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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9675#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1020 fasta sequence
[AATTCGTTGCGCAAATTGATTGAGATCAATGGAAGGAAGTGTGAGGATTCCAACAATTTGCTTGGGATGATGTTATCCGCTAGTAAAATTGACAGTGAATTCAAAATGGGAATTGAAGAAATAATTGATGAATGCAAGACTTTTTACTTTGCGGGGAAAGAAACAACAGCTACCTTGTTGACATGGGCAACTCTTCTTCTAGCTTTACATCAAGAATGGCAAAACAAGGCTCGCGATGAAGTCCTTCAAGTGTGCGGCAAGTATGAGCACCCAAAAGCAGAAAACCTGAGTGAACTTAAAATTGTAAATATGGTGTTAAAAGAAACCCTGAGGTTGTATCCTCCGGCCGTGTTTCTCAATAAGATAGCCAACCGGGATGTCAAACTGGGCAAACTTGACATTCCGGCTGGCACGCAGCTCCAGTTGCCTATTCTTGACATTCATCATGATGTTAGCATATGGGGTGCCGATGCAGATGAGTTTGATCCATCAAGGTTTGCAGAGGGCAAGAGCTATCACCTTGGCGCATACTTCCCCTTCGGGATTGGCCCTACCATCTGTGTCGGCCAGAATCTTGCAATGGTTGAAGCAAAGGTGGCCCTTGCAATGATCCTTCCGCGCTTCGCGCTTGTTGTCTCACCATCTTATGTTCATGCACCAATGCTTGTAGTCACACTCCAACCCCAGTATGGTGCTCAAGTTCTTGTCCATAAGATTTGAGACTTCGATGGACCTGTGTGTGGATTTCTGGGTTTTTGCAGTAAGTATGGTGAACGATTTGGAAGGATGTTTCCAGCTCGTCTGAACTTTCTATCAGAAGTGGAATCTGCTGGAGCCATGGGAGCATATAAAGAGTACAAACAACACTTAGTACCTGCAGAAATGTACAGAAAATAAAATGGTTTGCAACTCTTCATGTTTTTGCCATGTACAAATAGGTCTTACTTGCTGAAATGTAGTAATACACAAAATAAAATGGTTCGGAATTGGTTAGTAAAAAAAAAAAAAAAAAAAAAACAC]
[+] EMBL CB000849 [AATTCGTTGCGCAAATTGATTGAGATCAATGGAAGGAAGTGTGAGGATTCCAACAATTTGCTTGGGATGATGTTATCCGCTAGTAAAATTGACAGTGAATTCAAAATGGGAATTGAAGAAATAATTGATGAATGCAAGACTTTTTACTTTGCGGGGAAAGAAACAACAGCTACCTTGTTGACATGGGCAACTCTTCTTCTAGCTTTACATCAAGAATGGCAAAACAAGGCTCGCGATGAAGTCCTTCAAGTGTGCGGCAAGTATGAGCACCCAAAAGCAGAAAACCTGAGTGAACTTAAAATTGTAAATATGGTGTTAAAAGAAACCCTGAGGTTGTATCCTCCGGCCGTGTTTCTCAATAAGATAGCCAACCGGGATGTCAAACTGGGCAAACTTGACATTCCGGCTGGCACGCAGCTCCAGTTGCCTATTCTTGACATTCATCATGATGTTAGCATATGGGGTGCCGATGCAGATGAG ]
[+] EMBL CF321958 [ GATCAATGGAAGGAAGTGTGAGGATTCCAACAATTTGCTTGGGATGATGTTATCCGCTAGTAAAATTGACAGTGAATTCAAAATGGGAATTGAAGAAATAATTGATGAATGCAAGACTTTTTACTTTGCGGGGAAAGAAACAACAGCTACCTTGTTGACATGGGCAACTCTTCTTCTAGCTTTACATCAAGAATGGCAAAACAAGGCTCGCGATGAAGTCCTTCAAGTGTGCGGCAAGTATGAGCACCCAAAAGCAGAAAACCTGAGTGAACTTAAAATTGTAAATATGGTGTTAAAAGAAACCCTGAGGTTGTATCCTCCGGCCGTGTTTCTCAATAAGATAGCCAACCGGGATGTCAAACTGGGCAAACTTGACATTCCGGCTGGCACGCAGCTCCAGTTGCCTATTCTTGACATTCATCATGATGTTAGCATATGGGGTGCCGATGCAGATGAGTTTGATCCATCAAGGTTTGCAGAGGGCAAGAGCTATCACCTTGGCGCATACTTCCCCTTCGGGATTGGCCCTACCATCTGTGTCGGCCAGAATCTTGCAATGGTTGAAGCAAAGGTGGCCCTTGCAATGATCCTTCCGCGCTTCGCGCTTGTTGTCTCACCATCTTATGTTCATGCACCAATGCTTGTAGTCACACTCCAACCCCAGTATGGGGCTCAAGT ]
