These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9672#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1008 fasta sequence [GCATCAGCTATTATTTTCTGCATCAATGATGAGGTTGAAGGCTTCCAAGGCAATGGTTGGTGGCTAGGGGTGATTACTGATGTTCATCCTGAATTTAGATATACATTTAAGGCAGCACACTCAGGAAAGGAGATTCAATTGGACCAAAAGGCACTTAGACTTCGGTATGACTGGACCCATGATCAGTGGCAACAAGTTACACAGAATGTGACAAAAAAATTTGCCAAAGGCAGCAAGGTCGAAGTCACCAGTAATGATGATGGTTTTCATGGAGCTTGGTTCCAGGGGACTGCTCTAAAATATGTTAACAACAAGATTTTAGTGGAATATGACGCATTGAAGGCTGATGATGAAATCACTCCTTTGACAGAAGCCATAGAAGTGCAGCACGTCAGACCCTGTCCTCCAGATATCCCTGTAACCAGTGGATTCAATTTACTTGATGAAGTTGATGCTTGTTGGAATGATGGATGGTGGGTTGGTGTGATATCCAAGGTTAACAGTGGTGACAGGTACATGGTATACTTCAGGTCTTCTACAGAAGAGACTGAGTTCGGGCATGAACAGTTAAGACTTCACTGCGATTGGGTGGGTGGAAGGTGGATGCGGGCTTCGCTGGGATTGGAGGCATAAGGCTTACGAGGTGCACGCACAATTTTGTGCAGAAGTGTGGGTTAGTACCCAAAAGAATGTGCTTCGCTAACATCATCCTTGTTATTGAAGTTGTCTGATAGTACATAGAAAGTTGTCTGAATGACCTTTCTTCGTCTGCAACTCCACCAGCAGTTGATCTGAATGTTTGTCAATGGGAGATCCTCAGCGTCACTAATAAGCTTTGGCATTTTCTGTAGATCTGAACATGCTTCTATAATAACTGACTTTGGGGAACAGAAATTCTAATTTAGGGTGACATAACTCTTATTTCATGACTACATGAGCATATGCTTTCTATGTTTGAGATATGTTTTTAGTTCTGCATTCAAAAGTAGTGGGATTGAATTGAGAGTA] [+] EMBL AK058597 [GCATCAGCTATTATTTTCTGCATCAATGATGAGGTTGAAGGCTTCCAAGGCAATGGTTGGTGGCTAGGGGTGATTACTGATGTTCATCCTGAATTTAGATATACATTTAAGGCAGCACACTCAGGAAAGGAGATTCAATTGGACCAAAAGGCACTTAGACTTCGGTATGACTGGACCCATGATCAGTGGCAACAAGTTACACAGAATGTGACAAAAAAATTTGCCAAAGGCAGCAAGGTCGAAGTCACCAGTAATGATGATGGTTTTCATGGAGCTTGGTTCCAGGGGACTGCTCTAAAATATGTTAACAACAAGATTTTAGTGGAATATGACGCATTGAAGGCTGATGATGAAATCACTCCTTTGACAGAAGCCATAGAAGTGCAGCACGTCAGACCCTGTCCTCCAGATATCCCTGTAACCAGTGGATTCAATTTACTTGATGAAGTTGATGCTTGTTGGAATGATGGATGGTGGGTTGGTGTGATATCCAAGGTTAACAGTGGTGACAGGTACATGGTATACTTCAGGTCTTCTACAGAAGAGACTGAGTTCGGGCATGAACAGTTAAGGCTTCACTGCGATTGGGTGGGTGGAAGGTGGATGCGGGCTTCGCTGGGATTGGAGGCATAAGGCTTACGAGGTGCACGCACAATTTTGTGCAGAAGTGTGGGTTAGTACCCAAAAGAATGTGCTTCGCTAACATCATCCTTGTTATTGAAGTTGTCTGATAGTACATAGAAAGTTGTCTGAATGACCTTTCTTCGTCTGCAACTCCACCAGCAGTTGATCTGAATGTTTGTCAATGGGAGATCCTCAGCGTCACTAATAAGCTTTGGCATTTTCTGTAGATCTGAACATGCTTCTATAATAACTGACTTTGGGGAACAGAAATTCTAATTTAGGGTGACATAACTCTTATTTCATGACTACATGAGCATATGCTTTCTATGTTTGAGATATGTTTTTAGTTCTGCATTCAAAAGTAGTGGGATTGAATTGAGAGTA] [-] EMBL CB964798 [ CAGTGGTGACAGGTACATGGTATACTTCAGGTCTTCTACAGAAGAGACTGAGTTCGGGCATGAACAGTTAAGACTTCACTGCGATTGGGTGGGTGGAAGGTGGATGCGGGCTTCGCTGGGATTGGAGGCATAAGGCTTACGAGGTGCACGCACAATTTTGTGCAGAAGTGTGGGTTAGTACCCCAAAGAATGTGCTTCGCTAACATCATCCTTGTTATTGAAGTTGTCTGATAGTACATAGAAAGTTGTCTGAATGACCTTTCTTCGTCTGCAACTCCACCAGCAGTTGATCTGAATGTTTGTCAATGGGAGATCCTCAGCGTCACTAATAAGCTTTGGCATTTTCTGTAGATCTGAACATGCTTCTATAATAACTGACTTTGGGGAACAGAAATTCTAATTTAGGGTGA ] [-] EMBL CB966253 [ CAGTGGTGACAGGTACATGGTATACTTCAGGTCTTCTACAGAAGAGACTGAGTTCGGGCATGAACAGTTAAGACTTCACTGCGATTGGGTGGGTGGAAGGTGGATGCGGGCTTCGCTGGGATTGGAGGCATAAGGCTTACGAGGTGCACGCACAATTTTGTGCAGAAGTGTGGGTTAGTACCCAAAAGAATGTGCTTCGCTAACATCATCCTTGTTATTGAAGTTGTCTGATAGTACATAGAAAGTTGTCTGAATGACCTTTCTTCGTCTGCAACTCCACCAGCAGTTGATCTGAATGTTTGTCAATGGGAGATCCTCAGCGTCACTAATAAGCTTTGGCATTTTCTGTAGATCTGAACATGCTTCTATAATAACTGACTTTGGGGAACAGAAATTCTAATTTAGGGTGA ] consensusID : consensus_9672#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 535 fasta sequence [AGACCCTGTCGCTCCGAGATATCCCCTGTAACCACGTGGATTCAATTTACTTGATGAAGTTGATGCTTGTTGGAATGATGGATGTGGTTGGTGTGATATCCCAGGTTAACACGTGGTGACAGGTACACTGGTATACTTCAGGTCTTCTACAGAAGAGACTGAGTTCGGGCATGAACACGTTAAGACTTCACCTGCGATTGGGTGGTGGAAGGTGGATCGGGCTTCGCTGGGATTGGAGGCATAAGGCTTACGAGGTGCACGCACCATTTTGTGCAGAAGTGTGGGTTAGTACCCCAAAGAATGTGCTTCGCTAACATCATCCTTGTTATTGAAGTTGTCTGATAGTACATAGAAAGTTGTCTGAATGACCTTTCTTCGTCTGCAACTCCACCCACGCAGTTGATCTGAATGTTTGTCAATGGGAGATCCTCAGCGTCACTAATAAGCTTTGGCATTTTCTGTAGATCTGAACATGCTTCTATAATAACTGACTTTGGGGAACAGAAATTCTAATTTAGGGTGACCAAAAAAAAAA] [+] EMBL BI801196 [AGACCCTGTCGCTCCGAGATATCCCCTGTAACCACGTGGATTCAATTTACTTGATGAAGTTGATGCTTGTTGGAATGATGGATGTGGTTGGTGTGATATCCCAGGTTAACACGTGGTGACAGGTACACTGGTATACTTCAGGTCTTCTACAGAAGAGACTGAGTTCGGGCATGAACACGTTAAGACTTCACCTGCGATTGGGTGGTGGAAGGTGGATCGGGCTTCGCTGGGATTGGAGGCATAAGGCTTACGAGGTGCACGCACCATTTTGTGCAGAAGTGTGGGTTAGTACCCCAAAGAATGTGCTTCGCTAACATCATCCTTGTTATTGAAGTTGTCTGATAGTACATAGAAAGTTGTCTGAATGACCTTTCTTCGTCTGCAACTCCACCCACGCAGTTGATCTGAATGTTTGTCAATGGGAGATCCTCAGCGTCACTAATAAGCTTTGGCATTTTCTGTAGATCTGAACATGCTTCTATAATAACTGACTTTGGGGAACAGAAATTCTAATTTAGGGTGACCAAAAAAAAAA] consensusID : consensus_9672#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 414 fasta sequence [GTCTTCTACAGAAGAGACTGAGTTCGGGCATGAACAGTTAAGGCGTTCACTGCGATTGGGTGGGTGGAAGGTGGATGCGGGCTTCGCTGGGATTGGAGGCATAAGGCTTACGAGGTGCACGCACAATTTTGTGCAGAAGTGTGGGTTAGTACCCCAAAGAATGTGCTTTGCTAACATCATCCTTGTTATTGAAGTTGTCTGATAGTACATAGAAAGTTGTCTGAATGACCTTTCTTCGTCTGCAACTCCACCAGCAGTTGATCTGAATGTTTGTCAATGGGAGATCCTCAGCGTCACTAATAAGCTTTGGCATTTTCTGTAGATCTGAACATGCTTCTATAATAACTGACTTTGGGGAACAGAAATTCTAATTTAGGGTGACATAACTCTTATTTCANGACTAAAAAAAAAAAA] [+] EMBL BQ906508 [GTCTTCTACAGAAGAGACTGAGTTCGGGCATGAACAGTTAAGGCGTTCACTGCGATTGGGTGGGTGGAAGGTGGATGCGGGCTTCGCTGGGATTGGAGGCATAAGGCTTACGAGGTGCACGCACAATTTTGTGCAGAAGTGTGGGTTAGTACCCCAAAGAATGTGCTTTGCTAACATCATCCTTGTTATTGAAGTTGTCTGATAGTACATAGAAAGTTGTCTGAATGACCTTTCTTCGTCTGCAACTCCACCAGCAGTTGATCTGAATGTTTGTCAATGGGAGATCCTCAGCGTCACTAATAAGCTTTGGCATTTTCTGTAGATCTGAACATGCTTCTATAATAACTGACTTTGGGGAACAGAAATTCTAATTTAGGGTGACATAACTCTTATTTCANGACTAAAAAAAAAAAA] [-] EMBL AU225105 [ ccgcTCATCCTTGTTATTGAAGTTGTCTGATAGTACATAGAAAGTTGTCTGAATGACCTTTCTTCGTCTGCAACTCCACCAGCAGTTGATCTGAATGTTTGTCAATGGGAGATCCTCAGCGTCACTAATAAGCTTTGGCATTTTCTGTAGATCTGAACAgcggc ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9672#0 GCATCAGCTATTATTTTCTGCATCAATGATGAGGTTGAAGGCTTCCAAGGCAATGGTTGG 60 consensus_9672#2 ------------------------------------------------------------ consensus_9672#1 ------------------------------------------------------------ consensus_9672#0 TGGCTAGGGGTGATTACTGATGTTCATCCTGAATTTAGATATACATTTAAGGCAGCACAC 120 consensus_9672#2 ------------------------------------------------------------ consensus_9672#1 ------------------------------------------------------------ consensus_9672#0 TCAGGAAAGGAGATTCAATTGGACCAAAAGGCACTTAGACTTCGGTATGACTGGACCCAT 180 consensus_9672#2 ------------------------------------------------------------ consensus_9672#1 ------------------------------------------------------------ consensus_9672#0 GATCAGTGGCAACAAGTTACACAGAATGTGACAAAAAAATTTGCCAAAGGCAGCAAGGTC 240 consensus_9672#2 ------------------------------------------------------------ consensus_9672#1 ------------------------------------------------------------ consensus_9672#0 GAAGTCACCAGTAATGATGATGGTTTTCATGGAGCTTGGTTCCAGGGGACTGCTCTAAAA 300 consensus_9672#2 ------------------------------------------------------------ consensus_9672#1 ------------------------------------------------------------ consensus_9672#0 TATGTTAACAACAAGATTTTAGTGGAATATGACGCATTGAAGGCTGATGATGAAATCACT 360 consensus_9672#2 ------------------------------------------------------------ consensus_9672#1 ------------------------------------------------------------ consensus_9672#0 CCTTTGACAGAAGCCATAGAAGTGCAGCACGTCAGACCCTGTCCTCCAGATATCCCTGTA 420 consensus_9672#2 ------------------------------------------------------------ consensus_9672#1 -----------------------------AGACCCTGTCGCTCCGAGATATCCCCTGTAA 31 consensus_9672#0 ACCAGTGGATTCAATTTACTTGATGAAGTTGATGCTTGTTGGAATGATGGATGGTGGGTT 480 consensus_9672#2 ------------------------------------------------------------ consensus_9672#1 CCACGTGGATTCAATTTACTTGATGAAGTTGATGCTTGTTGGAATGATGGATGTGGTTGG 91 consensus_9672#0 GGTGTGATATCCAAGGTTAACAGTGGTGACAGGTACATGGTATACTTCAGGTCTTCTACA 540 consensus_9672#2 --------------------------------------------------GTCTTCTACA 10 consensus_9672#1 TGTGATATCCCAGGTTAACACGTGGTGACAGGTACACTGGTATACTTCAGGTCTTCTACA 151 ********** consensus_9672#0 GAAGAGACTGAGTTCGGGCATGAACA-GTTAAGAC-TTCACTGCGATTGGGTGGGTGGAA 598 consensus_9672#2 GAAGAGACTGAGTTCGGGCATGAACA-GTTAAGGCGTTCACTGCGATTGGGTGGGTGGAA 69 consensus_9672#1 GAAGAGACTGAGTTCGGGCATGAACACGTTAAGACTTCACCTGCGATTGGGTGG-TGGAA 210 ************************** ****** * * ************** ***** consensus_9672#0 GGTGGATGCGGGCTTCGCTGGGATTGGAGGCATAAGGCTTACGAGGTGCACGCACAATTT 658 consensus_9672#2 GGTGGATGCGGGCTTCGCTGGGATTGGAGGCATAAGGCTTACGAGGTGCACGCACAATTT 129 consensus_9672#1 GGTGGAT-CGGGCTTCGCTGGGATTGGAGGCATAAGGCTTACGAGGTGCACGCACCATTT 269 ******* *********************************************** **** consensus_9672#0 TGTGCAGAAGTGTGGGTTAGTACCCAAAAGAATGTGCTTCGCTAACATCATCCTTGTTAT 718 consensus_9672#2 TGTGCAGAAGTGTGGGTTAGTACCCCAAAGAATGTGCTTTGCTAACATCATCCTTGTTAT 189 consensus_9672#1 TGTGCAGAAGTGTGGGTTAGTACCCCAAAGAATGTGCTTCGCTAACATCATCCTTGTTAT 329 ************************* ************* ******************** consensus_9672#0 TGAAGTTGTCTGATAGTACATAGAAAGTTGTCTGAATGACCTTTCTTCGTCTGCAACTCC 778 consensus_9672#2 TGAAGTTGTCTGATAGTACATAGAAAGTTGTCTGAATGACCTTTCTTCGTCTGCAACTCC 249 consensus_9672#1 TGAAGTTGTCTGATAGTACATAGAAAGTTGTCTGAATGACCTTTCTTCGTCTGCAACTCC 389 ************************************************************ consensus_9672#0 ACCA--GCAGTTGATCTGAATGTTTGTCAATGGGAGATCCTCAGCGTCACTAATAAGCTT 836 consensus_9672#2 ACCA--GCAGTTGATCTGAATGTTTGTCAATGGGAGATCCTCAGCGTCACTAATAAGCTT 307 consensus_9672#1 ACCCACGCAGTTGATCTGAATGTTTGTCAATGGGAGATCCTCAGCGTCACTAATAAGCTT 449 *** ****************************************************** consensus_9672#0 TGGCATTTTCTGTAGATCTGAACATGCTTCTATAATAACTGACTTTGGGGAACAGAAATT 896 consensus_9672#2 TGGCATTTTCTGTAGATCTGAACATGCTTCTATAATAACTGACTTTGGGGAACAGAAATT 367 consensus_9672#1 TGGCATTTTCTGTAGATCTGAACATGCTTCTATAATAACTGACTTTGGGGAACAGAAATT 509 ************************************************************ consensus_9672#0 CTAATTTAGGGTGACATAACTCTTATTTCATGACTACATGAGCATATGCTTTCTATGTTT 956 consensus_9672#2 CTAATTTAGGGTGACATAACTCTTATTTCANGACTAAAAAAAAAAAA------------- 414 consensus_9672#1 CTAATTTAGGGTGACCAAAAAAAAAA---------------------------------- 535 *************** ** * consensus_9672#0 GAGATATGTTTTTAGTTCTGCATTCAAAAGTAGTGGGATTGAATTGAGAGTA 1008 consensus_9672#2 ---------------------------------------------------- consensus_9672#1 ---------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||