTCCGCTGCACCCCCACGATGGCCTCCTCCCTCTCCGCGCGCCGNCTCCTCTCCCGCTCCGTCGCCGTCGNGTCCCGTNGACTCGTCCCCTGCGCCTCGTCCGCGACCNCGCGCGNTGNCCCCGCTGCTCTGCGCCGCTTCTTCTCTGCGGAAGCTCGACGCCGTCACCGACGCCGCTGCGCACCACTCCCGCGCGCTCTGGAGCCACCGCGAGCGCCAAGCGAGGCGCTCCTCTCTTCGCTCGCTTCGCGNGCGAGAGCCATCGTCGCGCGTGGGCTCGCGTG]
[+] EMBL C28431 [ACTTCGCCGCTCCGCTGCACCCCCACGATGGCCTCCTCCCTCTCCGCGCGCCGNCTCCTCTCCCGCTCCGTCGCCGTCGNGTCCCGTNGACTCGTCCCCTGCGCCTCGTCCGCGACCNCGCGCGNTGNCCCCGCTGCTCTGCGCCGCTTCTTCTCTGCGGAAGCTCGACGCCGTCACCGACGCCGCTGCGCACCACTCCCGCGCGCTCTGGAGCCACCGCGAGCGCCAAGCGAGGCGCTCCTCTCTTCGCTCGCTTCGCGNGCGAGAGCCATCGTCGCGCGTGGGCTCGCGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9669#0 CATTTCTTCGAGCAGGTGAGGCGCACGCGCACTTCGCCGCTCCGCTGCACCCCCACGATG 60
consensus_9669#1 ------------------------------ACTTCGCCGCTCCGCTGCACCCCCACGATG 30
******************************
consensus_9669#0 GCCTCCTCCCTCGCCGCGCGCCGCCTCCTCTCCCGCTCCGCCGCCGCCGCGTCCCGCCGC 120
consensus_9669#1 GCCTCCTCCCTCTCCGCGCGCCGNCTCCTCTCCCGCTCCGTCGCCGTCGNGTCCCGTNGA 90
************ ********** **************** ***** ** ****** *
consensus_9669#0 CTCGTCCCCTGCGCCTCGTCCGCGACCCCGCGCGCTGCCCCCGCTGCTCTGCGCCGCTTC 180
consensus_9669#1 CTCGTCCCCTGCGCCTCGTCCGCGACCNCGCGCGNTGNCCCCGCTGCTCTGCGCCGCTTC 150
*************************** ****** ** **********************
consensus_9669#0 TTCTCTGCGGAAGCCTCGACGCCGCCACCGACGCCGCCGACGCCACCACTCCCGCCGCCG 240
consensus_9669#1 TTCTCTGCGGAAGC-TCGACGCCGTCACCGACGCCGCTG-CGC-ACCACTCCCGCG--CG 205
************** ********* ************ * *** *********** **
consensus_9669#0 CCTCTGGAGCCCACCGTCGAGCCGCCCAAGTCGGAGGGCGCCTCCTCCTCTTCCGCCTCG 300
consensus_9669#1 C-TCTGGAGCC-ACCG-CGAGCG--CCAAG-CGAGGCGCTCCTC-TCTTCGCTCGCTTCG 258
* ********* **** ***** ***** ** * ** **** ** ** *** ***
consensus_9669#0 TCTTCCGCCGGCGCCGGAGGAGCCCATCGGTCGGCGCCGGGGGCCTCGGCGGGGGCTCGC 360
consensus_9669#1 CGN---GCGAGAGCCATCGTCGCGCGTGGGCTCGCGTG---------------------- 293
** * *** * ** * * ** ***
consensus_9669#0 CGCGCCGGCGGCACGGGCTACGAGGAGGAGCAGGAGAAAGTGCTCCGCGCGTCGCTGCTC 420
consensus_9669#1 ------------------------------------------------------------
consensus_9669#0 CACGTGCCAAGGATGGGGTGGAGCGAGTCAGCCATGATCGCCGGGGCGAGGGACGTGGGC 480
consensus_9669#1 ------------------------------------------------------------
consensus_9669#0 GTGTCGCCGGCCATCGTCGGTGCTTTCCCGAGGAAGGAGGCTGCGCTCGTTGAGTTTTTC 540
consensus_9669#1 ------------------------------------------------------------
consensus_9669#0 ATGGATGACTGCCTTCAACAACTCATTGATCGCATTGATGCTGGAGAGGGAGAGCTGTTG 600
consensus_9669#1 ------------------------------------------------------------
consensus_9669#0 AAGAACTTGGTACTGAGTGAGAGACTTTCCAAACTTGTCCGAATGAGGCTGGAAATGCAG 660
consensus_9669#1 ------------------------------------------------------------
consensus_9669#0 GGACCTTATATATCAAAGTGGCCTCAAGCTCTCAGTATCCAATCCCAACCAGCAAACATT 720
consensus_9669#1 ------------------------------------------------------------
consensus_9669#0 TCAACAAGTTTAAAGCAGAGAGCTGTCCTTGTTGATGAGATTTGGCATGCTGCTGGAGAT 780
consensus_9669#1 ------------------------------------------------------------
consensus_9669#0 GCTGGATCAGATATTGATTGGTATGTGAAGCGTACTGTGCTTGGTGGTATCTACTCTACC 840
consensus_9669#1 ------------------------------------------------------------
consensus_9669#0 TCAGAGGTGTATATGTTAACTGACAATTCTCCAGATTTCCGCGATACATGGACATTTGTG 900
consensus_9669#1 ------------------------------------------------------------
consensus_9669#0 AGCCGCCGTATCAAGGATGCTCTTGATCTTCAGAAAACTTTTCAGGAGGCCGCGTATCTA 960
consensus_9669#1 ------------------------------------------------------------
consensus_9669#0 GCAGAAGCCGTCGGTGCAGGCATGGGGGGCTCCCTACAGGGTGTCCTGAACAGACTTTTC 1020
consensus_9669#1 ------------------------------------------------------------
consensus_9669#0 AAGAAATGAAGTGCATAAGCGTGCGTTTGATACTTTTCATTCTCGACATTTCCAATATAT 1080
consensus_9669#1 ------------------------------------------------------------
consensus_9669#0 ATCGCTTTTTCGATTCAGCTGTTAGTGCATTCCAAGTTAAATAAAGCAAACTGGATTTTG 1140
consensus_9669#1 ------------------------------------------------------------
consensus_9669#0 ATCACGATTTGCCTACGCTGGTAGTGATGATGTACATAATAGCATGTTTTTTTACGATGA 1200
consensus_9669#1 ------------------------------------------------------------
consensus_9669#0 AATATCGTCAGGACCCACATGCGCACAAAGATGAGGTTGCTAGATCTACTTAACACTTGA 1260
consensus_9669#1 ------------------------------------------------------------
consensus_9669#0 GTTGTTTTCTTTTCATGATTACCTGTGAACCGAAAAATGTTCAACTTGTGGTTATGTAAT 1320
consensus_9669#1 ------------------------------------------------------------
consensus_9669#0 GTCCCACTTCAGGTAGCGTTGGTTTCGTCTTCCAATTAGAAATAATGTCAGTGGTT 1376
consensus_9669#1 --------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||