[-] EMBL CF321959 [ GTCAAACTGGGCAAACTTGACATTCCGGCTGGCACGCAGCTCCAGTTGCCTATTCTTGACATTCATCATGATGTTAGCATATGGGGTGCCGATGCAGATGAGTTTGATCCATCAAGGTTTGCAGAGGGCAAGAGCTATCACCTTGGCGCATACTTCCCCTTCGGGATTGGCCCTACCATCTGTGTCGGCCAGAATCTTGCAATGGTTGAAGCAAAGGTGGCCCTTGCAATGATCCTTCCGCGCTTCGCGCTTGTTGTCTCACCATCTTATGTTCATGCACCAATGCTTGTAGTCACACTCCAACCCCAGTATGGTGCTCAAGTTCTTGTCCATAAGATTTGAGACTTCGATGGACCTGTGTGTGGATTTCTGGGTTTTTGCAGTAAGTATGGTGAACGATTTGGAAGGATGTTTCCAGCTCGTCTGAACTTTCTATCAGAAGTGGAATCTGCTGGAGCCATGGGAGCATATAAAGAGTACAAACAACACTTAGTACCTGCAGAAATGTACAGAAAATAAAATGGTTTGCAACTCTTCATGTTTTTGCCATGTACAAATAGGTCTTACTTGCTGAAATGTAGTAATACACAAAATAAAATGGTTCGGAATTGGTTAGTAAAAAAAAAAAAAAAAAAAAAACAC]
[-] EMBL BI305681 [ GCGCATACTTCCCCTTCGGGATTGGCCCTACCATCTGTGTCGGCCAGAATCTTGCAATGGTTGAAGCAAAGGTGGCCCTTGCAATGATCCTTCAGCGCTTCGCGCTTGTTGTCTCACCGTCTTATGTTCATGCACCAATGCTTGTAGTCACACTCCAACCCCAGTATGGTGCTCAAGTTCTTGTCCATAAGATTTGAGACTTCGATGGACCTGTGTGTGGATTTCTGGGTTTTTGCAGTAAGTATGGTGAACGATTTGGAAGGATGTTTCCAGCTCGTCTGAACTTTCTATCAGAAGTGGAATCTGCTGGAGCCATGGGAGCATTTTCCGTGTACAAACAACACTTAGTACCTGCAGAAATGTACAGAAAATAAAATGGTTTGCAACTCTTCATGTTTTTGCCATGTACAAATAGGTCTTACTTGCTGAAATGTAGTAATACACAAAATAAAATGGTTCGGga ]
consensusID : consensus_9675#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence
[GAATTCCCGGTCGACCCACGCGTCCGGCAAACATGACATTCCGGCTGCACGCAGCTCCAGTTGCCTATTCTTGACATTCATCATGATGTTTAGCATATGGGTGGCCGATCAGATGAGTTTGATCCACTCAAGGTTTGCAGAGGGGCAAGAGCTATCACCTTGGCGCATACTTCCCCTTCGGGATTGGCCCTACCATCTGTGTCGGCCAGAATCTTGCAATGGTTGAAGCCAAGGTGGCCCTTGCAATGATCCTTCAGCGCTTCGCGCTTGTTGTCTCACCGTCTTATGTTCATGCACCAATGCTTGTAGTCACACTCCAACCCCACGTATGGTGCTCAAGTTCTTGTCCATAAGATTTGAGACTTCGATGGACCTGTGTGTGGATTTCTGGGTTTTTCAGTAAGTATGGTGAACGATTTGGAAGGATGTTTCCAGCTCGTCTGAACTTTCTATCAGAAGTGGAATCTGCTGGAGCCATGGGAGCATTTTCCGTGTACAAACAACACTTAGTACCTGCAGAAATGTACAGCAAAATAAAATGGTTTGCACTCTTCATGTTTTTGCCATGTACAATAGGTCTTACTTGCCTGAAATGTAGTAATACACAAATAAAATGGTTCGGAAAAAAA]
[+] EMBL BI813361 [GAATTCCCGGTCGACCCACGCGTCCGGCAAACATGACATTCCGGCTGCACGCAGCTCCAGTTGCCTATTCTTGACATTCATCATGATGTTTAGCATATGGGTGGCCGATCAGATGAGTTTGATCCACTCAAGGTTTGCAGAGGGGCAAGAGCTATCACCTTGGCGCATACTTCCCCTTCGGGATTGGCCCTACCATCTGTGTCGGCCAGAATCTTGCAATGGTTGAAGCCAAGGTGGCCCTTGCAATGATCCTTCAGCGCTTCGCGCTTGTTGTCTCACCGTCTTATGTTCATGCACCAATGCTTGTAGTCACACTCCAACCCCACGTATGGTGCTCAAGTTCTTGTCCATAAGATTTGAGACTTCGATGGACCTGTGTGTGGATTTCTGGGTTTTTCAGTAAGTATGGTGAACGATTTGGAAGGATGTTTCCAGCTCGTCTGAACTTTCTATCAGAAGTGGAATCTGCTGGAGCCATGGGAGCATTTTCCGTGTACAAACAACACTTAGTACCTGCAGAAATGTACAGCAAAATAAAATGGTTTGCACTCTTCATGTTTTTGCCATGTACAATAGGTCTTACTTGCCTGAAATGTAGTAATACACAAATAAAATGGTTCGGAAAAAAA]
consensusID : consensus_9675#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 393 fasta sequence
[TGTCGGCCAGAATCTTACGATGGTTGAAGAAAAGGTGGCCCTTGCAATGATCCTTCAGCGTTTCGCGCTTGTTGTCTCGCGTCCTATGTTCATGCGCCGATGCATGGAGTCACACTCCAACCCCAGTACGGTGCTCAAGTTCTTGCCCATAAGATTTGAGACTTCGATGGATTTGTGTGTGGATTTCTGGGTCTTTGCAGTAAATATGGTGTATGCAGCAGACGTACATCGTGTATTATATATCTTTGTGAACAATTTTGGAAGGATGTTTCCAGCTCGTCTGAACTTTCTATCAAAAGTGGAATTTGCTGGAGCCATGGGAGCATTTTCCATGTACAAACAACTCTTAATACCTGCAGAAATGTACAGAAAATAAAATGGTTTGCGAGCGGC]
[-] EMBL AU225657 [TGTCGGCCAGAATCTTACGATGGTTGAAGAAAAGGTGGCCCTTGCAATGATCCTTCAGCGTTTCGCGCTTGTTGTCTCGCGTCCTATGTTCATGCGCCGATGCATGGAGTCACACTCCAACCCCAGTACGGTGCTCAAGTTCTTGCCCATAAGATTTGAGACTTCGATGGATTTGTGTGTGGATTTCTGGGTCTTTGCAGTAAATATGGTGTATGCAGCAGACGTACATCGTGTATTATATATCTTTGTGAACAATTTTGGAAGGATGTTTCCAGCTCGTCTGAACTTTCTATCAAAAGTGGAATTTGCTGGAGCCATGGGAGCATTTTCCATGTACAAACAACTCTTAATACCTGCAGAAATGTACAGAAAATAAAATGGTTTGCGAGCGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9675#0 AATTCGTTGCGCAAATTGATTGAGATCAATGGAAGGAAGTGTGAGGATTCCAACAATTTG 60
consensus_9675#1 ------------------------------------------------------------
consensus_9675#2 ------------------------------------------------------------
consensus_9675#0 CTTGGGATGATGTTATCCGCTAGTAAAATTGACAGTGAATTCAAAATGGGAATTGAAGAA 120
consensus_9675#1 ------------------------------------------------------------
consensus_9675#2 ------------------------------------------------------------
consensus_9675#0 ATAATTGATGAATGCAAGACTTTTTACTTTGCGGGGAAAGAAACAACAGCTACCTTGTTG 180
consensus_9675#1 ------------------------------------------------------------
consensus_9675#2 ------------------------------------------------------------
consensus_9675#0 ACATGGGCAACTCTTCTTCTAGCTTTACATCAAGAATGGCAAAACAAGGCTCGCGATGAA 240
consensus_9675#1 ------------------------------------------------------------
consensus_9675#2 ------------------------------------------------------------
consensus_9675#0 GTCCTTCAAGTGTGCGGCAAGTATGAGCACCCAAAAGCAGAAAACCTGAGTGAACTTAAA 300
consensus_9675#1 ------------------------------------------------------------
consensus_9675#2 ------------------------------------------------------------
consensus_9675#0 ATTGTAAATATGGTGTTAAAAGAAACCCTGAGGTTGTATCCTCCGGCCGTGTTTCTCAAT 360
consensus_9675#1 ------------------------------------------------------------
consensus_9675#2 ------------------------------------------------------------
consensus_9675#0 AAGATAGCCAACCGGGATGTCAAACTGGGCAAACTTGACATTCCGGCTGGCACGCAGCTC 420
consensus_9675#1 -GAATTCCCGGTCGACCCA-CGCGTCCGGCAAACATGACATTCCGGCTG-CACGCAGCTC 57
consensus_9675#2 ------------------------------------------------------------
consensus_9675#0 CAGTTGCCTATTCTTGACATTCATCATGATGTT-AGCATATGGGGTGCCGATGCAGATGA 479
consensus_9675#1 CAGTTGCCTATTCTTGACATTCATCATGATGTTTAGCATATGGGTGGCCGAT-CAGATGA 116
consensus_9675#2 ------------------------------------------------------------
consensus_9675#0 GTTTGATCCA-TCAAGGTTTGCAGAGGG-CAAGAGCTATCACCTTGGCGCATACTTCCCC 537
consensus_9675#1 GTTTGATCCACTCAAGGTTTGCAGAGGGGCAAGAGCTATCACCTTGGCGCATACTTCCCC 176
consensus_9675#2 ------------------------------------------------------------
consensus_9675#0 TTCGGGATTGGCCCTACCATCTGTGTCGGCCAGAATCTTGCAATGGTTGAAGCAAAGGTG 597
consensus_9675#1 TTCGGGATTGGCCCTACCATCTGTGTCGGCCAGAATCTTGCAATGGTTGAAGCCAAGGTG 236
consensus_9675#2 -----------------------TGTCGGCCAGAATCTTACGATGGTTGAAGAAAAGGTG 37
**************** * ********** ******
consensus_9675#0 GCCCTTGCAATGATCCTTCCGCGCTTCGCGCTTGTTGTCTCACCATCTTATGTTCATGCA 657
consensus_9675#1 GCCCTTGCAATGATCCTTCAGCGCTTCGCGCTTGTTGTCTCACCGTCTTATGTTCATGCA 296
consensus_9675#2 GCCCTTGCAATGATCCTTCAGCGTTTCGCGCTTGTTGTCTCGC-GTCCTATGTTCATGCG 96
******************* *** ***************** * ** ***********
consensus_9675#0 CCAATGCTTGTAGTCACACTCCAACCCCA-GTATGGTGCTCAAGTTCTTGTCCATAAGAT 716
consensus_9675#1 CCAATGCTTGTAGTCACACTCCAACCCCACGTATGGTGCTCAAGTTCTTGTCCATAAGAT 356
consensus_9675#2 CCGATGCATGGAGTCACACTCCAACCCCA-GTACGGTGCTCAAGTTCTTGCCCATAAGAT 155
** **** ** ****************** *** **************** *********
consensus_9675#0 TTGAGACTTCGATGGACCTGTGTGTGGATTTCTGGGTTTTTGCAGTAAGTATGGTG---- 772
consensus_9675#1 TTGAGACTTCGATGGACCTGTGTGTGGATTTCTGGGTTTTT-CAGTAAGTATGGTG---- 411
consensus_9675#2 TTGAGACTTCGATGGATTTGTGTGTGGATTTCTGGGTCTTTGCAGTAAATATGGTGTATG 215
**************** ******************* *** ****** *******
consensus_9675#0 -----------------------------------AACGATTT-GGAAGGATGTTTCCAG 796
consensus_9675#1 -----------------------------------AACGATTT-GGAAGGATGTTTCCAG 435
consensus_9675#2 CAGCAGACGTACATCGTGTATTATATATCTTTGTGAACAATTTTGGAAGGATGTTTCCAG 275
*** **** ****************
consensus_9675#0 CTCGTCTGAACTTTCTATCAGAAGTGGAATCTGCTGGAGCCATGGGAGCATATAAAGAGT 856
consensus_9675#1 CTCGTCTGAACTTTCTATCAGAAGTGGAATCTGCTGGAGCCATGGGAGCATTTTCCGTGT 495
consensus_9675#2 CTCGTCTGAACTTTCTATCAAAAGTGGAATTTGCTGGAGCCATGGGAGCATTTTCCATGT 335
******************** ********* ******************** * **
consensus_9675#0 ACAAACAACACTTAGTACCTGCAGAAATGTACAG-AAAATAAAATGGTTTGCAACTCTTC 915
consensus_9675#1 ACAAACAACACTTAGTACCTGCAGAAATGTACAGCAAAATAAAATGGTTTGCA-CTCTTC 554
consensus_9675#2 ACAAACAACTCTTAATACCTGCAGAAATGTACAG-AAAATAAAATGGTTTGCGAGCGGC- 393
********* **** ******************* *****************
consensus_9675#0 ATGTTTTTGCCATGTACAAATAGGTCTTACTTGC-TGAAATGTAGTAATACACAAAATAA 974
consensus_9675#1 ATGTTTTTGCCATGTACAA-TAGGTCTTACTTGCCTGAAATGTAGTAATACACAAA-TAA 612
consensus_9675#2 ------------------------------------------------------------
consensus_9675#0 AATGGTTCGGAATTGGTTAGTAAAAAAAAAAAAAAAAAAAAAACAC 1020
consensus_9675#1 AATGGTTCGGAAAAAAA----------------------------- 629
consensus_9675#2 ----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||